data_7JOR # _model_server_result.job_id GBegwiDqjIBFanxcVyAlDg _model_server_result.datetime_utc '2024-11-26 15:56:20' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7jor # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":201}' # _entry.id 7JOR # _exptl.entry_id 7JOR _exptl.method 'NEUTRON DIFFRACTION' # _entity.details ? _entity.formula_weight 616.487 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'PROTOPORPHYRIN IX CONTAINING FE' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 7JOR _cell.length_a 60.444 _cell.length_b 66.12 _cell.length_c 68.377 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7JOR _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? monomeric 1 author_defined_assembly 1 ? monomeric 1 author_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,D,F 1 1 B,E,G 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 E N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A NE2 HIS 89 A HIS 89 1_555 C FE HEM . A HEM 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.406 ? metalc ? metalc2 B NE2 HIS 55 B HIS 55 1_555 E FE HEM . B HEM 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.096 ? # _chem_comp.formula 'C34 H32 Fe N4 O4' _chem_comp.formula_weight 616.487 _chem_comp.id HEM _chem_comp.mon_nstd_flag . _chem_comp.name 'PROTOPORPHYRIN IX CONTAINING FE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms HEME # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag CHA C1A HEM sing 129 n n CHA C4D HEM doub 130 n n CHA HHA HEM sing 131 n n CHB C4A HEM sing 132 n n CHB C1B HEM doub 133 n n CHB HHB HEM sing 134 n n CHC C4B HEM sing 135 n n CHC C1C HEM doub 136 n n CHC HHC HEM sing 137 n n CHD C4C HEM doub 138 n n CHD C1D HEM sing 139 n n CHD HHD HEM sing 140 n n C1A C2A HEM doub 141 n y C1A NA HEM sing 142 n y C2A C3A HEM sing 143 n y C2A CAA HEM sing 144 n n C3A C4A HEM doub 145 n y C3A CMA HEM sing 146 n n C4A NA HEM sing 147 n y CMA HMA HEM sing 148 n n CMA HMAA HEM sing 149 n n CMA HMAB HEM sing 150 n n CAA CBA HEM sing 151 n n CAA HAA HEM sing 152 n n CAA HAAA HEM sing 153 n n CBA CGA HEM sing 154 n n CBA HBA HEM sing 155 n n CBA HBAA HEM sing 156 n n CGA O1A HEM doub 157 n n CGA O2A HEM sing 158 n n C1B C2B HEM sing 159 n n C1B NB HEM sing 160 n n C2B C3B HEM doub 161 n n C2B CMB HEM sing 162 n n C3B C4B HEM sing 163 n n C3B CAB HEM sing 164 n n C4B NB HEM doub 165 n n CMB HMB HEM sing 166 n n CMB HMBA HEM sing 167 n n CMB HMBB HEM sing 168 n n CAB CBB HEM doub 169 n n CAB HAB HEM sing 170 n n CBB HBB HEM sing 171 n n CBB HBBA HEM sing 172 n n C1C C2C HEM sing 173 n y C1C NC HEM sing 174 n y C2C C3C HEM doub 175 n y C2C CMC HEM sing 176 n n C3C C4C HEM sing 177 n y C3C CAC HEM sing 178 n n C4C NC HEM sing 179 n y CMC HMC HEM sing 180 n n CMC HMCA HEM sing 181 n n CMC HMCB HEM sing 182 n n CAC CBC HEM doub 183 n n CAC HAC HEM sing 184 n n CBC HBC HEM sing 185 n n CBC HBCA HEM sing 186 n n C1D C2D HEM sing 187 n n C1D ND HEM doub 188 n n C2D C3D HEM doub 189 n n C2D CMD HEM sing 190 n n C3D C4D HEM sing 191 n n C3D CAD HEM sing 192 n n C4D ND HEM sing 193 n n CMD HMD HEM sing 194 n n CMD HMDA HEM sing 195 n n CMD HMDB HEM sing 196 n n CAD CBD HEM sing 197 n n CAD HAD HEM sing 198 n n CAD HADA HEM sing 199 n n CBD CGD HEM sing 200 n n CBD HBD HEM sing 201 n n CBD HBDA HEM sing 202 n n CGD O1D HEM doub 203 n n CGD O2D HEM sing 204 n n O2A H2A HEM sing 205 n n O2D H2D HEM sing 206 n n FE NA HEM sing 207 n n FE NB HEM sing 208 n n FE NC HEM sing 209 n n FE ND HEM sing 210 n n # _atom_sites.entry_id 7JOR _atom_sites.fract_transf_matrix[1][1] 0.016544 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.015124 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.014625 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 HEM A 1 201 201 HEM HEM . D 3 PG0 A 1 202 202 PG0 PG0 . E 2 HEM B 1 201 201 HEM HEM . F 4 HOH A 1 301 301 HOH HOH . F 4 HOH A 2 302 302 HOH HOH . F 4 HOH A 3 303 303 HOH HOH . F 4 HOH A 4 304 304 HOH HOH . F 4 HOH A 5 305 305 HOH HOH . F 4 HOH A 6 306 306 HOH HOH . F 4 HOH A 7 307 307 HOH HOH . F 4 HOH A 8 308 308 HOH HOH . F 4 HOH A 9 309 309 HOH HOH . F 4 HOH A 10 310 310 HOH HOH . F 4 HOH A 11 311 311 HOH HOH . F 4 HOH A 12 312 312 HOH HOH . F 4 HOH A 13 313 313 HOH HOH . F 4 HOH A 14 314 314 HOH HOH . F 4 HOH A 15 315 315 HOH HOH . F 4 HOH A 16 316 316 HOH HOH . F 4 HOH A 17 317 317 HOH HOH . F 4 HOH A 18 318 318 HOH HOH . F 4 HOH A 19 319 319 HOH HOH . F 4 HOH A 20 320 320 HOH HOH . F 4 HOH A 21 321 321 HOH HOH . F 4 HOH A 22 322 322 HOH HOH . G 4 HOH B 1 301 301 HOH HOH . G 4 HOH B 2 302 302 HOH HOH . G 4 HOH B 3 303 303 HOH HOH . G 4 HOH B 4 304 304 HOH HOH . G 4 HOH B 5 305 305 HOH HOH . G 4 HOH B 6 306 306 HOH HOH . G 4 HOH B 7 307 307 HOH HOH . G 4 HOH B 8 308 308 HOH HOH . G 4 HOH B 9 309 309 HOH HOH . G 4 HOH B 10 310 310 HOH HOH . G 4 HOH B 11 311 311 HOH HOH . G 4 HOH B 12 312 312 HOH HOH . G 4 HOH B 13 313 313 HOH HOH . G 4 HOH B 14 314 314 HOH HOH . G 4 HOH B 15 315 315 HOH HOH . G 4 HOH B 16 316 316 HOH HOH . G 4 HOH B 17 317 317 HOH HOH . G 4 HOH B 18 318 318 HOH HOH . G 4 HOH B 19 319 319 HOH HOH . G 4 HOH B 20 320 320 HOH HOH . G 4 HOH B 21 321 321 HOH HOH . G 4 HOH B 22 322 322 HOH HOH . G 4 HOH B 23 323 323 HOH HOH . G 4 HOH B 24 324 324 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C CHA HEM . . . C 2 -8.082 5.041 11.419 1 23.73 ? CHA HEM 201 A 1 HETATM 2 C CHB HEM . . . C 2 -9.62 0.738 10.141 1 20.78 ? CHB HEM 201 A 1 HETATM 3 C CHC HEM . . . C 2 -5.697 -1.319 12.026 1 18.98 ? CHC HEM 201 A 1 HETATM 4 C CHD HEM . . . C 2 -4.35 2.98 13.524 1 20.17 ? CHD HEM 201 A 1 HETATM 5 C C1A HEM . . . C 2 -8.825 4.039 10.911 1 21.09 ? C1A HEM 201 A 1 HETATM 6 C C2A HEM . . . C 2 -10.021 4.262 10.275 1 23.47 ? C2A HEM 201 A 1 HETATM 7 C C3A HEM . . . C 2 -10.488 3.063 9.924 1 22.74 ? C3A HEM 201 A 1 HETATM 8 C C4A HEM . . . C 2 -9.547 2.09 10.303 1 21.83 ? C4A HEM 201 A 1 HETATM 9 C CMA HEM . . . C 2 -11.753 2.847 9.198 1 22.41 ? CMA HEM 201 A 1 HETATM 10 C CAA HEM . . . C 2 -10.67 5.605 10.076 1 24.84 ? CAA HEM 201 A 1 HETATM 11 C CBA HEM . . . C 2 -11.119 6.227 11.394 1 21.62 ? CBA HEM 201 A 1 HETATM 12 C CGA HEM . . . C 2 -12.217 7.255 11.222 1 25.44 ? CGA HEM 201 A 1 HETATM 13 O O1A HEM . . . C 2 -12.933 7.487 12.185 1 22.03 ? O1A HEM 201 A 1 HETATM 14 O O2A HEM . . . C 2 -12.436 7.851 10.142 1 23.62 ? O2A HEM 201 A 1 HETATM 15 C C1B HEM . . . C 2 -8.651 -0.174 10.548 1 19.52 ? C1B HEM 201 A 1 HETATM 16 C C2B HEM . . . C 2 -8.805 -1.549 10.322 1 20.74 ? C2B HEM 201 A 1 HETATM 17 C C3B HEM . . . C 2 -7.731 -2.162 10.825 1 18.63 ? C3B HEM 201 A 1 HETATM 18 C C4B HEM . . . C 2 -6.911 -1.089 11.393 1 19.4 ? C4B HEM 201 A 1 HETATM 19 C CMB HEM . . . C 2 -9.948 -2.217 9.635 1 17.61 ? CMB HEM 201 A 1 HETATM 20 C CAB HEM . . . C 2 -7.465 -3.604 10.806 1 17.58 ? CAB HEM 201 A 1 HETATM 21 C CBB HEM . . . C 2 -8.205 -4.419 10.104 1 15.22 ? CBB HEM 201 A 1 HETATM 22 C C1C HEM . . . C 2 -4.962 -0.315 12.62 1 18.5 ? C1C HEM 201 A 1 HETATM 23 C C2C HEM . . . C 2 -3.791 -0.48 13.346 1 16.7 ? C2C HEM 201 A 1 HETATM 24 C C3C HEM . . . C 2 -3.397 0.718 13.774 1 19.23 ? C3C HEM 201 A 1 HETATM 25 C C4C HEM . . . C 2 -4.362 1.648 13.297 1 19.94 ? C4C HEM 201 A 1 HETATM 26 C CMC HEM . . . C 2 -3.002 -1.703 13.648 1 17.13 ? CMC HEM 201 A 1 HETATM 27 C CAC HEM . . . C 2 -2.168 0.928 14.536 1 19.09 ? CAC HEM 201 A 1 HETATM 28 C CBC HEM . . . C 2 -1.979 0.571 15.786 1 19.89 ? CBC HEM 201 A 1 HETATM 29 C C1D HEM . . . C 2 -5.278 3.868 13.054 1 19.11 ? C1D HEM 201 A 1 HETATM 30 C C2D HEM . . . C 2 -5.168 5.287 13.315 1 22.69 ? C2D HEM 201 A 1 HETATM 31 C C3D HEM . . . C 2 -6.191 5.859 12.735 1 23.08 ? C3D HEM 201 A 1 HETATM 32 C C4D HEM . . . C 2 -6.935 4.783 12.123 1 23.32 ? C4D HEM 201 A 1 HETATM 33 C CMD HEM . . . C 2 -4.13 6.02 14.078 1 23.22 ? CMD HEM 201 A 1 HETATM 34 C CAD HEM . . . C 2 -6.507 7.311 12.758 1 28.25 ? CAD HEM 201 A 1 HETATM 35 C CBD HEM . . . C 2 -7.955 7.488 13.259 1 27.53 ? CBD HEM 201 A 1 HETATM 36 C CGD HEM . . . C 2 -8.156 8.789 13.944 1 25.92 ? CGD HEM 201 A 1 HETATM 37 O O1D HEM . . . C 2 -7.232 9.365 14.511 1 26.12 ? O1D HEM 201 A 1 HETATM 38 O O2D HEM . . . C 2 -9.261 9.275 13.957 1 25.64 ? O2D HEM 201 A 1 HETATM 39 N NA HEM . . . C 2 -8.567 2.718 10.951 1 21.17 ? NA HEM 201 A 1 HETATM 40 N NB HEM . . . C 2 -7.548 0.044 11.197 1 18.73 ? NB HEM 201 A 1 HETATM 41 N NC HEM . . . C 2 -5.31 0.98 12.638 1 18.45 ? NC HEM 201 A 1 HETATM 42 N ND HEM . . . C 2 -6.326 3.634 12.321 1 20.68 ? ND HEM 201 A 1 HETATM 43 FE FE HEM . . . C 2 -6.91 1.972 11.726 1 19.81 ? FE HEM 201 A 1 HETATM 44 H HHB HEM . . . C 2 -10.379 0.398 9.725 1 24.93 ? HHB HEM 201 A 1 HETATM 45 H HHC HEM . . . C 2 -5.365 -2.187 12.05 1 22.77 ? HHC HEM 201 A 1 HETATM 46 H HHD HEM . . . C 2 -3.656 3.32 14.041 1 24.2 ? HHD HEM 201 A 1 HETATM 47 H HMA HEM . . . C 2 -12.398 3.52 9.465 1 26.89 ? HMA HEM 201 A 1 HETATM 48 H HMAA HEM . . . C 2 -12.1 1.966 9.408 1 26.89 ? HMAA HEM 201 A 1 HETATM 49 H HMAB HEM . . . C 2 -11.594 2.912 8.243 1 26.89 ? HMAB HEM 201 A 1 HETATM 50 H HAA HEM . . . C 2 -11.435 5.509 9.488 1 29.8 ? HAA HEM 201 A 1 HETATM 51 H HAAA HEM . . . C 2 -10.046 6.202 9.634 1 29.8 ? HAAA HEM 201 A 1 HETATM 52 H HBA HEM . . . C 2 -10.357 6.645 11.824 1 25.94 ? HBA HEM 201 A 1 HETATM 53 H HBAA HEM . . . C 2 -11.43 5.525 11.987 1 25.94 ? HBAA HEM 201 A 1 HETATM 54 H HMB HEM . . . C 2 -10.756 -1.699 9.774 1 21.13 ? HMB HEM 201 A 1 HETATM 55 H HMBA HEM . . . C 2 -10.069 -3.108 9.999 1 21.13 ? HMBA HEM 201 A 1 HETATM 56 H HMBB HEM . . . C 2 -9.763 -2.279 8.685 1 21.13 ? HMBB HEM 201 A 1 HETATM 57 H HAB HEM . . . C 2 -6.726 -3.959 11.324 1 21.09 ? HAB HEM 201 A 1 HETATM 58 H HBB HEM . . . C 2 -8.013 -5.37 10.104 1 18.26 ? HBB HEM 201 A 1 HETATM 59 H HBBA HEM . . . C 2 -8.946 -4.074 9.582 1 18.26 ? HBBA HEM 201 A 1 HETATM 60 H HMC HEM . . . C 2 -2.065 -1.469 13.741 1 20.55 ? HMC HEM 201 A 1 HETATM 61 H HMCA HEM . . . C 2 -3.105 -2.341 12.925 1 20.55 ? HMCA HEM 201 A 1 HETATM 62 H HMCB HEM . . . C 2 -3.32 -2.098 14.475 1 20.55 ? HMCB HEM 201 A 1 HETATM 63 H HAC HEM . . . C 2 -1.432 1.367 14.082 1 22.9 ? HAC HEM 201 A 1 HETATM 64 H HBC HEM . . . C 2 -1.129 0.749 16.218 1 23.86 ? HBC HEM 201 A 1 HETATM 65 H HBCA HEM . . . C 2 -2.69 0.129 16.277 1 23.86 ? HBCA HEM 201 A 1 HETATM 66 H HMD HEM . . . C 2 -4.032 6.914 13.715 1 27.86 ? HMD HEM 201 A 1 HETATM 67 H HMDA HEM . . . C 2 -3.285 5.549 14.01 1 27.86 ? HMDA HEM 201 A 1 HETATM 68 H HMDB HEM . . . C 2 -4.393 6.077 15.01 1 27.86 ? HMDB HEM 201 A 1 HETATM 69 H HAD HEM . . . C 2 -6.408 7.692 11.871 1 33.9 ? HAD HEM 201 A 1 HETATM 70 H HADA HEM . . . C 2 -5.889 7.781 13.339 1 33.9 ? HADA HEM 201 A 1 HETATM 71 H HBD HEM . . . C 2 -8.175 6.766 13.868 1 33.03 ? HBD HEM 201 A 1 HETATM 72 H HBDA HEM . . . C 2 -8.566 7.422 12.508 1 33.03 ? HBDA HEM 201 A 1 HETATM 73 H HHA HEM . . . C 2 -8.352 5.922 11.29 1 28.47 ? HHA HEM 201 A 1 # _model_server_stats.io_time_ms 11 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 13 _model_server_stats.query_time_ms 282 _model_server_stats.encode_time_ms 7 _model_server_stats.element_count 73 #