data_7JOR # _model_server_result.job_id Mf5uNZ0UD-pBRgstO5PxmA _model_server_result.datetime_utc '2024-11-26 16:10:08' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7jor # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":201}' # _entry.id 7JOR # _exptl.entry_id 7JOR _exptl.method 'NEUTRON DIFFRACTION' # _entity.details ? _entity.formula_weight 616.487 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'PROTOPORPHYRIN IX CONTAINING FE' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 7JOR _cell.length_a 60.444 _cell.length_b 66.12 _cell.length_c 68.377 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7JOR _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? monomeric 1 author_defined_assembly 1 ? monomeric 1 author_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,D,F 1 1 B,E,G 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 E N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A NE2 HIS 89 A HIS 89 1_555 C FE HEM . A HEM 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.406 ? metalc ? metalc2 B NE2 HIS 55 B HIS 55 1_555 E FE HEM . B HEM 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.096 ? # _chem_comp.formula 'C34 H32 Fe N4 O4' _chem_comp.formula_weight 616.487 _chem_comp.id HEM _chem_comp.mon_nstd_flag . _chem_comp.name 'PROTOPORPHYRIN IX CONTAINING FE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms HEME # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag CHA C1A HEM sing 129 n n CHA C4D HEM doub 130 n n CHA HHA HEM sing 131 n n CHB C4A HEM sing 132 n n CHB C1B HEM doub 133 n n CHB HHB HEM sing 134 n n CHC C4B HEM sing 135 n n CHC C1C HEM doub 136 n n CHC HHC HEM sing 137 n n CHD C4C HEM doub 138 n n CHD C1D HEM sing 139 n n CHD HHD HEM sing 140 n n C1A C2A HEM doub 141 n y C1A NA HEM sing 142 n y C2A C3A HEM sing 143 n y C2A CAA HEM sing 144 n n C3A C4A HEM doub 145 n y C3A CMA HEM sing 146 n n C4A NA HEM sing 147 n y CMA HMA HEM sing 148 n n CMA HMAA HEM sing 149 n n CMA HMAB HEM sing 150 n n CAA CBA HEM sing 151 n n CAA HAA HEM sing 152 n n CAA HAAA HEM sing 153 n n CBA CGA HEM sing 154 n n CBA HBA HEM sing 155 n n CBA HBAA HEM sing 156 n n CGA O1A HEM doub 157 n n CGA O2A HEM sing 158 n n C1B C2B HEM sing 159 n n C1B NB HEM sing 160 n n C2B C3B HEM doub 161 n n C2B CMB HEM sing 162 n n C3B C4B HEM sing 163 n n C3B CAB HEM sing 164 n n C4B NB HEM doub 165 n n CMB HMB HEM sing 166 n n CMB HMBA HEM sing 167 n n CMB HMBB HEM sing 168 n n CAB CBB HEM doub 169 n n CAB HAB HEM sing 170 n n CBB HBB HEM sing 171 n n CBB HBBA HEM sing 172 n n C1C C2C HEM sing 173 n y C1C NC HEM sing 174 n y C2C C3C HEM doub 175 n y C2C CMC HEM sing 176 n n C3C C4C HEM sing 177 n y C3C CAC HEM sing 178 n n C4C NC HEM sing 179 n y CMC HMC HEM sing 180 n n CMC HMCA HEM sing 181 n n CMC HMCB HEM sing 182 n n CAC CBC HEM doub 183 n n CAC HAC HEM sing 184 n n CBC HBC HEM sing 185 n n CBC HBCA HEM sing 186 n n C1D C2D HEM sing 187 n n C1D ND HEM doub 188 n n C2D C3D HEM doub 189 n n C2D CMD HEM sing 190 n n C3D C4D HEM sing 191 n n C3D CAD HEM sing 192 n n C4D ND HEM sing 193 n n CMD HMD HEM sing 194 n n CMD HMDA HEM sing 195 n n CMD HMDB HEM sing 196 n n CAD CBD HEM sing 197 n n CAD HAD HEM sing 198 n n CAD HADA HEM sing 199 n n CBD CGD HEM sing 200 n n CBD HBD HEM sing 201 n n CBD HBDA HEM sing 202 n n CGD O1D HEM doub 203 n n CGD O2D HEM sing 204 n n O2A H2A HEM sing 205 n n O2D H2D HEM sing 206 n n FE NA HEM sing 207 n n FE NB HEM sing 208 n n FE NC HEM sing 209 n n FE ND HEM sing 210 n n # _atom_sites.entry_id 7JOR _atom_sites.fract_transf_matrix[1][1] 0.016544 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.015124 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.014625 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 HEM A 1 201 201 HEM HEM . D 3 PG0 A 1 202 202 PG0 PG0 . E 2 HEM B 1 201 201 HEM HEM . F 4 HOH A 1 301 301 HOH HOH . F 4 HOH A 2 302 302 HOH HOH . F 4 HOH A 3 303 303 HOH HOH . F 4 HOH A 4 304 304 HOH HOH . F 4 HOH A 5 305 305 HOH HOH . F 4 HOH A 6 306 306 HOH HOH . F 4 HOH A 7 307 307 HOH HOH . F 4 HOH A 8 308 308 HOH HOH . F 4 HOH A 9 309 309 HOH HOH . F 4 HOH A 10 310 310 HOH HOH . F 4 HOH A 11 311 311 HOH HOH . F 4 HOH A 12 312 312 HOH HOH . F 4 HOH A 13 313 313 HOH HOH . F 4 HOH A 14 314 314 HOH HOH . F 4 HOH A 15 315 315 HOH HOH . F 4 HOH A 16 316 316 HOH HOH . F 4 HOH A 17 317 317 HOH HOH . F 4 HOH A 18 318 318 HOH HOH . F 4 HOH A 19 319 319 HOH HOH . F 4 HOH A 20 320 320 HOH HOH . F 4 HOH A 21 321 321 HOH HOH . F 4 HOH A 22 322 322 HOH HOH . G 4 HOH B 1 301 301 HOH HOH . G 4 HOH B 2 302 302 HOH HOH . G 4 HOH B 3 303 303 HOH HOH . G 4 HOH B 4 304 304 HOH HOH . G 4 HOH B 5 305 305 HOH HOH . G 4 HOH B 6 306 306 HOH HOH . G 4 HOH B 7 307 307 HOH HOH . G 4 HOH B 8 308 308 HOH HOH . G 4 HOH B 9 309 309 HOH HOH . G 4 HOH B 10 310 310 HOH HOH . G 4 HOH B 11 311 311 HOH HOH . G 4 HOH B 12 312 312 HOH HOH . G 4 HOH B 13 313 313 HOH HOH . G 4 HOH B 14 314 314 HOH HOH . G 4 HOH B 15 315 315 HOH HOH . G 4 HOH B 16 316 316 HOH HOH . G 4 HOH B 17 317 317 HOH HOH . G 4 HOH B 18 318 318 HOH HOH . G 4 HOH B 19 319 319 HOH HOH . G 4 HOH B 20 320 320 HOH HOH . G 4 HOH B 21 321 321 HOH HOH . G 4 HOH B 22 322 322 HOH HOH . G 4 HOH B 23 323 323 HOH HOH . G 4 HOH B 24 324 324 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C CHA HEM . . . E 2 -34.897 -6.12 24.463 0.66 26.51 ? CHA HEM 201 B 1 HETATM 2 C CHB HEM . . . E 2 -33.875 -7.845 20.051 0.66 21.66 ? CHB HEM 201 B 1 HETATM 3 C CHC HEM . . . E 2 -37.52 -5.073 18.349 0.66 23.82 ? CHC HEM 201 B 1 HETATM 4 C CHD HEM . . . E 2 -39.354 -5.078 22.834 0.66 25.5 ? CHD HEM 201 B 1 HETATM 5 C C1A HEM . . . E 2 -34.298 -6.801 23.426 0.66 28.23 ? C1A HEM 201 B 1 HETATM 6 C C2A HEM . . . E 2 -33.169 -7.635 23.548 0.66 28.89 ? C2A HEM 201 B 1 HETATM 7 C C3A HEM . . . E 2 -32.876 -8.123 22.312 0.66 25.95 ? C3A HEM 201 B 1 HETATM 8 C C4A HEM . . . E 2 -33.822 -7.596 21.41 0.66 23.72 ? C4A HEM 201 B 1 HETATM 9 C CMA HEM . . . E 2 -31.745 -9.058 21.97 0.66 26.98 ? CMA HEM 201 B 1 HETATM 10 C CAA HEM . . . E 2 -32.419 -7.933 24.82 0.66 29.09 ? CAA HEM 201 B 1 HETATM 11 C CBA HEM . . . E 2 -32.272 -6.648 25.637 0.66 27.88 ? CBA HEM 201 B 1 HETATM 12 C CGA HEM . . . E 2 -30.811 -6.369 25.876 0.66 29.48 ? CGA HEM 201 B 1 HETATM 13 O O1A HEM . . . E 2 -30.394 -5.19 25.888 0.66 29.31 ? O1A HEM 201 B 1 HETATM 14 O O2A HEM . . . E 2 -30.015 -7.316 26.062 0.66 28.23 ? O2A HEM 201 B 1 HETATM 15 C C1B HEM . . . E 2 -34.761 -7.158 19.208 0.66 23.91 ? C1B HEM 201 B 1 HETATM 16 C C2B HEM . . . E 2 -34.649 -7.197 17.792 0.66 22.24 ? C2B HEM 201 B 1 HETATM 17 C C3B HEM . . . E 2 -35.656 -6.43 17.284 0.66 22 ? C3B HEM 201 B 1 HETATM 18 C C4B HEM . . . E 2 -36.402 -5.906 18.452 0.66 22.26 ? C4B HEM 201 B 1 HETATM 19 C CMB HEM . . . E 2 -33.611 -7.948 16.998 0.66 18.42 ? CMB HEM 201 B 1 HETATM 20 C CAB HEM . . . E 2 -35.944 -6.172 15.862 0.66 22.56 ? CAB HEM 201 B 1 HETATM 21 C CBB HEM . . . E 2 -35.84 -7.156 14.974 0.66 18.28 ? CBB HEM 201 B 1 HETATM 22 C C1C HEM . . . E 2 -38.425 -4.956 19.397 0.66 23.44 ? C1C HEM 201 B 1 HETATM 23 C C2C HEM . . . E 2 -39.786 -4.629 19.295 0.66 25.59 ? C2C HEM 201 B 1 HETATM 24 C C3C HEM . . . E 2 -40.308 -4.632 20.58 0.66 27.53 ? C3C HEM 201 B 1 HETATM 25 C C4C HEM . . . E 2 -39.248 -4.97 21.468 0.66 26.08 ? C4C HEM 201 B 1 HETATM 26 C CMC HEM . . . E 2 -40.539 -4.328 18.024 0.66 24.09 ? CMC HEM 201 B 1 HETATM 27 C CAC HEM . . . E 2 -41.703 -4.341 20.956 0.66 30.51 ? CAC HEM 201 B 1 HETATM 28 C CBC HEM . . . E 2 -42.181 -3.107 20.836 0.66 29.25 ? CBC HEM 201 B 1 HETATM 29 C C1D HEM . . . E 2 -38.232 -5.301 23.639 0.66 24.76 ? C1D HEM 201 B 1 HETATM 30 C C2D HEM . . . E 2 -38.279 -5.144 25.097 0.66 27.04 ? C2D HEM 201 B 1 HETATM 31 C C3D HEM . . . E 2 -37.045 -5.432 25.552 0.66 27.6 ? C3D HEM 201 B 1 HETATM 32 C C4D HEM . . . E 2 -36.238 -5.764 24.373 0.66 24.76 ? C4D HEM 201 B 1 HETATM 33 C CMD HEM . . . E 2 -39.474 -4.74 25.923 0.66 25.47 ? CMD HEM 201 B 1 HETATM 34 C CAD HEM . . . E 2 -36.585 -5.414 26.986 0.66 30.9 ? CAD HEM 201 B 1 HETATM 35 C CBD HEM . . . E 2 -36.308 -3.973 27.416 0.66 28.73 ? CBD HEM 201 B 1 HETATM 36 C CGD HEM . . . E 2 -36.932 -3.721 28.764 0.66 32.96 ? CGD HEM 201 B 1 HETATM 37 O O1D HEM . . . E 2 -36.27 -3.919 29.806 0.66 33 ? O1D HEM 201 B 1 HETATM 38 O O2D HEM . . . E 2 -38.113 -3.313 28.841 0.66 31.09 ? O2D HEM 201 B 1 HETATM 39 N NA HEM . . . E 2 -34.683 -6.791 22.109 0.66 25.03 ? NA HEM 201 B 1 HETATM 40 N NB HEM . . . E 2 -35.803 -6.387 19.555 0.66 24.19 ? NB HEM 201 B 1 HETATM 41 N NC HEM . . . E 2 -38.121 -5.158 20.714 0.66 24.8 ? NC HEM 201 B 1 HETATM 42 N ND HEM . . . E 2 -36.996 -5.67 23.269 0.66 23.9 ? ND HEM 201 B 1 HETATM 43 FE FE HEM . . . E 2 -36.402 -6.002 21.533 0.66 23.56 ? FE HEM 201 B 1 HETATM 44 H HHB HEM . . . E 2 -33.308 -8.485 19.686 0.66 25.98 ? HHB HEM 201 B 1 HETATM 45 H HHC HEM . . . E 2 -37.66 -4.59 17.567 0.66 28.58 ? HHC HEM 201 B 1 HETATM 46 H HHD HEM . . . E 2 -40.191 -5.001 23.232 0.66 30.6 ? HHD HEM 201 B 1 HETATM 47 H HMA HEM . . . E 2 -31.005 -8.908 22.579 0.66 32.37 ? HMA HEM 201 B 1 HETATM 48 H HMAA HEM . . . E 2 -31.452 -8.893 21.06 0.66 32.37 ? HMAA HEM 201 B 1 HETATM 49 H HMAB HEM . . . E 2 -32.048 -9.976 22.05 0.66 32.37 ? HMAB HEM 201 B 1 HETATM 50 H HAA HEM . . . E 2 -31.545 -8.299 24.613 0.66 34.9 ? HAA HEM 201 B 1 HETATM 51 H HAAA HEM . . . E 2 -32.892 -8.604 25.336 0.66 34.9 ? HAAA HEM 201 B 1 HETATM 52 H HBA HEM . . . E 2 -32.737 -6.737 26.484 0.66 33.45 ? HBA HEM 201 B 1 HETATM 53 H HBAA HEM . . . E 2 -32.68 -5.905 25.166 0.66 33.45 ? HBAA HEM 201 B 1 HETATM 54 H HMB HEM . . . E 2 -32.79 -8.007 17.512 0.66 22.1 ? HMB HEM 201 B 1 HETATM 55 H HMBA HEM . . . E 2 -33.438 -7.48 16.166 0.66 22.1 ? HMBA HEM 201 B 1 HETATM 56 H HMBB HEM . . . E 2 -33.935 -8.841 16.804 0.66 22.1 ? HMBB HEM 201 B 1 HETATM 57 H HAB HEM . . . E 2 -36.209 -5.285 15.574 0.66 27.06 ? HAB HEM 201 B 1 HETATM 58 H HBB HEM . . . E 2 -36.03 -6.987 14.038 0.66 21.93 ? HBB HEM 201 B 1 HETATM 59 H HBBA HEM . . . E 2 -35.575 -8.043 15.262 0.66 21.93 ? HBBA HEM 201 B 1 HETATM 60 H HMC HEM . . . E 2 -39.935 -3.933 17.376 0.66 28.9 ? HMC HEM 201 B 1 HETATM 61 H HMCA HEM . . . E 2 -41.26 -3.707 18.214 0.66 28.9 ? HMCA HEM 201 B 1 HETATM 62 H HMCB HEM . . . E 2 -40.907 -5.15 17.663 0.66 28.9 ? HMCB HEM 201 B 1 HETATM 63 H HAC HEM . . . E 2 -42.273 -5.051 21.291 0.66 36.61 ? HAC HEM 201 B 1 HETATM 64 H HBC HEM . . . E 2 -43.099 -2.916 21.084 0.66 35.1 ? HBC HEM 201 B 1 HETATM 65 H HBCA HEM . . . E 2 -41.612 -2.397 20.501 0.66 35.1 ? HBCA HEM 201 B 1 HETATM 66 H HMD HEM . . . E 2 -39.412 -5.145 26.802 0.66 30.56 ? HMD HEM 201 B 1 HETATM 67 H HMDA HEM . . . E 2 -40.286 -5.04 25.486 0.66 30.56 ? HMDA HEM 201 B 1 HETATM 68 H HMDB HEM . . . E 2 -39.494 -3.774 26.013 0.66 30.56 ? HMDB HEM 201 B 1 HETATM 69 H HAD HEM . . . E 2 -35.783 -5.951 27.085 0.66 37.07 ? HAD HEM 201 B 1 HETATM 70 H HADA HEM . . . E 2 -37.262 -5.808 27.558 0.66 37.07 ? HADA HEM 201 B 1 HETATM 71 H HBD HEM . . . E 2 -36.669 -3.355 26.761 0.66 34.47 ? HBD HEM 201 B 1 HETATM 72 H HBDA HEM . . . E 2 -35.352 -3.816 27.457 0.66 34.47 ? HBDA HEM 201 B 1 HETATM 73 H HHA HEM . . . E 2 -34.406 -5.899 25.221 0.66 31.8 ? HHA HEM 201 B 1 # _model_server_stats.io_time_ms 14 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 20 _model_server_stats.query_time_ms 247 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 73 #