data_7JOW # _model_server_result.job_id oJZLWD4gk5GYDLAvP8S1ow _model_server_result.datetime_utc '2024-11-23 22:54:20' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7jow # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":802}' # _entry.id 7JOW # _exptl.entry_id 7JOW _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 60.055 _entity.id 5 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description UREA _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 7JOW _cell.length_a 100.495 _cell.length_b 100.495 _cell.length_c 167.298 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7JOW _symmetry.cell_setting ? _symmetry.Int_Tables_number 179 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 65 2 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 5 _struct_asym.id E _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 7 E CYS 22 1_555 A SG CYS 137 E CYS 157 1_555 ? A ? ? A ? ? ? ? ? ? ? 2.012 ? disulf ? disulf2 A SG CYS 26 E CYS 42 1_555 A SG CYS 42 E CYS 58 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.027 ? disulf ? disulf3 A SG CYS 111 E CYS 128 1_555 A SG CYS 211 E CYS 232 1_555 ? B ? ? ? ? ? ? ? ? ? ? 2.173 ? disulf ? disulf4 A SG CYS 118 E CYS 136 1_555 A SG CYS 183 E CYS 201 1_555 ? A ? ? ? ? ? ? ? ? ? ? 2.076 ? disulf ? disulf5 A SG CYS 118 E CYS 136 1_555 A SG CYS 183 E CYS 201 1_555 ? B ? ? ? ? ? ? ? ? ? ? 2.999 ? disulf ? disulf6 A SG CYS 148 E CYS 168 1_555 A SG CYS 162 E CYS 182 1_555 ? B ? ? ? ? ? ? ? ? ? ? 2.146 ? disulf ? disulf7 A SG CYS 173 E CYS 191 1_555 A SG CYS 198 E CYS 220 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.848 ? metalc ? metalc1 A NE2 HIS 10 E HIS 25 1_555 C CD CD . E CD 501 1_555 ? ? ? ? A ? ? ? ? ? ? ? 2.627 ? metalc ? metalc2 A NE2 HIS 10 E HIS 25 1_555 C CD CD . E CD 501 1_555 ? ? ? ? B ? ? ? ? ? ? ? 2.204 ? metalc ? metalc3 A OE2 GLU 61 E GLU 77 1_555 C CD CD . E CD 501 1_555 ? ? ? ? A ? ? ? ? ? ? ? 2.475 ? metalc ? metalc4 C CD CD . E CD 501 1_555 G O HOH . E HOH 669 1_555 ? A ? ? ? ? ? ? ? ? ? ? 2.182 ? metalc ? metalc5 C CD CD . E CD 501 9_655 B O SER 26 I SER 25 1_555 ? A ? ? A ? ? ? ? ? ? ? 2.11 ? metalc ? metalc6 C CD CD . E CD 501 9_655 B O SER 26 I SER 25 1_555 ? B ? ? B ? ? ? ? ? ? ? 2.126 ? metalc ? metalc7 C CD CD . E CD 501 9_655 B ND1 HIS 27 I HIS 26 1_555 ? A ? ? ? ? ? ? ? ? ? ? 2.341 ? metalc ? metalc8 C CD CD . E CD 501 9_655 B NE2 HIS 29 I HIS 28 1_555 ? B ? ? ? ? ? ? ? ? ? ? 2.693 ? # _chem_comp.formula 'C H4 N2 O' _chem_comp.formula_weight 60.055 _chem_comp.id URE _chem_comp.mon_nstd_flag . _chem_comp.name UREA _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C O URE doub 423 n n C N1 URE sing 424 n n C N2 URE sing 425 n n N1 HN11 URE sing 426 n n N1 HN12 URE sing 427 n n N2 HN21 URE sing 428 n n N2 HN22 URE sing 429 n n # _atom_sites.entry_id 7JOW _atom_sites.fract_transf_matrix[1][1] 0.009951 _atom_sites.fract_transf_matrix[1][2] 0.005745 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.01149 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.005977 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 CD E 1 501 501 CD CD . D 4 2PE I 1 801 801 2PE 2PE . E 5 URE I 1 802 901 URE URE . F 6 CL I 1 803 501 CL CL . G 7 HOH E 1 601 111 HOH HOH . G 7 HOH E 2 602 97 HOH HOH . G 7 HOH E 3 603 70 HOH HOH . G 7 HOH E 4 604 200 HOH HOH . G 7 HOH E 5 605 189 HOH HOH . G 7 HOH E 6 606 2 HOH HOH . G 7 HOH E 7 607 46 HOH HOH . G 7 HOH E 8 608 199 HOH HOH . G 7 HOH E 9 609 12 HOH HOH . G 7 HOH E 10 610 36 HOH HOH . G 7 HOH E 11 611 145 HOH HOH . G 7 HOH E 12 612 194 HOH HOH . G 7 HOH E 13 613 80 HOH HOH . G 7 HOH E 14 614 149 HOH HOH . G 7 HOH E 15 615 162 HOH HOH . G 7 HOH E 16 616 122 HOH HOH . G 7 HOH E 17 617 94 HOH HOH . G 7 HOH E 18 618 11 HOH HOH . G 7 HOH E 19 619 31 HOH HOH . G 7 HOH E 20 620 78 HOH HOH . G 7 HOH E 21 621 208 HOH HOH . G 7 HOH E 22 622 142 HOH HOH . G 7 HOH E 23 623 5 HOH HOH . G 7 HOH E 24 624 41 HOH HOH . G 7 HOH E 25 625 63 HOH HOH . G 7 HOH E 26 626 9 HOH HOH . G 7 HOH E 27 627 121 HOH HOH . G 7 HOH E 28 628 156 HOH HOH . G 7 HOH E 29 629 45 HOH HOH . G 7 HOH E 30 630 40 HOH HOH . G 7 HOH E 31 631 73 HOH HOH . G 7 HOH E 32 632 100 HOH HOH . G 7 HOH E 33 633 56 HOH HOH . G 7 HOH E 34 634 151 HOH HOH . G 7 HOH E 35 635 76 HOH HOH . G 7 HOH E 36 636 22 HOH HOH . G 7 HOH E 37 637 705 HOH HOH . G 7 HOH E 38 638 49 HOH HOH . G 7 HOH E 39 639 50 HOH HOH . G 7 HOH E 40 640 83 HOH HOH . G 7 HOH E 41 641 147 HOH HOH . G 7 HOH E 42 642 171 HOH HOH . G 7 HOH E 43 643 175 HOH HOH . G 7 HOH E 44 644 88 HOH HOH . G 7 HOH E 45 645 33 HOH HOH . G 7 HOH E 46 646 161 HOH HOH . G 7 HOH E 47 647 6 HOH HOH . G 7 HOH E 48 648 26 HOH HOH . G 7 HOH E 49 649 137 HOH HOH . G 7 HOH E 50 650 77 HOH HOH . G 7 HOH E 51 651 186 HOH HOH . G 7 HOH E 52 652 30 HOH HOH . G 7 HOH E 53 653 198 HOH HOH . G 7 HOH E 54 654 207 HOH HOH . G 7 HOH E 55 655 65 HOH HOH . G 7 HOH E 56 656 51 HOH HOH . G 7 HOH E 57 657 62 HOH HOH . G 7 HOH E 58 658 92 HOH HOH . G 7 HOH E 59 659 164 HOH HOH . G 7 HOH E 60 660 17 HOH HOH . G 7 HOH E 61 661 139 HOH HOH . G 7 HOH E 62 662 55 HOH HOH . G 7 HOH E 63 663 71 HOH HOH . G 7 HOH E 64 664 64 HOH HOH . G 7 HOH E 65 665 704 HOH HOH . G 7 HOH E 66 666 84 HOH HOH . G 7 HOH E 67 667 37 HOH HOH . G 7 HOH E 68 668 138 HOH HOH . G 7 HOH E 69 669 98 HOH HOH . G 7 HOH E 70 670 57 HOH HOH . G 7 HOH E 71 671 173 HOH HOH . G 7 HOH E 72 672 42 HOH HOH . G 7 HOH E 73 673 68 HOH HOH . G 7 HOH E 74 674 3 HOH HOH . G 7 HOH E 75 675 185 HOH HOH . G 7 HOH E 76 676 124 HOH HOH . G 7 HOH E 77 677 101 HOH HOH . G 7 HOH E 78 678 160 HOH HOH . G 7 HOH E 79 679 15 HOH HOH . G 7 HOH E 80 680 24 HOH HOH . G 7 HOH E 81 681 179 HOH HOH . G 7 HOH E 82 682 7 HOH HOH . G 7 HOH E 83 683 112 HOH HOH . G 7 HOH E 84 684 153 HOH HOH . G 7 HOH E 85 685 72 HOH HOH . G 7 HOH E 86 686 126 HOH HOH . G 7 HOH E 87 687 69 HOH HOH . G 7 HOH E 88 688 190 HOH HOH . G 7 HOH E 89 689 701 HOH HOH . G 7 HOH E 90 690 125 HOH HOH . G 7 HOH E 91 691 152 HOH HOH . G 7 HOH E 92 692 118 HOH HOH . G 7 HOH E 93 693 183 HOH HOH . G 7 HOH E 94 694 25 HOH HOH . G 7 HOH E 95 695 91 HOH HOH . G 7 HOH E 96 696 4 HOH HOH . G 7 HOH E 97 697 702 HOH HOH . G 7 HOH E 98 698 195 HOH HOH . G 7 HOH E 99 699 110 HOH HOH . G 7 HOH E 100 700 10 HOH HOH . G 7 HOH E 101 701 140 HOH HOH . G 7 HOH E 102 702 172 HOH HOH . G 7 HOH E 103 703 201 HOH HOH . G 7 HOH E 104 704 16 HOH HOH . G 7 HOH E 105 705 169 HOH HOH . G 7 HOH E 106 706 129 HOH HOH . G 7 HOH E 107 707 35 HOH HOH . G 7 HOH E 108 708 104 HOH HOH . G 7 HOH E 109 709 114 HOH HOH . G 7 HOH E 110 710 109 HOH HOH . G 7 HOH E 111 711 38 HOH HOH . G 7 HOH E 112 712 154 HOH HOH . G 7 HOH E 113 713 128 HOH HOH . G 7 HOH E 114 714 59 HOH HOH . G 7 HOH E 115 715 203 HOH HOH . G 7 HOH E 116 716 205 HOH HOH . G 7 HOH E 117 717 58 HOH HOH . G 7 HOH E 118 718 191 HOH HOH . G 7 HOH E 119 719 206 HOH HOH . H 7 HOH I 1 901 134 HOH HOH . H 7 HOH I 2 902 120 HOH HOH . H 7 HOH I 3 903 48 HOH HOH . H 7 HOH I 4 904 99 HOH HOH . H 7 HOH I 5 905 90 HOH HOH . H 7 HOH I 6 906 168 HOH HOH . H 7 HOH I 7 907 53 HOH HOH . H 7 HOH I 8 908 131 HOH HOH . H 7 HOH I 9 909 74 HOH HOH . H 7 HOH I 10 910 136 HOH HOH . H 7 HOH I 11 911 27 HOH HOH . H 7 HOH I 12 912 67 HOH HOH . H 7 HOH I 13 913 105 HOH HOH . H 7 HOH I 14 914 43 HOH HOH . H 7 HOH I 15 915 180 HOH HOH . H 7 HOH I 16 916 166 HOH HOH . H 7 HOH I 17 917 703 HOH HOH . H 7 HOH I 18 918 8 HOH HOH . H 7 HOH I 19 919 119 HOH HOH . H 7 HOH I 20 920 144 HOH HOH . H 7 HOH I 21 921 193 HOH HOH . H 7 HOH I 22 922 115 HOH HOH . H 7 HOH I 23 923 82 HOH HOH . H 7 HOH I 24 924 18 HOH HOH . H 7 HOH I 25 925 143 HOH HOH . H 7 HOH I 26 926 93 HOH HOH . H 7 HOH I 27 927 177 HOH HOH . H 7 HOH I 28 928 102 HOH HOH . H 7 HOH I 29 929 39 HOH HOH . H 7 HOH I 30 930 106 HOH HOH . H 7 HOH I 31 931 113 HOH HOH . H 7 HOH I 32 932 132 HOH HOH . H 7 HOH I 33 933 23 HOH HOH . H 7 HOH I 34 934 66 HOH HOH . H 7 HOH I 35 935 148 HOH HOH . H 7 HOH I 36 936 47 HOH HOH . H 7 HOH I 37 937 163 HOH HOH . H 7 HOH I 38 938 34 HOH HOH . H 7 HOH I 39 939 210 HOH HOH . H 7 HOH I 40 940 184 HOH HOH . H 7 HOH I 41 941 61 HOH HOH . H 7 HOH I 42 942 14 HOH HOH . H 7 HOH I 43 943 79 HOH HOH . H 7 HOH I 44 944 123 HOH HOH . H 7 HOH I 45 945 103 HOH HOH . H 7 HOH I 46 946 141 HOH HOH . H 7 HOH I 47 947 60 HOH HOH . H 7 HOH I 48 948 108 HOH HOH . H 7 HOH I 49 949 85 HOH HOH . H 7 HOH I 50 950 1 HOH HOH . H 7 HOH I 51 951 146 HOH HOH . H 7 HOH I 52 952 117 HOH HOH . H 7 HOH I 53 953 182 HOH HOH . H 7 HOH I 54 954 54 HOH HOH . H 7 HOH I 55 955 32 HOH HOH . H 7 HOH I 56 956 174 HOH HOH . H 7 HOH I 57 957 135 HOH HOH . H 7 HOH I 58 958 176 HOH HOH . H 7 HOH I 59 959 196 HOH HOH . H 7 HOH I 60 960 29 HOH HOH . H 7 HOH I 61 961 157 HOH HOH . H 7 HOH I 62 962 178 HOH HOH . H 7 HOH I 63 963 89 HOH HOH . H 7 HOH I 64 964 19 HOH HOH . H 7 HOH I 65 965 81 HOH HOH . H 7 HOH I 66 966 133 HOH HOH . H 7 HOH I 67 967 13 HOH HOH . H 7 HOH I 68 968 158 HOH HOH . H 7 HOH I 69 969 87 HOH HOH . H 7 HOH I 70 970 150 HOH HOH . H 7 HOH I 71 971 167 HOH HOH . H 7 HOH I 72 972 165 HOH HOH . H 7 HOH I 73 973 75 HOH HOH . H 7 HOH I 74 974 96 HOH HOH . H 7 HOH I 75 975 86 HOH HOH . H 7 HOH I 76 976 192 HOH HOH . H 7 HOH I 77 977 95 HOH HOH . H 7 HOH I 78 978 188 HOH HOH . H 7 HOH I 79 979 187 HOH HOH . H 7 HOH I 80 980 159 HOH HOH . H 7 HOH I 81 981 181 HOH HOH . H 7 HOH I 82 982 44 HOH HOH . H 7 HOH I 83 983 21 HOH HOH . H 7 HOH I 84 984 130 HOH HOH . H 7 HOH I 85 985 20 HOH HOH . H 7 HOH I 86 986 209 HOH HOH . H 7 HOH I 87 987 202 HOH HOH . H 7 HOH I 88 988 155 HOH HOH . H 7 HOH I 89 989 204 HOH HOH . H 7 HOH I 90 990 170 HOH HOH . H 7 HOH I 91 991 28 HOH HOH . H 7 HOH I 92 992 52 HOH HOH . H 7 HOH I 93 993 127 HOH HOH . H 7 HOH I 94 994 107 HOH HOH . H 7 HOH I 95 995 197 HOH HOH . H 7 HOH I 96 996 116 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C URE . . . E 5 37.393 5.196 10.981 1 24.73 ? C URE 802 I 1 HETATM 2 O O URE . . . E 5 37.403 3.83 10.98 1 18.54 ? O URE 802 I 1 HETATM 3 N N1 URE . . . E 5 36.318 5.767 10.752 1 26.06 ? N1 URE 802 I 1 HETATM 4 N N2 URE . . . E 5 38.451 6.079 11.296 1 11.51 ? N2 URE 802 I 1 # _model_server_stats.io_time_ms 31 _model_server_stats.parse_time_ms 28 _model_server_stats.create_model_time_ms 37 _model_server_stats.query_time_ms 289 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 4 #