data_7JOZ # _model_server_result.job_id WnIJu_YA1508kDVNliM9gw _model_server_result.datetime_utc '2024-10-11 02:18:04' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7joz # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":1201}' # _entry.id 7JOZ # _exptl.entry_id 7JOZ _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 363.367 _entity.id 6 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 6-{4-[(furo[3,2-c]pyridin-4-yl)oxy]-2-methylphenyl}-1,5-dimethylpyrimidine-2,4(1H,3H)-dione _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 7JOZ _cell.length_a 99.194 _cell.length_b 144.305 _cell.length_c 147.069 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7JOZ _symmetry.cell_setting ? _symmetry.Int_Tables_number 18 _symmetry.space_group_name_Hall 'P 2 2ab (y,z,x)' _symmetry.space_group_name_H-M 'P 21 2 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details pentameric _pdbx_struct_assembly.oligomeric_count 5 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 6 _struct_asym.id F _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 D SG CYS 44 N CYS 22 1_555 D SG CYS 118 N CYS 96 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? disulf ? disulf2 D SG CYS 121 N CYS 99 1_555 D SG CYS 129 N CYS 107 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.029 ? disulf ? disulf3 E SG CYS 283 R CYS 96 1_555 E SG CYS 373 R CYS 186 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.028 ? disulf ? disulf4 E SG CYS 485 R CYS 298 1_555 E SG CYS 494 R CYS 307 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? # _chem_comp.formula 'C20 H17 N3 O4' _chem_comp.formula_weight 363.367 _chem_comp.id VFP _chem_comp.mon_nstd_flag . _chem_comp.name 6-{4-[(furo[3,2-c]pyridin-4-yl)oxy]-2-methylphenyl}-1,5-dimethylpyrimidine-2,4(1H,3H)-dione _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag O3 C16 VFP doub 411 n n C19 C17 VFP sing 412 n n C14 C10 VFP sing 413 n n C16 C17 VFP sing 414 n n C16 N3 VFP sing 415 n n C17 C18 VFP doub 416 n n C10 C9 VFP doub 417 n y C10 C11 VFP sing 418 n y C9 C8 VFP sing 419 n y N3 C15 VFP sing 420 n n C18 C11 VFP sing 421 n n C18 N2 VFP sing 422 n n C11 C12 VFP doub 423 n y C8 O2 VFP sing 424 n n C8 C13 VFP doub 425 n y O2 C2 VFP sing 426 n n C15 N2 VFP sing 427 n n C15 O4 VFP doub 428 n n N2 C20 VFP sing 429 n n C12 C13 VFP sing 430 n y C7 C1 VFP sing 431 n y C7 C6 VFP doub 432 n y C2 C1 VFP doub 433 n y C2 N1 VFP sing 434 n y C1 C5 VFP sing 435 n y C6 O1 VFP sing 436 n y N1 C3 VFP doub 437 n y C5 O1 VFP sing 438 n y C5 C4 VFP doub 439 n y C3 C4 VFP sing 440 n y C6 H1 VFP sing 441 n n N3 H2 VFP sing 442 n n C4 H3 VFP sing 443 n n C12 H4 VFP sing 444 n n C13 H5 VFP sing 445 n n C14 H6 VFP sing 446 n n C14 H7 VFP sing 447 n n C14 H8 VFP sing 448 n n C19 H9 VFP sing 449 n n C19 H10 VFP sing 450 n n C19 H11 VFP sing 451 n n C20 H12 VFP sing 452 n n C20 H13 VFP sing 453 n n C20 H14 VFP sing 454 n n C3 H15 VFP sing 455 n n C7 H16 VFP sing 456 n n C9 H17 VFP sing 457 n n # _atom_sites.entry_id 7JOZ _atom_sites.fract_transf_matrix[1][1] 0.010081 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.00693 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.0068 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code F 6 VFP R 1 1201 1 VFP PF1 . G 7 1PE R 1 1202 2 1PE 1PE . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C5 VFP . . . F 6 -15.179 -78.206 -42.669 1 155.25 ? C5 VFP 1201 R 1 HETATM 2 C C6 VFP . . . F 6 -14.225 -76.246 -42.995 1 144.25 ? C6 VFP 1201 R 1 HETATM 3 N N1 VFP . . . F 6 -14.403 -80.816 -43.084 1 170.21 ? N1 VFP 1201 R 1 HETATM 4 C C2 VFP . . . F 6 -13.541 -79.811 -43.407 1 139.73 ? C2 VFP 1201 R 1 HETATM 5 N N3 VFP . . . F 6 -9.086 -87.812 -44.845 1 168.5 ? N3 VFP 1201 R 1 HETATM 6 C C4 VFP . . . F 6 -16.061 -79.231 -42.337 1 164.53 ? C4 VFP 1201 R 1 HETATM 7 C C1 VFP . . . F 6 -13.899 -78.456 -43.211 1 152.85 ? C1 VFP 1201 R 1 HETATM 8 C C10 VFP . . . F 6 -11.874 -83.562 -45.163 1 132.37 ? C10 VFP 1201 R 1 HETATM 9 C C11 VFP . . . F 6 -10.726 -83.949 -44.428 1 121.49 ? C11 VFP 1201 R 1 HETATM 10 C C12 VFP . . . F 6 -10.116 -83.041 -43.539 1 138.16 ? C12 VFP 1201 R 1 HETATM 11 C C13 VFP . . . F 6 -10.647 -81.747 -43.377 1 162.55 ? C13 VFP 1201 R 1 HETATM 12 C C14 VFP . . . F 6 -12.546 -84.524 -46.128 1 123.87 ? C14 VFP 1201 R 1 HETATM 13 C C15 VFP . . . F 6 -10.029 -87.618 -43.855 1 153.45 ? C15 VFP 1201 R 1 HETATM 14 C C16 VFP . . . F 6 -8.621 -86.845 -45.722 1 169.11 ? C16 VFP 1201 R 1 HETATM 15 C C17 VFP . . . F 6 -9.207 -85.513 -45.555 1 137.05 ? C17 VFP 1201 R 1 HETATM 16 C C18 VFP . . . F 6 -10.144 -85.298 -44.582 1 135.07 ? C18 VFP 1201 R 1 HETATM 17 C C19 VFP . . . F 6 -8.705 -84.438 -46.516 1 104.72 ? C19 VFP 1201 R 1 HETATM 18 C C20 VFP . . . F 6 -11.553 -86.187 -42.674 1 159.3 ? C20 VFP 1201 R 1 HETATM 19 C C3 VFP . . . F 6 -15.62 -80.538 -42.568 1 182.68 ? C3 VFP 1201 R 1 HETATM 20 C C7 VFP . . . F 6 -13.297 -77.168 -43.417 1 144.85 ? C7 VFP 1201 R 1 HETATM 21 C C8 VFP . . . F 6 -11.793 -81.356 -44.098 1 159.93 ? C8 VFP 1201 R 1 HETATM 22 C C9 VFP . . . F 6 -12.398 -82.263 -44.995 1 161.46 ? C9 VFP 1201 R 1 HETATM 23 N N2 VFP . . . F 6 -10.57 -86.322 -43.727 1 156.43 ? N2 VFP 1201 R 1 HETATM 24 O O1 VFP . . . F 6 -15.371 -76.846 -42.54 1 133.42 ? O1 VFP 1201 R 1 HETATM 25 O O2 VFP . . . F 6 -12.296 -80.088 -43.938 1 138.61 ? O2 VFP 1201 R 1 HETATM 26 O O3 VFP . . . F 6 -7.772 -87.155 -46.56 1 163.81 ? O3 VFP 1201 R 1 HETATM 27 O O4 VFP . . . F 6 -10.36 -88.562 -43.136 1 153.82 ? O4 VFP 1201 R 1 # _model_server_stats.io_time_ms 25 _model_server_stats.parse_time_ms 13 _model_server_stats.create_model_time_ms 8 _model_server_stats.query_time_ms 296 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 27 #