data_7JP0 # _model_server_result.job_id '_qN1yy3Jw2eOE4BtPxG54Q' _model_server_result.datetime_utc '2024-11-21 08:32:45' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7jp0 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":402}' # _entry.id 7JP0 # _exptl.entry_id 7JP0 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 78.133 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'DIMETHYL SULFOXIDE' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 101.68 _cell.angle_gamma 90 _cell.entry_id 7JP0 _cell.length_a 114.39 _cell.length_b 53.5 _cell.length_c 45.55 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7JP0 _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 1 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_556 -x,y,-z+1 -1 0 0 0 1 0 0 0 -1 -9.221391 0 44.606821 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A C GLN 127 A GLN 127 1_555 A N CSO 128 A CSO 128 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.326 ? covale ? covale2 A C CSO 128 A CSO 128 1_555 A N ALA 129 A ALA 129 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.336 ? covale ? covale3 A SG CYS 145 A CYS 145 1_555 B C10 VJA . A VJA 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.811 ? covale ? covale4 A C GLN 299 A GLN 299 1_555 A N CSO 300 A CSO 300 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? covale ? covale5 A C CSO 300 A CSO 300 1_555 A N SER 301 A SER 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.334 ? # _chem_comp.formula 'C2 H6 O S' _chem_comp.formula_weight 78.133 _chem_comp.id DMS _chem_comp.mon_nstd_flag . _chem_comp.name 'DIMETHYL SULFOXIDE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag S O DMS doub 97 n n S C1 DMS sing 98 n n S C2 DMS sing 99 n n C1 H11 DMS sing 100 n n C1 H12 DMS sing 101 n n C1 H13 DMS sing 102 n n C2 H21 DMS sing 103 n n C2 H22 DMS sing 104 n n C2 H23 DMS sing 105 n n # _atom_sites.entry_id 7JP0 _atom_sites.fract_transf_matrix[1][1] 0.008742 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.001807 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.018692 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.022418 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 VJA A 1 401 401 VJA r1 . C 3 DMS A 1 402 301 DMS DMS . D 4 HOH A 1 501 89 HOH HOH . D 4 HOH A 2 502 165 HOH HOH . D 4 HOH A 3 503 107 HOH HOH . D 4 HOH A 4 504 10 HOH HOH . D 4 HOH A 5 505 106 HOH HOH . D 4 HOH A 6 506 118 HOH HOH . D 4 HOH A 7 507 156 HOH HOH . D 4 HOH A 8 508 29 HOH HOH . D 4 HOH A 9 509 4 HOH HOH . D 4 HOH A 10 510 19 HOH HOH . D 4 HOH A 11 511 120 HOH HOH . D 4 HOH A 12 512 122 HOH HOH . D 4 HOH A 13 513 45 HOH HOH . D 4 HOH A 14 514 154 HOH HOH . D 4 HOH A 15 515 180 HOH HOH . D 4 HOH A 16 516 162 HOH HOH . D 4 HOH A 17 517 40 HOH HOH . D 4 HOH A 18 518 74 HOH HOH . D 4 HOH A 19 519 94 HOH HOH . D 4 HOH A 20 520 12 HOH HOH . D 4 HOH A 21 521 86 HOH HOH . D 4 HOH A 22 522 93 HOH HOH . D 4 HOH A 23 523 131 HOH HOH . D 4 HOH A 24 524 102 HOH HOH . D 4 HOH A 25 525 188 HOH HOH . D 4 HOH A 26 526 155 HOH HOH . D 4 HOH A 27 527 65 HOH HOH . D 4 HOH A 28 528 57 HOH HOH . D 4 HOH A 29 529 24 HOH HOH . D 4 HOH A 30 530 23 HOH HOH . D 4 HOH A 31 531 13 HOH HOH . D 4 HOH A 32 532 31 HOH HOH . D 4 HOH A 33 533 195 HOH HOH . D 4 HOH A 34 534 119 HOH HOH . D 4 HOH A 35 535 198 HOH HOH . D 4 HOH A 36 536 6 HOH HOH . D 4 HOH A 37 537 101 HOH HOH . D 4 HOH A 38 538 82 HOH HOH . D 4 HOH A 39 539 179 HOH HOH . D 4 HOH A 40 540 50 HOH HOH . D 4 HOH A 41 541 70 HOH HOH . D 4 HOH A 42 542 190 HOH HOH . D 4 HOH A 43 543 139 HOH HOH . D 4 HOH A 44 544 148 HOH HOH . D 4 HOH A 45 545 87 HOH HOH . D 4 HOH A 46 546 5 HOH HOH . D 4 HOH A 47 547 11 HOH HOH . D 4 HOH A 48 548 8 HOH HOH . D 4 HOH A 49 549 132 HOH HOH . D 4 HOH A 50 550 79 HOH HOH . D 4 HOH A 51 551 145 HOH HOH . D 4 HOH A 52 552 90 HOH HOH . D 4 HOH A 53 553 169 HOH HOH . D 4 HOH A 54 554 98 HOH HOH . D 4 HOH A 55 555 54 HOH HOH . D 4 HOH A 56 556 72 HOH HOH . D 4 HOH A 57 557 9 HOH HOH . D 4 HOH A 58 558 128 HOH HOH . D 4 HOH A 59 559 61 HOH HOH . D 4 HOH A 60 560 33 HOH HOH . D 4 HOH A 61 561 133 HOH HOH . D 4 HOH A 62 562 163 HOH HOH . D 4 HOH A 63 563 66 HOH HOH . D 4 HOH A 64 564 68 HOH HOH . D 4 HOH A 65 565 1 HOH HOH . D 4 HOH A 66 566 176 HOH HOH . D 4 HOH A 67 567 76 HOH HOH . D 4 HOH A 68 568 71 HOH HOH . D 4 HOH A 69 569 49 HOH HOH . D 4 HOH A 70 570 91 HOH HOH . D 4 HOH A 71 571 60 HOH HOH . D 4 HOH A 72 572 16 HOH HOH . D 4 HOH A 73 573 77 HOH HOH . D 4 HOH A 74 574 144 HOH HOH . D 4 HOH A 75 575 2 HOH HOH . D 4 HOH A 76 576 194 HOH HOH . D 4 HOH A 77 577 152 HOH HOH . D 4 HOH A 78 578 161 HOH HOH . D 4 HOH A 79 579 32 HOH HOH . D 4 HOH A 80 580 104 HOH HOH . D 4 HOH A 81 581 14 HOH HOH . D 4 HOH A 82 582 189 HOH HOH . D 4 HOH A 83 583 59 HOH HOH . D 4 HOH A 84 584 167 HOH HOH . D 4 HOH A 85 585 3 HOH HOH . D 4 HOH A 86 586 28 HOH HOH . D 4 HOH A 87 587 58 HOH HOH . D 4 HOH A 88 588 22 HOH HOH . D 4 HOH A 89 589 21 HOH HOH . D 4 HOH A 90 590 36 HOH HOH . D 4 HOH A 91 591 126 HOH HOH . D 4 HOH A 92 592 43 HOH HOH . D 4 HOH A 93 593 193 HOH HOH . D 4 HOH A 94 594 80 HOH HOH . D 4 HOH A 95 595 7 HOH HOH . D 4 HOH A 96 596 37 HOH HOH . D 4 HOH A 97 597 69 HOH HOH . D 4 HOH A 98 598 34 HOH HOH . D 4 HOH A 99 599 125 HOH HOH . D 4 HOH A 100 600 18 HOH HOH . D 4 HOH A 101 601 27 HOH HOH . D 4 HOH A 102 602 95 HOH HOH . D 4 HOH A 103 603 185 HOH HOH . D 4 HOH A 104 604 51 HOH HOH . D 4 HOH A 105 605 116 HOH HOH . D 4 HOH A 106 606 39 HOH HOH . D 4 HOH A 107 607 111 HOH HOH . D 4 HOH A 108 608 15 HOH HOH . D 4 HOH A 109 609 38 HOH HOH . D 4 HOH A 110 610 42 HOH HOH . D 4 HOH A 111 611 134 HOH HOH . D 4 HOH A 112 612 35 HOH HOH . D 4 HOH A 113 613 67 HOH HOH . D 4 HOH A 114 614 64 HOH HOH . D 4 HOH A 115 615 175 HOH HOH . D 4 HOH A 116 616 114 HOH HOH . D 4 HOH A 117 617 142 HOH HOH . D 4 HOH A 118 618 26 HOH HOH . D 4 HOH A 119 619 20 HOH HOH . D 4 HOH A 120 620 46 HOH HOH . D 4 HOH A 121 621 63 HOH HOH . D 4 HOH A 122 622 112 HOH HOH . D 4 HOH A 123 623 108 HOH HOH . D 4 HOH A 124 624 109 HOH HOH . D 4 HOH A 125 625 135 HOH HOH . D 4 HOH A 126 626 170 HOH HOH . D 4 HOH A 127 627 113 HOH HOH . D 4 HOH A 128 628 92 HOH HOH . D 4 HOH A 129 629 99 HOH HOH . D 4 HOH A 130 630 149 HOH HOH . D 4 HOH A 131 631 78 HOH HOH . D 4 HOH A 132 632 143 HOH HOH . D 4 HOH A 133 633 159 HOH HOH . D 4 HOH A 134 634 47 HOH HOH . D 4 HOH A 135 635 85 HOH HOH . D 4 HOH A 136 636 96 HOH HOH . D 4 HOH A 137 637 183 HOH HOH . D 4 HOH A 138 638 191 HOH HOH . D 4 HOH A 139 639 30 HOH HOH . D 4 HOH A 140 640 184 HOH HOH . D 4 HOH A 141 641 117 HOH HOH . D 4 HOH A 142 642 137 HOH HOH . D 4 HOH A 143 643 83 HOH HOH . D 4 HOH A 144 644 182 HOH HOH . D 4 HOH A 145 645 103 HOH HOH . D 4 HOH A 146 646 25 HOH HOH . D 4 HOH A 147 647 123 HOH HOH . D 4 HOH A 148 648 164 HOH HOH . D 4 HOH A 149 649 17 HOH HOH . D 4 HOH A 150 650 146 HOH HOH . D 4 HOH A 151 651 138 HOH HOH . D 4 HOH A 152 652 115 HOH HOH . D 4 HOH A 153 653 84 HOH HOH . D 4 HOH A 154 654 55 HOH HOH . D 4 HOH A 155 655 44 HOH HOH . D 4 HOH A 156 656 81 HOH HOH . D 4 HOH A 157 657 160 HOH HOH . D 4 HOH A 158 658 150 HOH HOH . D 4 HOH A 159 659 127 HOH HOH . D 4 HOH A 160 660 130 HOH HOH . D 4 HOH A 161 661 158 HOH HOH . D 4 HOH A 162 662 129 HOH HOH . D 4 HOH A 163 663 136 HOH HOH . D 4 HOH A 164 664 141 HOH HOH . D 4 HOH A 165 665 157 HOH HOH . D 4 HOH A 166 666 53 HOH HOH . D 4 HOH A 167 667 110 HOH HOH . D 4 HOH A 168 668 56 HOH HOH . D 4 HOH A 169 669 147 HOH HOH . D 4 HOH A 170 670 121 HOH HOH . D 4 HOH A 171 671 187 HOH HOH . D 4 HOH A 172 672 166 HOH HOH . D 4 HOH A 173 673 124 HOH HOH . D 4 HOH A 174 674 192 HOH HOH . D 4 HOH A 175 675 186 HOH HOH . D 4 HOH A 176 676 52 HOH HOH . D 4 HOH A 177 677 173 HOH HOH . D 4 HOH A 178 678 75 HOH HOH . D 4 HOH A 179 679 197 HOH HOH . D 4 HOH A 180 680 168 HOH HOH . D 4 HOH A 181 681 140 HOH HOH . D 4 HOH A 182 682 100 HOH HOH . D 4 HOH A 183 683 48 HOH HOH . D 4 HOH A 184 684 73 HOH HOH . D 4 HOH A 185 685 177 HOH HOH . D 4 HOH A 186 686 62 HOH HOH . D 4 HOH A 187 687 105 HOH HOH . D 4 HOH A 188 688 153 HOH HOH . D 4 HOH A 189 689 199 HOH HOH . D 4 HOH A 190 690 172 HOH HOH . D 4 HOH A 191 691 151 HOH HOH . D 4 HOH A 192 692 88 HOH HOH . D 4 HOH A 193 693 181 HOH HOH . D 4 HOH A 194 694 196 HOH HOH . D 4 HOH A 195 695 97 HOH HOH . D 4 HOH A 196 696 41 HOH HOH . D 4 HOH A 197 697 171 HOH HOH . D 4 HOH A 198 698 174 HOH HOH . D 4 HOH A 199 699 178 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 S S DMS . . . C 3 -29.772 -3.348 2.779 0 27.07 ? S DMS 402 A 1 HETATM 2 O O DMS . . . C 3 -29.647 -2.824 4.174 0 26.92 ? O DMS 402 A 1 HETATM 3 C C1 DMS . . . C 3 -31.2 -4.461 2.677 0 28.12 ? C1 DMS 402 A 1 HETATM 4 C C2 DMS . . . C 3 -30.334 -2.017 1.683 0 31.55 ? C2 DMS 402 A 1 # _model_server_stats.io_time_ms 46 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 294 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 4 #