data_7JPJ
#
_model_server_result.job_id            mXrT9Us_tzYLUQf5ucdZ1A 
_model_server_result.datetime_utc      '2024-10-13 17:15:45' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          7jpj 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"C","auth_seq_id":501}' 
#
_entry.id    7JPJ 
#
_exptl.entry_id    7JPJ 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              146.188 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            D-LYSINE 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            7JPJ 
_cell.length_a            85.78 
_cell.length_b            86.324 
_cell.length_c            127.196 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 7JPJ 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        19 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 21 21 21' 
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_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
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_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      2 
_struct_asym.id                             C 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
_chem_comp.formula           'C6 H14 N2 O2' 
_chem_comp.formula_weight    146.188 
_chem_comp.id                DLY 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              D-LYSINE 
_chem_comp.type              'd-peptide linking' 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
N CA DLY sing 83 n n 
N H DLY sing 84 n n 
N H2 DLY sing 85 n n 
CA C DLY sing 86 n n 
CA CB DLY sing 87 n n 
CA HA DLY sing 88 n n 
C O DLY doub 89 n n 
C OXT DLY sing 90 n n 
CB CG DLY sing 91 n n 
CB HB2 DLY sing 92 n n 
CB HB3 DLY sing 93 n n 
CG CD DLY sing 94 n n 
CG HG2 DLY sing 95 n n 
CG HG3 DLY sing 96 n n 
CD CE DLY sing 97 n n 
CD HD2 DLY sing 98 n n 
CD HD3 DLY sing 99 n n 
CE NZ DLY sing 100 n n 
CE HE2 DLY sing 101 n n 
CE HE3 DLY sing 102 n n 
NZ HZ1 DLY sing 103 n n 
NZ HZ2 DLY sing 104 n n 
OXT HXT DLY sing 105 n n 
#
_atom_sites.entry_id                     7JPJ 
_atom_sites.fract_transf_matrix[1][1]    0.011658 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.011584 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.007862 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 DLY A 1 501 637 DLY DLY . 
D 3 SO4 A 1 502 1 SO4 SO4 . 
E 3 SO4 A 1 503 3 SO4 SO4 . 
F 3 SO4 A 1 504 4 SO4 SO4 . 
G 3 SO4 B 1 501 2 SO4 SO4 . 
H 3 SO4 B 1 502 5 SO4 SO4 . 
I 3 SO4 B 1 503 6 SO4 SO4 . 
J 3 SO4 B 1 504 7 SO4 SO4 . 
K 4 HOH A 1 601 34 HOH HOH . 
K 4 HOH A 2 602 32 HOH HOH . 
K 4 HOH A 3 603 5 HOH HOH . 
K 4 HOH A 4 604 7 HOH HOH . 
K 4 HOH A 5 605 40 HOH HOH . 
K 4 HOH A 6 606 17 HOH HOH . 
K 4 HOH A 7 607 3 HOH HOH . 
K 4 HOH A 8 608 13 HOH HOH . 
K 4 HOH A 9 609 25 HOH HOH . 
K 4 HOH A 10 610 4 HOH HOH . 
K 4 HOH A 11 611 48 HOH HOH . 
K 4 HOH A 12 612 23 HOH HOH . 
K 4 HOH A 13 613 20 HOH HOH . 
K 4 HOH A 14 614 26 HOH HOH . 
K 4 HOH A 15 615 1 HOH HOH . 
K 4 HOH A 16 616 37 HOH HOH . 
K 4 HOH A 17 617 8 HOH HOH . 
K 4 HOH A 18 618 14 HOH HOH . 
K 4 HOH A 19 619 41 HOH HOH . 
K 4 HOH A 20 620 35 HOH HOH . 
K 4 HOH A 21 621 12 HOH HOH . 
K 4 HOH A 22 622 46 HOH HOH . 
K 4 HOH A 23 623 39 HOH HOH . 
K 4 HOH A 24 624 22 HOH HOH . 
K 4 HOH A 25 625 28 HOH HOH . 
K 4 HOH A 26 626 43 HOH HOH . 
K 4 HOH A 27 627 44 HOH HOH . 
L 4 HOH B 1 601 30 HOH HOH . 
L 4 HOH B 2 602 11 HOH HOH . 
L 4 HOH B 3 603 49 HOH HOH . 
L 4 HOH B 4 604 15 HOH HOH . 
L 4 HOH B 5 605 31 HOH HOH . 
L 4 HOH B 6 606 18 HOH HOH . 
L 4 HOH B 7 607 9 HOH HOH . 
L 4 HOH B 8 608 19 HOH HOH . 
L 4 HOH B 9 609 29 HOH HOH . 
L 4 HOH B 10 610 42 HOH HOH . 
L 4 HOH B 11 611 2 HOH HOH . 
L 4 HOH B 12 612 10 HOH HOH . 
L 4 HOH B 13 613 24 HOH HOH . 
L 4 HOH B 14 614 6 HOH HOH . 
L 4 HOH B 15 615 36 HOH HOH . 
L 4 HOH B 16 616 16 HOH HOH . 
L 4 HOH B 17 617 33 HOH HOH . 
L 4 HOH B 18 618 27 HOH HOH . 
L 4 HOH B 19 619 38 HOH HOH . 
L 4 HOH B 20 620 45 HOH HOH . 
L 4 HOH B 21 621 21 HOH HOH . 
L 4 HOH B 22 622 47 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 N N DLY . . . C 2 11.36 38.191 33.171 1 27.46 ? N DLY 501 A 1 
HETATM 2 C CA DLY . . . C 2 11.993 39.372 33.748 1 27.46 ? CA DLY 501 A 1 
HETATM 3 C C DLY . . . C 2 12.355 40.397 32.667 1 27.46 ? C DLY 501 A 1 
HETATM 4 O O DLY . . . C 2 11.979 40.266 31.496 1 27.46 ? O DLY 501 A 1 
HETATM 5 C CB DLY . . . C 2 11.074 40.006 34.796 1 27.46 ? CB DLY 501 A 1 
HETATM 6 C CG DLY . . . C 2 11.78 40.921 35.791 1 27.46 ? CG DLY 501 A 1 
HETATM 7 C CD DLY . . . C 2 10.811 41.411 36.859 1 27.46 ? CD DLY 501 A 1 
HETATM 8 C CE DLY . . . C 2 11.436 42.477 37.75 1 27.46 ? CE DLY 501 A 1 
HETATM 9 N NZ DLY . . . C 2 10.434 43.072 38.683 1 27.46 ? NZ DLY 501 A 1 
HETATM 10 O OXT DLY . . . C 2 13.038 41.389 32.939 1 27.46 ? OXT DLY 501 A 1 
#
_model_server_stats.io_time_ms              20 
_model_server_stats.parse_time_ms           11 
_model_server_stats.create_model_time_ms    7 
_model_server_stats.query_time_ms           279 
_model_server_stats.encode_time_ms          1 
_model_server_stats.element_count           10 
#