data_7JPK # _model_server_result.job_id NHd90Kb7RQ-fTYHv0FZu9Q _model_server_result.datetime_utc '2025-03-31 03:40:27' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7jpk # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"G","auth_seq_id":1904}' # _entry.id 7JPK # _exptl.entry_id 7JPK _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 748.065 _entity.id 5 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 1,2-Distearoyl-sn-glycerophosphoethanolamine _entity.pdbx_number_of_molecules 9 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 7JPK _cell.length_a 1 _cell.length_b 1 _cell.length_c 1 _cell.Z_PDB ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 7JPK _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details trimeric _pdbx_struct_assembly.oligomeric_count 3 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 5 E N N ? 5 F N N ? 5 G N N ? 5 H N N ? 5 I N N ? 5 J N N ? 5 L N N ? 5 M N N ? 5 O N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 226 A CYS 226 1_555 A SG CYS 254 A CYS 254 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? disulf ? disulf2 A SG CYS 245 A CYS 245 1_555 A SG CYS 261 A CYS 261 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.029 ? disulf ? disulf3 A SG CYS 957 A CYS 957 1_555 A SG CYS 968 A CYS 968 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.026 ? disulf ? disulf4 A SG CYS 1338 A CYS 1338 1_555 A SG CYS 1352 A CYS 1352 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? disulf ? disulf5 B SG CYS 57 E CYS 57 1_555 B SG CYS 80 E CYS 80 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.029 ? disulf ? disulf6 C SG CYS 305 F CYS 305 1_555 C SG CYS 1046 F CYS 1047 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? disulf ? disulf7 C SG CYS 356 F CYS 356 1_555 C SG CYS 1061 F CYS 1062 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? disulf ? disulf8 C SG CYS 406 F CYS 406 1_555 C SG CYS 1073 F CYS 1074 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? disulf ? disulf9 C SG CYS 669 F CYS 670 1_555 C SG CYS 699 F CYS 700 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.028 ? disulf ? disulf10 C SG CYS 843 F CYS 844 1_555 C SG CYS 852 F CYS 853 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? disulf ? disulf11 C SG CYS 906 F CYS 907 1_555 C SG CYS 976 F CYS 977 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? disulf ? disulf12 C SG CYS 998 F CYS 999 1_555 C SG CYS 1028 F CYS 1029 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.029 ? disulf ? disulf13 C SG CYS 1001 F CYS 1002 1_555 C SG CYS 1026 F CYS 1027 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.028 ? metalc ? metalc1 A OE1 GLU 292 A GLU 292 1_555 D CA CA . A CA 1901 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.067 ? metalc ? metalc2 A OE2 GLU 292 A GLU 292 1_555 D CA CA . A CA 1901 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.048 ? metalc ? metalc3 A OE1 GLU 614 A GLU 614 1_555 D CA CA . A CA 1901 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.871 ? metalc ? metalc4 A OE1 GLU 1014 A GLU 1014 1_555 D CA CA . A CA 1901 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.747 ? metalc ? metalc5 A OE2 GLU 1014 A GLU 1014 1_555 D CA CA . A CA 1901 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.488 ? # _chem_comp.formula 'C41 H82 N O8 P' _chem_comp.formula_weight 748.065 _chem_comp.id 3PE _chem_comp.mon_nstd_flag . _chem_comp.name 1,2-Distearoyl-sn-glycerophosphoethanolamine _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 3-SN-PHOSPHATIDYLETHANOLAMINE;1,2-DIACYL-SN-GLYCERO-3-PHOSPHOETHANOLAMINE # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag P O11 3PE sing 1 n n P O12 3PE sing 2 n n P O13 3PE sing 3 n n P O14 3PE doub 4 n n N C12 3PE sing 5 n n N HN1 3PE sing 6 n n N HN2 3PE sing 7 n n O11 C1 3PE sing 8 n n O13 C11 3PE sing 9 n n C11 C12 3PE sing 10 n n C11 H111 3PE sing 11 n n C11 H112 3PE sing 12 n n C12 H121 3PE sing 13 n n C12 H122 3PE sing 14 n n C1 C2 3PE sing 15 n n C1 H11 3PE sing 16 n n C1 H12 3PE sing 17 n n C2 C3 3PE sing 18 n n C2 O21 3PE sing 19 n n C2 H2 3PE sing 20 n n C3 O31 3PE sing 21 n n C3 H31 3PE sing 22 n n C3 H32 3PE sing 23 n n O31 C31 3PE sing 24 n n O32 C31 3PE doub 25 n n C31 C32 3PE sing 26 n n C32 C33 3PE sing 27 n n C32 H321 3PE sing 28 n n C32 H322 3PE sing 29 n n C33 C34 3PE sing 30 n n C33 H331 3PE sing 31 n n C33 H332 3PE sing 32 n n C34 C35 3PE sing 33 n n C34 H341 3PE sing 34 n n C34 H342 3PE sing 35 n n C35 C36 3PE sing 36 n n C35 H351 3PE sing 37 n n C35 H352 3PE sing 38 n n C36 C37 3PE sing 39 n n C36 H361 3PE sing 40 n n C36 H362 3PE sing 41 n n C37 C38 3PE sing 42 n n C37 H371 3PE sing 43 n n C37 H372 3PE sing 44 n n C38 C39 3PE sing 45 n n C38 H381 3PE sing 46 n n C38 H382 3PE sing 47 n n C39 C3A 3PE sing 48 n n C39 H391 3PE sing 49 n n C39 H392 3PE sing 50 n n C3A C3B 3PE sing 51 n n C3A H3A1 3PE sing 52 n n C3A H3A2 3PE sing 53 n n C3B C3C 3PE sing 54 n n C3B H3B1 3PE sing 55 n n C3B H3B2 3PE sing 56 n n C3C C3D 3PE sing 57 n n C3C H3C1 3PE sing 58 n n C3C H3C2 3PE sing 59 n n C3D C3E 3PE sing 60 n n C3D H3D1 3PE sing 61 n n C3D H3D2 3PE sing 62 n n C3E C3F 3PE sing 63 n n C3E H3E1 3PE sing 64 n n C3E H3E2 3PE sing 65 n n C3F C3G 3PE sing 66 n n C3F H3F1 3PE sing 67 n n C3F H3F2 3PE sing 68 n n C3G C3H 3PE sing 69 n n C3G H3G1 3PE sing 70 n n C3G H3G2 3PE sing 71 n n C3H C3I 3PE sing 72 n n C3H H3H1 3PE sing 73 n n C3H H3H2 3PE sing 74 n n C3I H3I1 3PE sing 75 n n C3I H3I2 3PE sing 76 n n C3I H3I3 3PE sing 77 n n O21 C21 3PE sing 78 n n O22 C21 3PE doub 79 n n C21 C22 3PE sing 80 n n C22 C23 3PE sing 81 n n C22 H221 3PE sing 82 n n C22 H222 3PE sing 83 n n C23 C24 3PE sing 84 n n C23 H231 3PE sing 85 n n C23 H232 3PE sing 86 n n C24 C25 3PE sing 87 n n C24 H241 3PE sing 88 n n C24 H242 3PE sing 89 n n C25 C26 3PE sing 90 n n C25 H251 3PE sing 91 n n C25 H252 3PE sing 92 n n C26 C27 3PE sing 93 n n C26 H261 3PE sing 94 n n C26 H262 3PE sing 95 n n C27 C28 3PE sing 96 n n C27 H271 3PE sing 97 n n C27 H272 3PE sing 98 n n C28 C29 3PE sing 99 n n C28 H281 3PE sing 100 n n C28 H282 3PE sing 101 n n C29 C2A 3PE sing 102 n n C29 H291 3PE sing 103 n n C29 H292 3PE sing 104 n n C2A C2B 3PE sing 105 n n C2A H2A1 3PE sing 106 n n C2A H2A2 3PE sing 107 n n C2B C2C 3PE sing 108 n n C2B H2B1 3PE sing 109 n n C2B H2B2 3PE sing 110 n n C2C C2D 3PE sing 111 n n C2C H2C1 3PE sing 112 n n C2C H2C2 3PE sing 113 n n C2D C2E 3PE sing 114 n n C2D H2D1 3PE sing 115 n n C2D H2D2 3PE sing 116 n n C2E C2F 3PE sing 117 n n C2E H2E1 3PE sing 118 n n C2E H2E2 3PE sing 119 n n C2F C2G 3PE sing 120 n n C2F H2F1 3PE sing 121 n n C2F H2F2 3PE sing 122 n n C2G C2H 3PE sing 123 n n C2G H2G1 3PE sing 124 n n C2G H2G2 3PE sing 125 n n C2H C2I 3PE sing 126 n n C2H H2H1 3PE sing 127 n n C2H H2H2 3PE sing 128 n n C2I H2I1 3PE sing 129 n n C2I H2I2 3PE sing 130 n n C2I H2I3 3PE sing 131 n n O12 H1 3PE sing 132 n n # _atom_sites.entry_id 7JPK _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code D 4 CA A 1 1901 1902 CA CA . E 5 3PE A 1 1902 1904 3PE 3PE . F 5 3PE A 1 1903 1905 3PE 3PE . G 5 3PE A 1 1904 1906 3PE 3PE . H 5 3PE A 1 1905 1907 3PE 3PE . I 5 3PE A 1 1906 1908 3PE 3PE . J 5 3PE A 1 1907 1909 3PE 3PE . K 6 PC1 A 1 1908 1910 PC1 PC1 . L 5 3PE A 1 1909 1911 3PE 3PE . M 5 3PE A 1 1910 1912 3PE 3PE . N 7 C8U A 1 1911 2001 C8U LIG . O 5 3PE E 1 301 1903 3PE 3PE . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P P 3PE . . . G 5 157.942 131.763 150.717 1 20 ? P 3PE 1904 A 1 HETATM 2 N N 3PE . . . G 5 159.766 128.244 150.536 1 20 ? N 3PE 1904 A 1 HETATM 3 O O11 3PE . . . G 5 157.497 131.817 149.175 1 20 ? O11 3PE 1904 A 1 HETATM 4 O O12 3PE . . . G 5 157.022 130.806 151.434 1 20 ? O12 3PE 1904 A 1 HETATM 5 O O13 3PE . . . G 5 159.411 131.107 150.656 1 20 ? O13 3PE 1904 A 1 HETATM 6 O O14 3PE . . . G 5 158.084 133.189 151.19 1 20 ? O14 3PE 1904 A 1 HETATM 7 C C11 3PE . . . G 5 159.931 130.381 151.767 1 20 ? C11 3PE 1904 A 1 HETATM 8 C C12 3PE . . . G 5 160.687 129.157 151.267 1 20 ? C12 3PE 1904 A 1 HETATM 9 C C1 3PE . . . G 5 157.233 133.071 148.555 1 20 ? C1 3PE 1904 A 1 HETATM 10 C C2 3PE . . . G 5 155.847 133.57 148.948 1 20 ? C2 3PE 1904 A 1 HETATM 11 C C3 3PE . . . G 5 154.92 132.388 149.22 1 20 ? C3 3PE 1904 A 1 HETATM 12 O O31 3PE . . . G 5 154.01 132.224 148.133 1 20 ? O31 3PE 1904 A 1 HETATM 13 O O32 3PE . . . G 5 152.938 130.181 148.166 1 20 ? O32 3PE 1904 A 1 HETATM 14 C C31 3PE . . . G 5 152.825 131.391 148.268 1 20 ? C31 3PE 1904 A 1 HETATM 15 C C32 3PE . . . G 5 151.474 132.017 148.528 1 20 ? C32 3PE 1904 A 1 HETATM 16 C C33 3PE . . . G 5 150.809 132.416 147.213 1 20 ? C33 3PE 1904 A 1 HETATM 17 C C34 3PE . . . G 5 150.81 133.93 147.03 1 20 ? C34 3PE 1904 A 1 HETATM 18 C C35 3PE . . . G 5 149.394 134.494 146.997 1 20 ? C35 3PE 1904 A 1 HETATM 19 C C36 3PE . . . G 5 149.384 135.965 147.4 1 20 ? C36 3PE 1904 A 1 HETATM 20 C C37 3PE . . . G 5 148.517 136.79 146.456 1 20 ? C37 3PE 1904 A 1 HETATM 21 C C38 3PE . . . G 5 148.23 138.174 147.03 1 20 ? C38 3PE 1904 A 1 HETATM 22 C C39 3PE . . . G 5 147.056 138.829 146.313 1 20 ? C39 3PE 1904 A 1 HETATM 23 C C3A 3PE . . . G 5 146.735 140.199 146.898 1 20 ? C3A 3PE 1904 A 1 HETATM 24 C C3B 3PE . . . G 5 145.339 140.651 146.483 1 20 ? C3B 3PE 1904 A 1 HETATM 25 C C3C 3PE . . . G 5 145.326 142.117 146.065 1 20 ? C3C 3PE 1904 A 1 HETATM 26 C C3D 3PE . . . G 5 144.02 142.79 146.472 1 20 ? C3D 3PE 1904 A 1 HETATM 27 C C3E 3PE . . . G 5 143.541 143.775 145.412 1 20 ? C3E 3PE 1904 A 1 HETATM 28 C C3F 3PE . . . G 5 142.577 144.796 146.009 1 20 ? C3F 3PE 1904 A 1 HETATM 29 C C3G 3PE . . . G 5 141.29 144.892 145.198 1 20 ? C3G 3PE 1904 A 1 HETATM 30 C C3H 3PE . . . G 5 141.043 146.32 144.717 1 20 ? C3H 3PE 1904 A 1 HETATM 31 C C3I 3PE . . . G 5 139.573 146.571 144.455 1 20 ? C3I 3PE 1904 A 1 HETATM 32 O O21 3PE . . . G 5 155.957 134.386 150.112 1 20 ? O21 3PE 1904 A 1 HETATM 33 O O22 3PE . . . G 5 155.71 136.625 150.561 1 20 ? O22 3PE 1904 A 1 HETATM 34 C C21 3PE . . . G 5 155.254 135.652 149.994 1 20 ? C21 3PE 1904 A 1 HETATM 35 C C22 3PE . . . G 5 153.981 135.773 149.195 1 20 ? C22 3PE 1904 A 1 HETATM 36 C C23 3PE . . . G 5 153.488 137.212 149.263 1 20 ? C23 3PE 1904 A 1 HETATM 37 C C24 3PE . . . G 5 153.267 137.789 147.87 1 20 ? C24 3PE 1904 A 1 HETATM 38 C C25 3PE . . . G 5 152.512 139.109 147.945 1 20 ? C25 3PE 1904 A 1 HETATM 39 C C26 3PE . . . G 5 152.77 139.967 146.714 1 20 ? C26 3PE 1904 A 1 HETATM 40 C C27 3PE . . . G 5 152.011 141.283 146.807 1 20 ? C27 3PE 1904 A 1 HETATM 41 C C28 3PE . . . G 5 152.157 142.09 145.525 1 20 ? C28 3PE 1904 A 1 HETATM 42 C C29 3PE . . . G 5 150.829 142.197 144.789 1 20 ? C29 3PE 1904 A 1 HETATM 43 C C2A 3PE . . . G 5 150.268 143.608 144.891 1 20 ? C2A 3PE 1904 A 1 HETATM 44 C C2B 3PE . . . G 5 150.208 144.271 143.522 1 20 ? C2B 3PE 1904 A 1 HETATM 45 C C2C 3PE . . . G 5 148.762 144.487 143.093 1 20 ? C2C 3PE 1904 A 1 HETATM 46 C C2D 3PE . . . G 5 148.46 145.959 142.847 1 20 ? C2D 3PE 1904 A 1 HETATM 47 C C2E 3PE . . . G 5 146.964 146.171 142.638 1 20 ? C2E 3PE 1904 A 1 HETATM 48 C C2F 3PE . . . G 5 146.684 147.513 141.974 1 20 ? C2F 3PE 1904 A 1 HETATM 49 C C2G 3PE . . . G 5 145.259 147.579 141.434 1 20 ? C2G 3PE 1904 A 1 HETATM 50 C C2H 3PE . . . G 5 144.727 149.007 141.476 1 20 ? C2H 3PE 1904 A 1 HETATM 51 C C2I 3PE . . . G 5 143.233 149.032 141.718 1 20 ? C2I 3PE 1904 A 1 # _model_server_stats.io_time_ms 13 _model_server_stats.parse_time_ms 24 _model_server_stats.create_model_time_ms 22 _model_server_stats.query_time_ms 321 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 51 #