data_7JPK # _model_server_result.job_id IcsVnlV-eWWzUB5b0GJqgA _model_server_result.datetime_utc '2025-04-04 01:30:39' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7jpk # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"K","auth_seq_id":1908}' # _entry.id 7JPK # _exptl.entry_id 7JPK _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 790.145 _entity.id 6 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 1,2-DIACYL-SN-GLYCERO-3-PHOSPHOCHOLINE _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 7JPK _cell.length_a 1 _cell.length_b 1 _cell.length_c 1 _cell.Z_PDB ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 7JPK _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details trimeric _pdbx_struct_assembly.oligomeric_count 3 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 6 _struct_asym.id K _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 226 A CYS 226 1_555 A SG CYS 254 A CYS 254 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? disulf ? disulf2 A SG CYS 245 A CYS 245 1_555 A SG CYS 261 A CYS 261 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.029 ? disulf ? disulf3 A SG CYS 957 A CYS 957 1_555 A SG CYS 968 A CYS 968 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.026 ? disulf ? disulf4 A SG CYS 1338 A CYS 1338 1_555 A SG CYS 1352 A CYS 1352 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? disulf ? disulf5 B SG CYS 57 E CYS 57 1_555 B SG CYS 80 E CYS 80 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.029 ? disulf ? disulf6 C SG CYS 305 F CYS 305 1_555 C SG CYS 1046 F CYS 1047 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? disulf ? disulf7 C SG CYS 356 F CYS 356 1_555 C SG CYS 1061 F CYS 1062 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? disulf ? disulf8 C SG CYS 406 F CYS 406 1_555 C SG CYS 1073 F CYS 1074 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? disulf ? disulf9 C SG CYS 669 F CYS 670 1_555 C SG CYS 699 F CYS 700 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.028 ? disulf ? disulf10 C SG CYS 843 F CYS 844 1_555 C SG CYS 852 F CYS 853 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? disulf ? disulf11 C SG CYS 906 F CYS 907 1_555 C SG CYS 976 F CYS 977 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? disulf ? disulf12 C SG CYS 998 F CYS 999 1_555 C SG CYS 1028 F CYS 1029 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.029 ? disulf ? disulf13 C SG CYS 1001 F CYS 1002 1_555 C SG CYS 1026 F CYS 1027 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.028 ? metalc ? metalc1 A OE1 GLU 292 A GLU 292 1_555 D CA CA . A CA 1901 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.067 ? metalc ? metalc2 A OE2 GLU 292 A GLU 292 1_555 D CA CA . A CA 1901 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.048 ? metalc ? metalc3 A OE1 GLU 614 A GLU 614 1_555 D CA CA . A CA 1901 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.871 ? metalc ? metalc4 A OE1 GLU 1014 A GLU 1014 1_555 D CA CA . A CA 1901 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.747 ? metalc ? metalc5 A OE2 GLU 1014 A GLU 1014 1_555 D CA CA . A CA 1901 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.488 ? # _chem_comp.formula 'C44 H88 N O8 P' _chem_comp.formula_weight 790.145 _chem_comp.id PC1 _chem_comp.mon_nstd_flag . _chem_comp.name 1,2-DIACYL-SN-GLYCERO-3-PHOSPHOCHOLINE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 3-SN-PHOSPHATIDYLCHOLINE # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag O12 P PC1 sing 408 n n P O14 PC1 doub 409 n n P O13 PC1 sing 410 n n P O11 PC1 sing 411 n n O13 C11 PC1 sing 412 n n C11 C12 PC1 sing 413 n n C11 H111 PC1 sing 414 n n C11 H112 PC1 sing 415 n n C12 N PC1 sing 416 n n C12 H121 PC1 sing 417 n n C12 H122 PC1 sing 418 n n N C13 PC1 sing 419 n n N C14 PC1 sing 420 n n N C15 PC1 sing 421 n n C13 H131 PC1 sing 422 n n C13 H132 PC1 sing 423 n n C13 H133 PC1 sing 424 n n C14 H141 PC1 sing 425 n n C14 H142 PC1 sing 426 n n C14 H143 PC1 sing 427 n n C15 H151 PC1 sing 428 n n C15 H152 PC1 sing 429 n n C15 H153 PC1 sing 430 n n O11 C1 PC1 sing 431 n n C1 C2 PC1 sing 432 n n C1 H11 PC1 sing 433 n n C1 H12 PC1 sing 434 n n C2 O21 PC1 sing 435 n n C2 C3 PC1 sing 436 n n C2 H2 PC1 sing 437 n n O21 C21 PC1 sing 438 n n C21 O22 PC1 doub 439 n n C21 C22 PC1 sing 440 n n C22 C23 PC1 sing 441 n n C22 H221 PC1 sing 442 n n C22 H222 PC1 sing 443 n n C23 C24 PC1 sing 444 n n C23 H231 PC1 sing 445 n n C23 H232 PC1 sing 446 n n C24 C25 PC1 sing 447 n n C24 H241 PC1 sing 448 n n C24 H242 PC1 sing 449 n n C25 C26 PC1 sing 450 n n C25 H251 PC1 sing 451 n n C25 H252 PC1 sing 452 n n C26 C27 PC1 sing 453 n n C26 H261 PC1 sing 454 n n C26 H262 PC1 sing 455 n n C27 C28 PC1 sing 456 n n C27 H271 PC1 sing 457 n n C27 H272 PC1 sing 458 n n C28 C29 PC1 sing 459 n n C28 H281 PC1 sing 460 n n C28 H282 PC1 sing 461 n n C29 C2A PC1 sing 462 n n C29 H291 PC1 sing 463 n n C29 H292 PC1 sing 464 n n C2A C2B PC1 sing 465 n n C2A H2A1 PC1 sing 466 n n C2A H2A2 PC1 sing 467 n n C2B C2C PC1 sing 468 n n C2B H2B1 PC1 sing 469 n n C2B H2B2 PC1 sing 470 n n C2C C2D PC1 sing 471 n n C2C H2C1 PC1 sing 472 n n C2C H2C2 PC1 sing 473 n n C2D C2E PC1 sing 474 n n C2D H2D1 PC1 sing 475 n n C2D H2D2 PC1 sing 476 n n C2E C2F PC1 sing 477 n n C2E H2E1 PC1 sing 478 n n C2E H2E2 PC1 sing 479 n n C2F C2G PC1 sing 480 n n C2F H2F1 PC1 sing 481 n n C2F H2F2 PC1 sing 482 n n C2G C2H PC1 sing 483 n n C2G H2G1 PC1 sing 484 n n C2G H2G2 PC1 sing 485 n n C2H C2I PC1 sing 486 n n C2H H2H1 PC1 sing 487 n n C2H H2H2 PC1 sing 488 n n C2I H2I1 PC1 sing 489 n n C2I H2I2 PC1 sing 490 n n C2I H2I3 PC1 sing 491 n n C3 O31 PC1 sing 492 n n C3 H31 PC1 sing 493 n n C3 H32 PC1 sing 494 n n O31 C31 PC1 sing 495 n n C31 O32 PC1 doub 496 n n C31 C32 PC1 sing 497 n n C32 C33 PC1 sing 498 n n C32 H321 PC1 sing 499 n n C32 H322 PC1 sing 500 n n C33 C34 PC1 sing 501 n n C33 H331 PC1 sing 502 n n C33 H332 PC1 sing 503 n n C34 C35 PC1 sing 504 n n C34 H341 PC1 sing 505 n n C34 H342 PC1 sing 506 n n C35 C36 PC1 sing 507 n n C35 H351 PC1 sing 508 n n C35 H352 PC1 sing 509 n n C36 C37 PC1 sing 510 n n C36 H361 PC1 sing 511 n n C36 H362 PC1 sing 512 n n C37 C38 PC1 sing 513 n n C37 H371 PC1 sing 514 n n C37 H372 PC1 sing 515 n n C38 C39 PC1 sing 516 n n C38 H381 PC1 sing 517 n n C38 H382 PC1 sing 518 n n C39 C3A PC1 sing 519 n n C39 H391 PC1 sing 520 n n C39 H392 PC1 sing 521 n n C3A C3B PC1 sing 522 n n C3A H3A1 PC1 sing 523 n n C3A H3A2 PC1 sing 524 n n C3B C3C PC1 sing 525 n n C3B H3B1 PC1 sing 526 n n C3B H3B2 PC1 sing 527 n n C3C C3D PC1 sing 528 n n C3C H3C1 PC1 sing 529 n n C3C H3C2 PC1 sing 530 n n C3D C3E PC1 sing 531 n n C3D H3D1 PC1 sing 532 n n C3D H3D2 PC1 sing 533 n n C3E C3F PC1 sing 534 n n C3E H3E1 PC1 sing 535 n n C3E H3E2 PC1 sing 536 n n C3F C3G PC1 sing 537 n n C3F H3F1 PC1 sing 538 n n C3F H3F2 PC1 sing 539 n n C3G C3H PC1 sing 540 n n C3G H3G1 PC1 sing 541 n n C3G H3G2 PC1 sing 542 n n C3H C3I PC1 sing 543 n n C3H H3H1 PC1 sing 544 n n C3H H3H2 PC1 sing 545 n n C3I H3I1 PC1 sing 546 n n C3I H3I2 PC1 sing 547 n n C3I H3I3 PC1 sing 548 n n # _atom_sites.entry_id 7JPK _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code D 4 CA A 1 1901 1902 CA CA . E 5 3PE A 1 1902 1904 3PE 3PE . F 5 3PE A 1 1903 1905 3PE 3PE . G 5 3PE A 1 1904 1906 3PE 3PE . H 5 3PE A 1 1905 1907 3PE 3PE . I 5 3PE A 1 1906 1908 3PE 3PE . J 5 3PE A 1 1907 1909 3PE 3PE . K 6 PC1 A 1 1908 1910 PC1 PC1 . L 5 3PE A 1 1909 1911 3PE 3PE . M 5 3PE A 1 1910 1912 3PE 3PE . N 7 C8U A 1 1911 2001 C8U LIG . O 5 3PE E 1 301 1903 3PE 3PE . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 O O12 PC1 . . . K 6 177.669 145.964 142.407 1 20 ? O12 PC1 1908 A 1 HETATM 2 P P PC1 . . . K 6 177.055 144.812 141.648 1 20 ? P PC1 1908 A 1 HETATM 3 O O14 PC1 . . . K 6 177.627 144.39 140.316 1 20 ? O14 PC1 1908 A 1 HETATM 4 O O13 PC1 . . . K 6 177.052 143.528 142.615 1 20 ? O13 PC1 1908 A 1 HETATM 5 C C11 PC1 . . . K 6 178.193 142.674 142.675 1 20 ? C11 PC1 1908 A 1 HETATM 6 C C12 PC1 . . . K 6 179.457 143.516 142.803 1 20 ? C12 PC1 1908 A 1 HETATM 7 N N PC1 . . . K 6 180.497 142.999 141.902 1 20 ? N PC1 1908 A 1 HETATM 8 C C13 PC1 . . . K 6 179.881 142.545 140.65 1 20 ? C13 PC1 1908 A 1 HETATM 9 C C14 PC1 . . . K 6 181.465 144.065 141.607 1 20 ? C14 PC1 1908 A 1 HETATM 10 C C15 PC1 . . . K 6 181.188 141.874 142.545 1 20 ? C15 PC1 1908 A 1 HETATM 11 O O11 PC1 . . . K 6 175.49 145.119 141.438 1 20 ? O11 PC1 1908 A 1 HETATM 12 C C1 PC1 . . . K 6 175.006 146.458 141.519 1 20 ? C1 PC1 1908 A 1 HETATM 13 C C2 PC1 . . . K 6 173.951 146.688 140.445 1 20 ? C2 PC1 1908 A 1 HETATM 14 O O21 PC1 . . . K 6 174.381 147.747 139.59 1 20 ? O21 PC1 1908 A 1 HETATM 15 C C21 PC1 . . . K 6 174.871 147.281 138.3 1 20 ? C21 PC1 1908 A 1 HETATM 16 O O22 PC1 . . . K 6 174.931 146.086 138.072 1 20 ? O22 PC1 1908 A 1 HETATM 17 C C22 PC1 . . . K 6 175.303 148.279 137.253 1 20 ? C22 PC1 1908 A 1 HETATM 18 C C23 PC1 . . . K 6 174.098 149.091 136.794 1 20 ? C23 PC1 1908 A 1 HETATM 19 C C24 PC1 . . . K 6 174.539 150.411 136.176 1 20 ? C24 PC1 1908 A 1 HETATM 20 C C25 PC1 . . . K 6 173.834 150.662 134.85 1 20 ? C25 PC1 1908 A 1 HETATM 21 C C26 PC1 . . . K 6 172.337 150.406 134.961 1 20 ? C26 PC1 1908 A 1 HETATM 22 C C27 PC1 . . . K 6 171.557 151.713 134.911 1 20 ? C27 PC1 1908 A 1 HETATM 23 C C28 PC1 . . . K 6 170.773 151.839 133.611 1 20 ? C28 PC1 1908 A 1 HETATM 24 C C29 PC1 . . . K 6 169.598 150.869 133.583 1 20 ? C29 PC1 1908 A 1 HETATM 25 C C2A PC1 . . . K 6 168.569 151.282 132.537 1 20 ? C2A PC1 1908 A 1 HETATM 26 C C2B PC1 . . . K 6 168.313 152.784 132.581 1 20 ? C2B PC1 1908 A 1 HETATM 27 C C2C PC1 . . . K 6 166.841 153.094 132.345 1 20 ? C2C PC1 1908 A 1 HETATM 28 C C2D PC1 . . . K 6 166.26 153.919 133.487 1 20 ? C2D PC1 1908 A 1 HETATM 29 C C2E PC1 . . . K 6 164.791 153.584 133.713 1 20 ? C2E PC1 1908 A 1 HETATM 30 C C2F PC1 . . . K 6 164.031 153.505 132.394 1 20 ? C2F PC1 1908 A 1 HETATM 31 C C2G PC1 . . . K 6 162.778 154.37 132.43 1 20 ? C2G PC1 1908 A 1 HETATM 32 C C2H PC1 . . . K 6 161.6 153.605 133.021 1 20 ? C2H PC1 1908 A 1 HETATM 33 C C2I PC1 . . . K 6 160.682 154.53 133.79 1 20 ? C2I PC1 1908 A 1 HETATM 34 C C3 PC1 . . . K 6 172.607 147.002 141.103 1 20 ? C3 PC1 1908 A 1 HETATM 35 O O31 PC1 . . . K 6 172.288 148.39 141.056 1 20 ? O31 PC1 1908 A 1 HETATM 36 C C31 PC1 . . . K 6 171.689 148.962 139.861 1 20 ? C31 PC1 1908 A 1 HETATM 37 O O32 PC1 . . . K 6 172.384 149.172 138.885 1 20 ? O32 PC1 1908 A 1 HETATM 38 C C32 PC1 . . . K 6 170.223 149.3 139.811 1 20 ? C32 PC1 1908 A 1 HETATM 39 C C33 PC1 . . . K 6 169.805 149.462 138.356 1 20 ? C33 PC1 1908 A 1 HETATM 40 C C34 PC1 . . . K 6 168.297 149.308 138.219 1 20 ? C34 PC1 1908 A 1 HETATM 41 C C35 PC1 . . . K 6 167.881 149.183 136.762 1 20 ? C35 PC1 1908 A 1 HETATM 42 C C36 PC1 . . . K 6 167.083 150.404 136.328 1 20 ? C36 PC1 1908 A 1 HETATM 43 C C37 PC1 . . . K 6 165.588 150.152 136.45 1 20 ? C37 PC1 1908 A 1 HETATM 44 C C38 PC1 . . . K 6 165.068 149.361 135.259 1 20 ? C38 PC1 1908 A 1 HETATM 45 C C39 PC1 . . . K 6 163.911 150.089 134.59 1 20 ? C39 PC1 1908 A 1 HETATM 46 C C3A PC1 . . . K 6 162.591 149.378 134.864 1 20 ? C3A PC1 1908 A 1 HETATM 47 C C3B PC1 . . . K 6 161.84 149.079 133.574 1 20 ? C3B PC1 1908 A 1 HETATM 48 C C3C PC1 . . . K 6 161.398 150.36 132.882 1 20 ? C3C PC1 1908 A 1 HETATM 49 C C3D PC1 . . . K 6 159.894 150.351 132.651 1 20 ? C3D PC1 1908 A 1 HETATM 50 C C3E PC1 . . . K 6 159.215 149.364 133.591 1 20 ? C3E PC1 1908 A 1 HETATM 51 C C3F PC1 . . . K 6 157.709 149.346 133.367 1 20 ? C3F PC1 1908 A 1 HETATM 52 C C3G PC1 . . . K 6 157.361 149.777 131.947 1 20 ? C3G PC1 1908 A 1 HETATM 53 C C3H PC1 . . . K 6 155.988 149.254 131.547 1 20 ? C3H PC1 1908 A 1 HETATM 54 C C3I PC1 . . . K 6 155.607 148.057 132.391 1 20 ? C3I PC1 1908 A 1 # _model_server_stats.io_time_ms 16 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 22 _model_server_stats.query_time_ms 295 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 54 #