data_7JPK # _model_server_result.job_id H2mlNCDXUOLq3oWUtVpODw _model_server_result.datetime_utc '2025-07-13 23:00:09' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7jpk # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"N","auth_seq_id":1911}' # _entry.id 7JPK # _exptl.entry_id 7JPK _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 356.297 _entity.id 7 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'methyl (4~{S})-2,6-dimethyl-5-nitro-4-[2-(trifluoromethyl)phenyl]-1,4-dihydropyridine-3-carboxylate' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 7JPK _cell.length_a 1 _cell.length_b 1 _cell.length_c 1 _cell.Z_PDB ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 7JPK _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details trimeric _pdbx_struct_assembly.oligomeric_count 3 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 7 _struct_asym.id N _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 226 A CYS 226 1_555 A SG CYS 254 A CYS 254 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? disulf ? disulf2 A SG CYS 245 A CYS 245 1_555 A SG CYS 261 A CYS 261 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.029 ? disulf ? disulf3 A SG CYS 957 A CYS 957 1_555 A SG CYS 968 A CYS 968 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.026 ? disulf ? disulf4 A SG CYS 1338 A CYS 1338 1_555 A SG CYS 1352 A CYS 1352 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? disulf ? disulf5 B SG CYS 57 E CYS 57 1_555 B SG CYS 80 E CYS 80 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.029 ? disulf ? disulf6 C SG CYS 305 F CYS 305 1_555 C SG CYS 1046 F CYS 1047 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? disulf ? disulf7 C SG CYS 356 F CYS 356 1_555 C SG CYS 1061 F CYS 1062 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? disulf ? disulf8 C SG CYS 406 F CYS 406 1_555 C SG CYS 1073 F CYS 1074 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? disulf ? disulf9 C SG CYS 669 F CYS 670 1_555 C SG CYS 699 F CYS 700 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.028 ? disulf ? disulf10 C SG CYS 843 F CYS 844 1_555 C SG CYS 852 F CYS 853 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? disulf ? disulf11 C SG CYS 906 F CYS 907 1_555 C SG CYS 976 F CYS 977 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? disulf ? disulf12 C SG CYS 998 F CYS 999 1_555 C SG CYS 1028 F CYS 1029 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.029 ? disulf ? disulf13 C SG CYS 1001 F CYS 1002 1_555 C SG CYS 1026 F CYS 1027 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.028 ? metalc ? metalc1 A OE1 GLU 292 A GLU 292 1_555 D CA CA . A CA 1901 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.067 ? metalc ? metalc2 A OE2 GLU 292 A GLU 292 1_555 D CA CA . A CA 1901 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.048 ? metalc ? metalc3 A OE1 GLU 614 A GLU 614 1_555 D CA CA . A CA 1901 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.871 ? metalc ? metalc4 A OE1 GLU 1014 A GLU 1014 1_555 D CA CA . A CA 1901 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.747 ? metalc ? metalc5 A OE2 GLU 1014 A GLU 1014 1_555 D CA CA . A CA 1901 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.488 ? # _chem_comp.formula 'C16 H15 F3 N2 O4' _chem_comp.formula_weight 356.297 _chem_comp.id C8U _chem_comp.mon_nstd_flag . _chem_comp.name 'methyl (4~{S})-2,6-dimethyl-5-nitro-4-[2-(trifluoromethyl)phenyl]-1,4-dihydropyridine-3-carboxylate' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag F20 C18 C8U sing 202 n n O10 N09 C8U doub 203 n n F19 C18 C8U sing 204 n n C16 C15 C8U doub 205 n y C16 C17 C8U sing 206 n y C18 C17 C8U sing 207 n n C18 F21 C8U sing 208 n n C15 C14 C8U sing 209 n y C17 C12 C8U doub 210 n y N09 O11 C8U sing 211 n n N09 C05 C8U sing 212 n n C14 C13 C8U doub 213 n y C12 C13 C8U sing 214 n y C12 C04 C8U sing 215 n n C05 C04 C8U sing 216 n n C05 C06 C8U doub 217 n n C08 C06 C8U sing 218 n n C04 C03 C8U sing 219 n n C06 N07 C8U sing 220 n n C03 C22 C8U sing 221 n n C03 C02 C8U doub 222 n n N07 C02 C8U sing 223 n n O24 C25 C8U sing 224 n n O24 C22 C8U sing 225 n n C22 O23 C8U doub 226 n n C02 C01 C8U sing 227 n n C13 H1 C8U sing 228 n n C15 H2 C8U sing 229 n n C01 H3 C8U sing 230 n n C01 H4 C8U sing 231 n n C01 H5 C8U sing 232 n n C04 H6 C8U sing 233 n n N07 H9 C8U sing 234 n n C08 H10 C8U sing 235 n n C08 H11 C8U sing 236 n n C08 H12 C8U sing 237 n n C14 H13 C8U sing 238 n n C16 H14 C8U sing 239 n n C25 H15 C8U sing 240 n n C25 H16 C8U sing 241 n n C25 H17 C8U sing 242 n n # _atom_sites.entry_id 7JPK _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code D 4 CA A 1 1901 1902 CA CA . E 5 3PE A 1 1902 1904 3PE 3PE . F 5 3PE A 1 1903 1905 3PE 3PE . G 5 3PE A 1 1904 1906 3PE 3PE . H 5 3PE A 1 1905 1907 3PE 3PE . I 5 3PE A 1 1906 1908 3PE 3PE . J 5 3PE A 1 1907 1909 3PE 3PE . K 6 PC1 A 1 1908 1910 PC1 PC1 . L 5 3PE A 1 1909 1911 3PE 3PE . M 5 3PE A 1 1910 1912 3PE 3PE . N 7 C8U A 1 1911 2001 C8U LIG . O 5 3PE E 1 301 1903 3PE 3PE . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C13 C8U . . . N 7 145.406 171.082 154.115 1 20 ? C13 C8U 1911 A 1 HETATM 2 C C15 C8U . . . N 7 143.652 171.426 152.528 1 20 ? C15 C8U 1911 A 1 HETATM 3 C C17 C8U . . . N 7 145.49 172.961 152.631 1 20 ? C17 C8U 1911 A 1 HETATM 4 C C22 C8U . . . N 7 146.861 174.185 156.394 1 20 ? C22 C8U 1911 A 1 HETATM 5 C C01 C8U . . . N 7 147.063 171.777 158.207 1 20 ? C01 C8U 1911 A 1 HETATM 6 C C02 C8U . . . N 7 147.281 171.603 156.708 1 20 ? C02 C8U 1911 A 1 HETATM 7 C C03 C8U . . . N 7 147.149 172.806 155.798 1 20 ? C03 C8U 1911 A 1 HETATM 8 C C04 C8U . . . N 7 147.38 172.643 154.298 1 20 ? C04 C8U 1911 A 1 HETATM 9 C C05 C8U . . . N 7 148.428 171.563 153.994 1 20 ? C05 C8U 1911 A 1 HETATM 10 C C06 C8U . . . N 7 148.549 170.358 154.929 1 20 ? C06 C8U 1911 A 1 HETATM 11 N N07 C8U . . . N 7 147.877 170.385 156.214 1 20 ? N07 C8U 1911 A 1 HETATM 12 C C08 C8U . . . N 7 149.121 169.05 154.396 1 20 ? C08 C8U 1911 A 1 HETATM 13 N N09 C8U . . . N 7 149.163 171.582 152.746 1 20 1 N09 C8U 1911 A 1 HETATM 14 O O10 C8U . . . N 7 149.291 170.409 151.993 1 20 -1 O10 C8U 1911 A 1 HETATM 15 O O11 C8U . . . N 7 149.652 172.58 152.368 1 20 ? O11 C8U 1911 A 1 HETATM 16 C C12 C8U . . . N 7 146.049 172.217 153.656 1 20 ? C12 C8U 1911 A 1 HETATM 17 C C14 C8U . . . N 7 144.208 170.685 153.553 1 20 ? C14 C8U 1911 A 1 HETATM 18 C C16 C8U . . . N 7 144.292 172.562 152.068 1 20 ? C16 C8U 1911 A 1 HETATM 19 C C18 C8U . . . N 7 146.183 174.215 152.11 1 20 ? C18 C8U 1911 A 1 HETATM 20 F F19 C8U . . . N 7 147.192 173.859 151.269 1 20 ? F19 C8U 1911 A 1 HETATM 21 F F20 C8U . . . N 7 145.283 174.976 151.433 1 20 ? F20 C8U 1911 A 1 HETATM 22 F F21 C8U . . . N 7 146.686 174.939 153.146 1 20 ? F21 C8U 1911 A 1 HETATM 23 O O23 C8U . . . N 7 147.086 174.396 157.534 1 20 ? O23 C8U 1911 A 1 HETATM 24 O O24 C8U . . . N 7 146.331 175.204 155.596 1 20 ? O24 C8U 1911 A 1 HETATM 25 C C25 C8U . . . N 7 147.214 176.27 155.39 1 20 ? C25 C8U 1911 A 1 # _model_server_stats.io_time_ms 24 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 24 _model_server_stats.query_time_ms 335 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 25 #