data_7JPO # _model_server_result.job_id yZT83akCJZ5SM24xWCJVTg _model_server_result.datetime_utc '2024-10-19 09:43:02' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7jpo # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":901}' # _entry.id 7JPO # _exptl.entry_id 7JPO _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 507.181 _entity.id 6 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description "ADENOSINE-5'-TRIPHOSPHATE" _entity.pdbx_number_of_molecules 3 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 7JPO _cell.length_a 1 _cell.length_b 1 _cell.length_c 1 _cell.Z_PDB ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 7JPO _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details pentameric _pdbx_struct_assembly.oligomeric_count 5 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 6 F N N ? 6 I N N ? 6 K N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OG1 THR 72 A THR 541 1_555 G MG MG . A MG 902 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.123 ? metalc ? metalc2 F O3G ATP . A ATP 901 1_555 G MG MG . A MG 902 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.261 ? metalc ? metalc3 F O1B ATP . A ATP 901 1_555 G MG MG . A MG 902 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.091 ? metalc ? metalc4 B O SER 413 B SER 413 1_555 H K K . B K 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.949 ? metalc ? metalc5 B O LEU 415 B LEU 415 1_555 H K K . B K 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.01 ? metalc ? metalc6 B O ILE 418 B ILE 418 1_555 H K K . B K 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.929 ? metalc ? metalc7 D OG1 THR 74 D THR 74 1_555 J MG MG . D MG 902 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.954 ? metalc ? metalc8 I O1G ATP . D ATP 901 1_555 J MG MG . D MG 902 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.871 ? metalc ? metalc9 I O3G ATP . D ATP 901 1_555 J MG MG . D MG 902 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.503 ? metalc ? metalc10 I O3B ATP . D ATP 901 1_555 J MG MG . D MG 902 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.124 ? metalc ? metalc11 E OG1 THR 44 E THR 44 1_555 L MG MG . E MG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.073 ? metalc ? metalc12 K O3G ATP . E ATP 501 1_555 L MG MG . E MG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.09 ? metalc ? metalc13 K O1B ATP . E ATP 501 1_555 L MG MG . E MG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.274 ? # _chem_comp.formula 'C10 H16 N5 O13 P3' _chem_comp.formula_weight 507.181 _chem_comp.id ATP _chem_comp.mon_nstd_flag . _chem_comp.name "ADENOSINE-5'-TRIPHOSPHATE" _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PG O1G ATP doub 70 n n PG O2G ATP sing 71 n n PG O3G ATP sing 72 n n PG O3B ATP sing 73 n n O2G HOG2 ATP sing 74 n n O3G HOG3 ATP sing 75 n n PB O1B ATP doub 76 n n PB O2B ATP sing 77 n n PB O3B ATP sing 78 n n PB O3A ATP sing 79 n n O2B HOB2 ATP sing 80 n n PA O1A ATP doub 81 n n PA O2A ATP sing 82 n n PA O3A ATP sing 83 n n PA O5' ATP sing 84 n n O2A HOA2 ATP sing 85 n n O5' C5' ATP sing 86 n n C5' C4' ATP sing 87 n n C5' "H5'1" ATP sing 88 n n C5' "H5'2" ATP sing 89 n n C4' O4' ATP sing 90 n n C4' C3' ATP sing 91 n n C4' H4' ATP sing 92 n n O4' C1' ATP sing 93 n n C3' O3' ATP sing 94 n n C3' C2' ATP sing 95 n n C3' H3' ATP sing 96 n n O3' HO3' ATP sing 97 n n C2' O2' ATP sing 98 n n C2' C1' ATP sing 99 n n C2' H2' ATP sing 100 n n O2' HO2' ATP sing 101 n n C1' N9 ATP sing 102 n n C1' H1' ATP sing 103 n n N9 C8 ATP sing 104 n y N9 C4 ATP sing 105 n y C8 N7 ATP doub 106 n y C8 H8 ATP sing 107 n n N7 C5 ATP sing 108 n y C5 C6 ATP sing 109 n y C5 C4 ATP doub 110 n y C6 N6 ATP sing 111 n n C6 N1 ATP doub 112 n y N6 HN61 ATP sing 113 n n N6 HN62 ATP sing 114 n n N1 C2 ATP sing 115 n y C2 N3 ATP doub 116 n y C2 H2 ATP sing 117 n n N3 C4 ATP sing 118 n y # _atom_sites.entry_id 7JPO _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code F 6 ATP A 1 901 901 ATP ATP . G 7 MG A 1 902 902 MG MG . H 8 K B 1 601 578 K K . I 6 ATP D 1 901 901 ATP ATP . J 7 MG D 1 902 902 MG MG . K 6 ATP E 1 501 501 ATP ATP . L 7 MG E 1 502 502 MG MG . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PG ATP . . . F 6 165.305 196.846 135.538 1 44.83 ? PG ATP 901 A 1 HETATM 2 O O1G ATP . . . F 6 164.001 197.493 135.912 1 44.83 ? O1G ATP 901 A 1 HETATM 3 O O2G ATP . . . F 6 165.31 195.352 135.693 1 44.83 -1 O2G ATP 901 A 1 HETATM 4 O O3G ATP . . . F 6 166.536 197.54 136.063 1 44.83 ? O3G ATP 901 A 1 HETATM 5 P PB ATP . . . F 6 165.168 198.475 133.268 1 44.83 ? PB ATP 901 A 1 HETATM 6 O O1B ATP . . . F 6 166.011 199.472 134.007 1 44.83 -1 O1B ATP 901 A 1 HETATM 7 O O2B ATP . . . F 6 163.687 198.704 133.145 1 44.83 ? O2B ATP 901 A 1 HETATM 8 O O3B ATP . . . F 6 165.392 197.043 133.953 1 44.83 ? O3B ATP 901 A 1 HETATM 9 P PA ATP . . . F 6 165.288 198.843 130.47 1 44.83 ? PA ATP 901 A 1 HETATM 10 O O1A ATP . . . F 6 165.698 200.288 130.405 1 44.83 -1 O1A ATP 901 A 1 HETATM 11 O O2A ATP . . . F 6 163.857 198.393 130.345 1 44.83 ? O2A ATP 901 A 1 HETATM 12 O O3A ATP . . . F 6 165.847 198.214 131.833 1 44.83 ? O3A ATP 901 A 1 HETATM 13 O O5' ATP . . . F 6 166.057 198.034 129.317 1 44.83 ? O5' ATP 901 A 1 HETATM 14 C C5' ATP . . . F 6 165.24 197.204 128.492 1 44.83 ? C5' ATP 901 A 1 HETATM 15 C C4' ATP . . . F 6 165.786 197.046 127.086 1 44.83 ? C4' ATP 901 A 1 HETATM 16 O O4' ATP . . . F 6 164.669 196.926 126.21 1 44.83 ? O4' ATP 901 A 1 HETATM 17 C C3' ATP . . . F 6 166.579 198.259 126.653 1 44.83 ? C3' ATP 901 A 1 HETATM 18 O O3' ATP . . . F 6 167.939 197.89 126.429 1 44.83 ? O3' ATP 901 A 1 HETATM 19 C C2' ATP . . . F 6 165.965 198.71 125.352 1 44.83 ? C2' ATP 901 A 1 HETATM 20 O O2' ATP . . . F 6 166.865 198.408 124.286 1 44.83 ? O2' ATP 901 A 1 HETATM 21 C C1' ATP . . . F 6 164.687 197.916 125.186 1 44.83 ? C1' ATP 901 A 1 HETATM 22 N N9 ATP . . . F 6 163.545 198.831 125.415 1 44.83 ? N9 ATP 901 A 1 HETATM 23 C C8 ATP . . . F 6 162.756 198.829 126.501 1 44.83 ? C8 ATP 901 A 1 HETATM 24 N N7 ATP . . . F 6 161.803 199.786 126.419 1 44.83 ? N7 ATP 901 A 1 HETATM 25 C C5 ATP . . . F 6 161.98 200.424 125.255 1 44.83 ? C5 ATP 901 A 1 HETATM 26 C C6 ATP . . . F 6 161.32 201.538 124.546 1 44.83 ? C6 ATP 901 A 1 HETATM 27 N N6 ATP . . . F 6 160.254 202.171 125.089 1 44.83 ? N6 ATP 901 A 1 HETATM 28 N N1 ATP . . . F 6 161.815 201.902 123.345 1 44.83 ? N1 ATP 901 A 1 HETATM 29 C C2 ATP . . . F 6 162.871 201.279 122.799 1 44.83 ? C2 ATP 901 A 1 HETATM 30 N N3 ATP . . . F 6 163.517 200.26 123.389 1 44.83 ? N3 ATP 901 A 1 HETATM 31 C C4 ATP . . . F 6 163.126 199.793 124.595 1 44.83 ? C4 ATP 901 A 1 # _model_server_stats.io_time_ms 13 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 44 _model_server_stats.query_time_ms 328 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 31 #