data_7JPV # _model_server_result.job_id QoQeEnjqpP0j_jrE6Mz3Uw _model_server_result.datetime_utc '2024-11-21 14:33:23' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7jpv # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"N","auth_seq_id":301}' # _entry.id 7JPV # _exptl.entry_id 7JPV _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 790.145 _entity.id 6 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 1,2-DIACYL-SN-GLYCERO-3-PHOSPHOCHOLINE _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 7JPV _cell.length_a 1 _cell.length_b 1 _cell.length_c 1 _cell.Z_PDB ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 7JPV _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details trimeric _pdbx_struct_assembly.oligomeric_count 3 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 6 _struct_asym.id N _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 226 A CYS 226 1_555 A SG CYS 254 A CYS 254 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? disulf ? disulf2 A SG CYS 245 A CYS 245 1_555 A SG CYS 261 A CYS 261 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? disulf ? disulf3 A SG CYS 957 A CYS 957 1_555 A SG CYS 968 A CYS 968 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.029 ? disulf ? disulf4 A SG CYS 1338 A CYS 1338 1_555 A SG CYS 1352 A CYS 1352 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.026 ? disulf ? disulf5 C SG CYS 305 F CYS 305 1_555 C SG CYS 1046 F CYS 1047 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.039 ? disulf ? disulf6 C SG CYS 356 F CYS 356 1_555 C SG CYS 1061 F CYS 1062 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.025 ? disulf ? disulf7 C SG CYS 406 F CYS 406 1_555 C SG CYS 1073 F CYS 1074 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? disulf ? disulf8 C SG CYS 669 F CYS 670 1_555 C SG CYS 699 F CYS 700 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? disulf ? disulf9 C SG CYS 843 F CYS 844 1_555 C SG CYS 852 F CYS 853 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.035 ? disulf ? disulf10 C SG CYS 906 F CYS 907 1_555 C SG CYS 976 F CYS 977 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.027 ? disulf ? disulf11 C SG CYS 998 F CYS 999 1_555 C SG CYS 1028 F CYS 1029 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? disulf ? disulf12 C SG CYS 1001 F CYS 1002 1_555 C SG CYS 1026 F CYS 1027 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.028 ? metalc ? metalc1 A OE1 GLU 292 A GLU 292 1_555 D CA CA . A CA 1901 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.553 ? metalc ? metalc2 A OE2 GLU 292 A GLU 292 1_555 D CA CA . A CA 1901 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.618 ? metalc ? metalc3 A OE1 GLU 614 A GLU 614 1_555 D CA CA . A CA 1901 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.191 ? metalc ? metalc4 A OE1 GLU 1014 A GLU 1014 1_555 D CA CA . A CA 1901 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.697 ? metalc ? metalc5 A OE2 GLU 1014 A GLU 1014 1_555 D CA CA . A CA 1901 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.437 ? # _chem_comp.formula 'C44 H88 N O8 P' _chem_comp.formula_weight 790.145 _chem_comp.id PC1 _chem_comp.mon_nstd_flag . _chem_comp.name 1,2-DIACYL-SN-GLYCERO-3-PHOSPHOCHOLINE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 3-SN-PHOSPHATIDYLCHOLINE # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag O12 P PC1 sing 367 n n P O14 PC1 doub 368 n n P O13 PC1 sing 369 n n P O11 PC1 sing 370 n n O13 C11 PC1 sing 371 n n C11 C12 PC1 sing 372 n n C11 H111 PC1 sing 373 n n C11 H112 PC1 sing 374 n n C12 N PC1 sing 375 n n C12 H121 PC1 sing 376 n n C12 H122 PC1 sing 377 n n N C13 PC1 sing 378 n n N C14 PC1 sing 379 n n N C15 PC1 sing 380 n n C13 H131 PC1 sing 381 n n C13 H132 PC1 sing 382 n n C13 H133 PC1 sing 383 n n C14 H141 PC1 sing 384 n n C14 H142 PC1 sing 385 n n C14 H143 PC1 sing 386 n n C15 H151 PC1 sing 387 n n C15 H152 PC1 sing 388 n n C15 H153 PC1 sing 389 n n O11 C1 PC1 sing 390 n n C1 C2 PC1 sing 391 n n C1 H11 PC1 sing 392 n n C1 H12 PC1 sing 393 n n C2 O21 PC1 sing 394 n n C2 C3 PC1 sing 395 n n C2 H2 PC1 sing 396 n n O21 C21 PC1 sing 397 n n C21 O22 PC1 doub 398 n n C21 C22 PC1 sing 399 n n C22 C23 PC1 sing 400 n n C22 H221 PC1 sing 401 n n C22 H222 PC1 sing 402 n n C23 C24 PC1 sing 403 n n C23 H231 PC1 sing 404 n n C23 H232 PC1 sing 405 n n C24 C25 PC1 sing 406 n n C24 H241 PC1 sing 407 n n C24 H242 PC1 sing 408 n n C25 C26 PC1 sing 409 n n C25 H251 PC1 sing 410 n n C25 H252 PC1 sing 411 n n C26 C27 PC1 sing 412 n n C26 H261 PC1 sing 413 n n C26 H262 PC1 sing 414 n n C27 C28 PC1 sing 415 n n C27 H271 PC1 sing 416 n n C27 H272 PC1 sing 417 n n C28 C29 PC1 sing 418 n n C28 H281 PC1 sing 419 n n C28 H282 PC1 sing 420 n n C29 C2A PC1 sing 421 n n C29 H291 PC1 sing 422 n n C29 H292 PC1 sing 423 n n C2A C2B PC1 sing 424 n n C2A H2A1 PC1 sing 425 n n C2A H2A2 PC1 sing 426 n n C2B C2C PC1 sing 427 n n C2B H2B1 PC1 sing 428 n n C2B H2B2 PC1 sing 429 n n C2C C2D PC1 sing 430 n n C2C H2C1 PC1 sing 431 n n C2C H2C2 PC1 sing 432 n n C2D C2E PC1 sing 433 n n C2D H2D1 PC1 sing 434 n n C2D H2D2 PC1 sing 435 n n C2E C2F PC1 sing 436 n n C2E H2E1 PC1 sing 437 n n C2E H2E2 PC1 sing 438 n n C2F C2G PC1 sing 439 n n C2F H2F1 PC1 sing 440 n n C2F H2F2 PC1 sing 441 n n C2G C2H PC1 sing 442 n n C2G H2G1 PC1 sing 443 n n C2G H2G2 PC1 sing 444 n n C2H C2I PC1 sing 445 n n C2H H2H1 PC1 sing 446 n n C2H H2H2 PC1 sing 447 n n C2I H2I1 PC1 sing 448 n n C2I H2I2 PC1 sing 449 n n C2I H2I3 PC1 sing 450 n n C3 O31 PC1 sing 451 n n C3 H31 PC1 sing 452 n n C3 H32 PC1 sing 453 n n O31 C31 PC1 sing 454 n n C31 O32 PC1 doub 455 n n C31 C32 PC1 sing 456 n n C32 C33 PC1 sing 457 n n C32 H321 PC1 sing 458 n n C32 H322 PC1 sing 459 n n C33 C34 PC1 sing 460 n n C33 H331 PC1 sing 461 n n C33 H332 PC1 sing 462 n n C34 C35 PC1 sing 463 n n C34 H341 PC1 sing 464 n n C34 H342 PC1 sing 465 n n C35 C36 PC1 sing 466 n n C35 H351 PC1 sing 467 n n C35 H352 PC1 sing 468 n n C36 C37 PC1 sing 469 n n C36 H361 PC1 sing 470 n n C36 H362 PC1 sing 471 n n C37 C38 PC1 sing 472 n n C37 H371 PC1 sing 473 n n C37 H372 PC1 sing 474 n n C38 C39 PC1 sing 475 n n C38 H381 PC1 sing 476 n n C38 H382 PC1 sing 477 n n C39 C3A PC1 sing 478 n n C39 H391 PC1 sing 479 n n C39 H392 PC1 sing 480 n n C3A C3B PC1 sing 481 n n C3A H3A1 PC1 sing 482 n n C3A H3A2 PC1 sing 483 n n C3B C3C PC1 sing 484 n n C3B H3B1 PC1 sing 485 n n C3B H3B2 PC1 sing 486 n n C3C C3D PC1 sing 487 n n C3C H3C1 PC1 sing 488 n n C3C H3C2 PC1 sing 489 n n C3D C3E PC1 sing 490 n n C3D H3D1 PC1 sing 491 n n C3D H3D2 PC1 sing 492 n n C3E C3F PC1 sing 493 n n C3E H3E1 PC1 sing 494 n n C3E H3E2 PC1 sing 495 n n C3F C3G PC1 sing 496 n n C3F H3F1 PC1 sing 497 n n C3F H3F2 PC1 sing 498 n n C3G C3H PC1 sing 499 n n C3G H3G1 PC1 sing 500 n n C3G H3G2 PC1 sing 501 n n C3H C3I PC1 sing 502 n n C3H H3H1 PC1 sing 503 n n C3H H3H2 PC1 sing 504 n n C3I H3I1 PC1 sing 505 n n C3I H3I2 PC1 sing 506 n n C3I H3I3 PC1 sing 507 n n # _atom_sites.entry_id 7JPV _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code D 4 CA A 1 1901 1902 CA CA . E 5 3PE A 1 1902 1903 3PE 3PE . F 5 3PE A 1 1903 1904 3PE 3PE . G 5 3PE A 1 1904 1905 3PE 3PE . H 5 3PE A 1 1905 1906 3PE 3PE . I 5 3PE A 1 1906 1907 3PE 3PE . J 5 3PE A 1 1907 1908 3PE 3PE . K 5 3PE A 1 1908 1909 3PE 3PE . L 5 3PE A 1 1909 1911 3PE 3PE . M 5 3PE A 1 1910 1912 3PE 3PE . N 6 PC1 E 1 301 1910 PC1 PC1 . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 O O12 PC1 . . . N 6 178.203 147.16 141.526 1 20 ? O12 PC1 301 E 1 HETATM 2 P P PC1 . . . N 6 177.965 145.768 140.995 1 20 ? P PC1 301 E 1 HETATM 3 O O14 PC1 . . . N 6 178.771 145.266 139.824 1 20 ? O14 PC1 301 E 1 HETATM 4 O O13 PC1 . . . N 6 178.142 144.734 142.214 1 20 ? O13 PC1 301 E 1 HETATM 5 C C11 PC1 . . . N 6 179.325 144.752 143.009 1 20 ? C11 PC1 301 E 1 HETATM 6 C C12 PC1 . . . N 6 180.522 145.122 142.139 1 20 ? C12 PC1 301 E 1 HETATM 7 N N PC1 . . . N 6 181.774 144.869 142.868 1 20 ? N PC1 301 E 1 HETATM 8 C C13 PC1 . . . N 6 182.158 143.46 142.715 1 20 ? C13 PC1 301 E 1 HETATM 9 C C14 PC1 . . . N 6 182.838 145.722 142.322 1 20 ? C14 PC1 301 E 1 HETATM 10 C C15 PC1 . . . N 6 181.592 145.173 144.293 1 20 ? C15 PC1 301 E 1 HETATM 11 O O11 PC1 . . . N 6 176.404 145.617 140.634 1 20 ? O11 PC1 301 E 1 HETATM 12 C C1 PC1 . . . N 6 175.404 146.063 141.547 1 20 ? C1 PC1 301 E 1 HETATM 13 C C2 PC1 . . . N 6 174.321 146.831 140.796 1 20 ? C2 PC1 301 E 1 HETATM 14 O O21 PC1 . . . N 6 174.888 148.003 140.212 1 20 ? O21 PC1 301 E 1 HETATM 15 C C21 PC1 . . . N 6 175.216 147.82 138.806 1 20 ? C21 PC1 301 E 1 HETATM 16 O O22 PC1 . . . N 6 174.637 146.962 138.161 1 20 ? O22 PC1 301 E 1 HETATM 17 C C22 PC1 . . . N 6 176.263 148.69 138.154 1 20 ? C22 PC1 301 E 1 HETATM 18 C C23 PC1 . . . N 6 175.671 149.332 136.906 1 20 ? C23 PC1 301 E 1 HETATM 19 C C24 PC1 . . . N 6 175.315 150.793 137.152 1 20 ? C24 PC1 301 E 1 HETATM 20 C C25 PC1 . . . N 6 174.218 151.248 136.197 1 20 ? C25 PC1 301 E 1 HETATM 21 C C26 PC1 . . . N 6 173.496 150.05 135.593 1 20 ? C26 PC1 301 E 1 HETATM 22 C C27 PC1 . . . N 6 171.99 150.272 135.574 1 20 ? C27 PC1 301 E 1 HETATM 23 C C28 PC1 . . . N 6 171.532 150.808 134.223 1 20 ? C28 PC1 301 E 1 HETATM 24 C C29 PC1 . . . N 6 170.025 150.651 134.057 1 20 ? C29 PC1 301 E 1 HETATM 25 C C2A PC1 . . . N 6 169.53 151.37 132.808 1 20 ? C2A PC1 301 E 1 HETATM 26 C C2B PC1 . . . N 6 168.291 152.204 133.111 1 20 ? C2B PC1 301 E 1 HETATM 27 C C2C PC1 . . . N 6 167.141 151.837 132.18 1 20 ? C2C PC1 301 E 1 HETATM 28 C C2D PC1 . . . N 6 166.3 153.062 131.839 1 20 ? C2D PC1 301 E 1 HETATM 29 C C2E PC1 . . . N 6 164.883 152.932 132.388 1 20 ? C2E PC1 301 E 1 HETATM 30 C C2F PC1 . . . N 6 163.872 152.77 131.259 1 20 ? C2F PC1 301 E 1 HETATM 31 C C2G PC1 . . . N 6 162.825 153.877 131.292 1 20 ? C2G PC1 301 E 1 HETATM 32 C C2H PC1 . . . N 6 161.797 153.626 132.389 1 20 ? C2H PC1 301 E 1 HETATM 33 C C2I PC1 . . . N 6 161.306 154.929 132.978 1 20 ? C2I PC1 301 E 1 HETATM 34 C C3 PC1 . . . N 6 173.209 147.205 141.772 1 20 ? C3 PC1 301 E 1 HETATM 35 O O31 PC1 . . . N 6 172.559 148.412 141.379 1 20 ? O31 PC1 301 E 1 HETATM 36 C C31 PC1 . . . N 6 172.003 148.548 140.044 1 20 ? C31 PC1 301 E 1 HETATM 37 O O32 PC1 . . . N 6 172.462 147.878 139.136 1 20 ? O32 PC1 301 E 1 HETATM 38 C C32 PC1 . . . N 6 170.868 149.507 139.784 1 20 ? C32 PC1 301 E 1 HETATM 39 C C33 PC1 . . . N 6 170.399 149.352 138.343 1 20 ? C33 PC1 301 E 1 HETATM 40 C C34 PC1 . . . N 6 168.89 149.159 138.287 1 20 ? C34 PC1 301 E 1 HETATM 41 C C35 PC1 . . . N 6 168.361 149.375 136.877 1 20 ? C35 PC1 301 E 1 HETATM 42 C C36 PC1 . . . N 6 167.227 150.39 136.876 1 20 ? C36 PC1 301 E 1 HETATM 43 C C37 PC1 . . . N 6 165.876 149.696 136.785 1 20 ? C37 PC1 301 E 1 HETATM 44 C C38 PC1 . . . N 6 165.426 149.57 135.337 1 20 ? C38 PC1 301 E 1 HETATM 45 C C39 PC1 . . . N 6 164.153 150.368 135.082 1 20 ? C39 PC1 301 E 1 HETATM 46 C C3A PC1 . . . N 6 162.934 149.455 135.056 1 20 ? C3A PC1 301 E 1 HETATM 47 C C3B PC1 . . . N 6 162.308 149.402 133.667 1 20 ? C3B PC1 301 E 1 HETATM 48 C C3C PC1 . . . N 6 161.486 150.655 133.392 1 20 ? C3C PC1 301 E 1 HETATM 49 C C3D PC1 . . . N 6 160.28 150.338 132.518 1 20 ? C3D PC1 301 E 1 HETATM 50 C C3E PC1 . . . N 6 159.47 149.191 133.108 1 20 ? C3E PC1 301 E 1 HETATM 51 C C3F PC1 . . . N 6 158.068 149.649 133.487 1 20 ? C3F PC1 301 E 1 HETATM 52 C C3G PC1 . . . N 6 157.065 149.308 132.392 1 20 ? C3G PC1 301 E 1 HETATM 53 C C3H PC1 . . . N 6 156.746 147.817 132.384 1 20 ? C3H PC1 301 E 1 HETATM 54 C C3I PC1 . . . N 6 155.807 147.467 131.251 1 20 ? C3I PC1 301 E 1 # _model_server_stats.io_time_ms 13 _model_server_stats.parse_time_ms 12 _model_server_stats.create_model_time_ms 20 _model_server_stats.query_time_ms 340 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 54 #