data_7JPW # _model_server_result.job_id '_FVJTHAxp0ZrPEaAplkvog' _model_server_result.datetime_utc '2025-07-14 15:12:39' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7jpw # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"O","auth_seq_id":1912}' # _entry.id 7JPW # _exptl.entry_id 7JPW _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 357.304 _entity.id 7 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'methyl (4~{R})-2,6-dimethyl-5-nitro-4-[2-(trifluoromethyl)phenyl]-1,4-dihydropyridine-3-carboxylate' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 7JPW _cell.length_a 1 _cell.length_b 1 _cell.length_c 1 _cell.Z_PDB ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 7JPW _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details trimeric _pdbx_struct_assembly.oligomeric_count 3 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 7 _struct_asym.id O _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 226 A CYS 226 1_555 A SG CYS 254 A CYS 254 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? disulf ? disulf2 A SG CYS 245 A CYS 245 1_555 A SG CYS 261 A CYS 261 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? disulf ? disulf3 A SG CYS 957 A CYS 957 1_555 A SG CYS 968 A CYS 968 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.023 ? disulf ? disulf4 A SG CYS 1338 A CYS 1338 1_555 A SG CYS 1352 A CYS 1352 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? disulf ? disulf5 B SG CYS 57 E CYS 57 1_555 B SG CYS 80 E CYS 80 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? disulf ? disulf6 C SG CYS 305 F CYS 305 1_555 C SG CYS 1046 F CYS 1047 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? disulf ? disulf7 C SG CYS 356 F CYS 356 1_555 C SG CYS 1061 F CYS 1062 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.026 ? disulf ? disulf8 C SG CYS 406 F CYS 406 1_555 C SG CYS 1073 F CYS 1074 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.022 ? disulf ? disulf9 C SG CYS 669 F CYS 670 1_555 C SG CYS 699 F CYS 700 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.029 ? disulf ? disulf10 C SG CYS 843 F CYS 844 1_555 C SG CYS 852 F CYS 853 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.036 ? disulf ? disulf11 C SG CYS 906 F CYS 907 1_555 C SG CYS 976 F CYS 977 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? disulf ? disulf12 C SG CYS 998 F CYS 999 1_555 C SG CYS 1028 F CYS 1029 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.029 ? disulf ? disulf13 C SG CYS 1001 F CYS 1002 1_555 C SG CYS 1026 F CYS 1027 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.027 ? metalc ? metalc1 A OE2 GLU 292 A GLU 292 1_555 D CA CA . A CA 1901 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.364 ? metalc ? metalc2 A OE1 GLU 614 A GLU 614 1_555 D CA CA . A CA 1901 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.808 ? metalc ? metalc3 A OE1 GLU 1014 A GLU 1014 1_555 D CA CA . A CA 1901 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.633 ? metalc ? metalc4 A OE2 GLU 1014 A GLU 1014 1_555 D CA CA . A CA 1901 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.363 ? # _chem_comp.formula 'C16 H16 F3 N2 O4' _chem_comp.formula_weight 357.304 _chem_comp.id VFY _chem_comp.mon_nstd_flag . _chem_comp.name 'methyl (4~{R})-2,6-dimethyl-5-nitro-4-[2-(trifluoromethyl)phenyl]-1,4-dihydropyridine-3-carboxylate' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C04 O03 VFY sing 647 n n O03 C02 VFY sing 648 n n F24 C22 VFY sing 649 n n F25 C22 VFY sing 650 n n C20 C19 VFY doub 651 n y C20 C21 VFY sing 652 n y C22 C21 VFY sing 653 n n C22 F23 VFY sing 654 n n C02 O01 VFY doub 655 n n C02 C05 VFY sing 656 n n C19 C18 VFY sing 657 n y C21 C16 VFY doub 658 n y C18 C17 VFY doub 659 n y C16 C17 VFY sing 660 n y C16 C15 VFY sing 661 n n C05 C15 VFY sing 662 n n C05 C06 VFY doub 663 n n C15 C11 VFY sing 664 n n C07 C06 VFY sing 665 n n C06 N08 VFY sing 666 n n O13 N12 VFY sing 667 n n C11 N12 VFY sing 668 n n C11 C09 VFY doub 669 n n N08 C09 VFY sing 670 n n N12 O14 VFY doub 671 n n C09 C10 VFY sing 672 n n C10 H1 VFY sing 673 n n C10 H2 VFY sing 674 n n C10 H3 VFY sing 675 n n C15 H4 VFY sing 676 n n C17 H5 VFY sing 677 n n C20 H6 VFY sing 678 n n C04 H7 VFY sing 679 n n C04 H8 VFY sing 680 n n C04 H9 VFY sing 681 n n C07 H12 VFY sing 682 n n C07 H13 VFY sing 683 n n C07 H14 VFY sing 684 n n C18 H17 VFY sing 685 n n C19 H18 VFY sing 686 n n N08 H19 VFY sing 687 n n O13 H10 VFY sing 688 n n # _atom_sites.entry_id 7JPW _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code D 4 CA A 1 1901 1902 CA CA . E 5 3PE A 1 1902 1903 3PE 3PE . F 5 3PE A 1 1903 1904 3PE 3PE . G 5 3PE A 1 1904 1905 3PE 3PE . H 5 3PE A 1 1905 1906 3PE 3PE . I 5 3PE A 1 1906 1907 3PE 3PE . J 5 3PE A 1 1907 1908 3PE 3PE . K 5 3PE A 1 1908 1909 3PE 3PE . L 6 PC1 A 1 1909 1910 PC1 PC1 . M 5 3PE A 1 1910 1911 3PE 3PE . N 5 3PE A 1 1911 1912 3PE 3PE . O 7 VFY A 1 1912 2001 VFY LIG . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C10 VFY . . . O 7 147.775 171.289 157.428 1 65.21 ? C10 VFY 1912 A 1 HETATM 2 N N12 VFY . . . O 7 147.247 173.617 155.502 1 65.21 ? N12 VFY 1912 A 1 HETATM 3 C C15 VFY . . . O 7 147.524 172.071 153.483 1 65.21 ? C15 VFY 1912 A 1 HETATM 4 C C17 VFY . . . O 7 145.641 170.373 153.378 1 65.21 ? C17 VFY 1912 A 1 HETATM 5 C C20 VFY . . . O 7 144.168 171.997 151.684 1 65.21 ? C20 VFY 1912 A 1 HETATM 6 C C21 VFY . . . O 7 145.408 172.411 152.138 1 65.21 ? C21 VFY 1912 A 1 HETATM 7 C C22 VFY . . . O 7 145.965 173.766 151.706 1 65.21 ? C22 VFY 1912 A 1 HETATM 8 C C02 VFY . . . O 7 149.539 171.447 151.914 1 65.21 ? C02 VFY 1912 A 1 HETATM 9 C C04 VFY . . . O 7 149.088 172.409 149.831 1 65.21 ? C04 VFY 1912 A 1 HETATM 10 C C05 VFY . . . O 7 148.583 171.05 153.034 1 65.21 ? C05 VFY 1912 A 1 HETATM 11 C C06 VFY . . . O 7 148.975 169.928 154 1 65.21 ? C06 VFY 1912 A 1 HETATM 12 C C07 VFY . . . O 7 148.883 168.477 153.535 1 65.21 ? C07 VFY 1912 A 1 HETATM 13 C C09 VFY . . . O 7 148.069 171.227 155.931 1 65.21 ? C09 VFY 1912 A 1 HETATM 14 C C11 VFY . . . O 7 147.479 172.277 155.001 1 65.21 ? C11 VFY 1912 A 1 HETATM 15 C C16 VFY . . . O 7 146.144 171.6 152.986 1 65.21 ? C16 VFY 1912 A 1 HETATM 16 C C18 VFY . . . O 7 144.4 169.959 152.923 1 65.21 ? C18 VFY 1912 A 1 HETATM 17 C C19 VFY . . . O 7 143.663 170.77 152.077 1 65.21 ? C19 VFY 1912 A 1 HETATM 18 F F23 VFY . . . O 7 145.867 174.647 152.743 1 65.21 ? F23 VFY 1912 A 1 HETATM 19 F F24 VFY . . . O 7 145.249 174.227 150.643 1 65.21 ? F24 VFY 1912 A 1 HETATM 20 F F25 VFY . . . O 7 147.274 173.636 151.345 1 65.21 ? F25 VFY 1912 A 1 HETATM 21 N N08 VFY . . . O 7 148.966 170.219 155.418 1 65.21 ? N08 VFY 1912 A 1 HETATM 22 O O01 VFY . . . O 7 150.58 171.945 152.175 1 65.21 ? O01 VFY 1912 A 1 HETATM 23 O O03 VFY . . . O 7 149.183 171.233 150.581 1 65.21 ? O03 VFY 1912 A 1 HETATM 24 O O13 VFY . . . O 7 147.007 174.661 154.601 1 65.21 ? O13 VFY 1912 A 1 HETATM 25 O O14 VFY . . . O 7 147.262 173.829 156.656 1 65.21 ? O14 VFY 1912 A 1 # _model_server_stats.io_time_ms 14 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 45 _model_server_stats.query_time_ms 317 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 25 #