data_7JPX # _model_server_result.job_id D7KDON042BJYtkZ09G2uxA _model_server_result.datetime_utc '2024-11-04 22:52:18' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7jpx # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":1902}' # _entry.id 7JPX # _exptl.entry_id 7JPX _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 748.065 _entity.id 5 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 1,2-DIACYL-SN-GLYCERO-3-PHOSPHOETHANOLAMINE _entity.pdbx_number_of_molecules 9 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 7JPX _cell.length_a 1 _cell.length_b 1 _cell.length_c 1 _cell.Z_PDB ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 7JPX _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details trimeric _pdbx_struct_assembly.oligomeric_count 3 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 5 E N N ? 5 F N N ? 5 G N N ? 5 H N N ? 5 I N N ? 5 J N N ? 5 K N N ? 5 M N N ? 5 N N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 226 A CYS 226 1_555 A SG CYS 254 A CYS 254 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.017 ? disulf ? disulf2 A SG CYS 245 A CYS 245 1_555 A SG CYS 261 A CYS 261 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.035 ? disulf ? disulf3 A SG CYS 957 A CYS 957 1_555 A SG CYS 968 A CYS 968 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.021 ? disulf ? disulf4 A SG CYS 1338 A CYS 1338 1_555 A SG CYS 1352 A CYS 1352 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? disulf ? disulf5 B SG CYS 57 E CYS 57 1_555 B SG CYS 80 E CYS 80 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.043 ? disulf ? disulf6 C SG CYS 305 F CYS 305 1_555 C SG CYS 1046 F CYS 1047 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? disulf ? disulf7 C SG CYS 356 F CYS 356 1_555 C SG CYS 1061 F CYS 1062 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.026 ? disulf ? disulf8 C SG CYS 406 F CYS 406 1_555 C SG CYS 1073 F CYS 1074 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? disulf ? disulf9 C SG CYS 669 F CYS 670 1_555 C SG CYS 699 F CYS 700 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? disulf ? disulf10 C SG CYS 843 F CYS 844 1_555 C SG CYS 852 F CYS 853 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.027 ? disulf ? disulf11 C SG CYS 906 F CYS 907 1_555 C SG CYS 976 F CYS 977 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? disulf ? disulf12 C SG CYS 998 F CYS 999 1_555 C SG CYS 1028 F CYS 1029 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.028 ? disulf ? disulf13 C SG CYS 1001 F CYS 1002 1_555 C SG CYS 1026 F CYS 1027 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? metalc ? metalc1 A OE1 GLU 292 A GLU 292 1_555 D CA CA . A CA 1901 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.957 ? metalc ? metalc2 A OE1 GLU 614 A GLU 614 1_555 D CA CA . A CA 1901 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.962 ? metalc ? metalc3 A OE1 GLU 1014 A GLU 1014 1_555 D CA CA . A CA 1901 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.838 ? metalc ? metalc4 A OE2 GLU 1014 A GLU 1014 1_555 D CA CA . A CA 1901 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.575 ? # _chem_comp.formula 'C41 H82 N O8 P' _chem_comp.formula_weight 748.065 _chem_comp.id 3PE _chem_comp.mon_nstd_flag . _chem_comp.name 1,2-DIACYL-SN-GLYCERO-3-PHOSPHOETHANOLAMINE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 3-SN-PHOSPHATIDYLETHANOLAMINE # _atom_sites.entry_id 7JPX _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code D 4 CA A 1 1901 1902 CA CA . E 5 3PE A 1 1902 1903 3PE 3PE . F 5 3PE A 1 1903 1904 3PE 3PE . G 5 3PE A 1 1904 1905 3PE 3PE . H 5 3PE A 1 1905 1906 3PE 3PE . I 5 3PE A 1 1906 1907 3PE 3PE . J 5 3PE A 1 1907 1908 3PE 3PE . K 5 3PE A 1 1908 1909 3PE 3PE . L 6 PC1 A 1 1909 1910 PC1 PC1 . M 5 3PE A 1 1910 1911 3PE 3PE . N 5 3PE A 1 1911 1912 3PE 3PE . O 7 POV A 1 1912 1913 POV POV . P 8 6UB A 1 1913 2001 6UB 6UB . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P P 3PE . . . E 5 150.916 154.408 118.498 1 20 ? P 3PE 1902 A 1 HETATM 2 N N 3PE . . . E 5 146.931 157.169 118.246 1 20 ? N 3PE 1902 A 1 HETATM 3 O O11 3PE . . . E 5 152.117 154.617 119.543 1 20 ? O11 3PE 1902 A 1 HETATM 4 O O12 3PE . . . E 5 151.49 154.423 117.105 1 20 -1 O12 3PE 1902 A 1 HETATM 5 O O13 3PE . . . E 5 150.034 155.735 118.716 1 20 ? O13 3PE 1902 A 1 HETATM 6 O O14 3PE . . . E 5 150.108 153.225 118.967 1 20 ? O14 3PE 1902 A 1 HETATM 7 C C11 3PE . . . E 5 149.112 156.171 117.72 1 20 ? C11 3PE 1902 A 1 HETATM 8 C C12 3PE . . . E 5 147.687 155.892 118.181 1 20 ? C12 3PE 1902 A 1 HETATM 9 C C1 3PE . . . E 5 152.134 153.842 120.739 1 20 ? C1 3PE 1902 A 1 HETATM 10 C C2 3PE . . . E 5 153.557 153.63 121.24 1 20 ? C2 3PE 1902 A 1 HETATM 11 C C3 3PE . . . E 5 154.556 153.788 120.102 1 20 ? C3 3PE 1902 A 1 HETATM 12 O O31 3PE . . . E 5 155.302 152.583 119.96 1 20 ? O31 3PE 1902 A 1 HETATM 13 O O32 3PE . . . E 5 157.282 153.661 120.428 1 20 ? O32 3PE 1902 A 1 HETATM 14 C C31 3PE . . . E 5 156.724 152.592 120.254 1 20 ? C31 3PE 1902 A 1 HETATM 15 C C32 3PE . . . E 5 157.493 151.299 120.344 1 20 ? C32 3PE 1902 A 1 HETATM 16 C C33 3PE . . . E 5 158.986 151.601 120.334 1 20 ? C33 3PE 1902 A 1 HETATM 17 C C34 3PE . . . E 5 159.568 151.517 121.738 1 20 ? C34 3PE 1902 A 1 HETATM 18 C C35 3PE . . . E 5 160.978 152.091 121.776 1 20 ? C35 3PE 1902 A 1 HETATM 19 C C36 3PE . . . E 5 161.547 152.242 120.371 1 20 ? C36 3PE 1902 A 1 HETATM 20 C C37 3PE . . . E 5 163.048 152.498 120.413 1 20 ? C37 3PE 1902 A 1 HETATM 21 C C38 3PE . . . E 5 163.615 152.223 121.801 1 20 ? C38 3PE 1902 A 1 HETATM 22 O O21 3PE . . . E 5 153.834 154.589 122.252 1 20 ? O21 3PE 1902 A 1 HETATM 23 O O22 3PE . . . E 5 153.679 154.745 124.552 1 20 ? O22 3PE 1902 A 1 HETATM 24 C C21 3PE . . . E 5 153.707 154.012 123.58 1 20 ? C21 3PE 1902 A 1 HETATM 25 C C22 3PE . . . E 5 153.619 152.521 123.764 1 20 ? C22 3PE 1902 A 1 HETATM 26 C C23 3PE . . . E 5 154.412 152.164 125.013 1 20 ? C23 3PE 1902 A 1 HETATM 27 C C24 3PE . . . E 5 155.697 152.981 125.072 1 20 ? C24 3PE 1902 A 1 HETATM 28 C C25 3PE . . . E 5 156.423 152.765 126.393 1 20 ? C25 3PE 1902 A 1 HETATM 29 C C26 3PE . . . E 5 157.065 151.384 126.446 1 20 ? C26 3PE 1902 A 1 HETATM 30 C C27 3PE . . . E 5 158.533 151.475 126.845 1 20 ? C27 3PE 1902 A 1 HETATM 31 C C28 3PE . . . E 5 159.428 150.867 125.773 1 20 ? C28 3PE 1902 A 1 HETATM 32 C C29 3PE . . . E 5 160.894 151.183 126.045 1 20 ? C29 3PE 1902 A 1 HETATM 33 C C2A 3PE . . . E 5 161.341 150.598 127.379 1 20 ? C2A 3PE 1902 A 1 # _model_server_stats.io_time_ms 12 _model_server_stats.parse_time_ms 19 _model_server_stats.create_model_time_ms 21 _model_server_stats.query_time_ms 259 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 33 #