data_7JPX
#
_model_server_result.job_id            Xg8emQyybDDzFSSTF9_Wvw 
_model_server_result.datetime_utc      '2024-11-04 22:48:11' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          7jpx 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"J","auth_seq_id":1907}' 
#
_entry.id    7JPX 
#
_exptl.entry_id    7JPX 
_exptl.method      'ELECTRON MICROSCOPY' 
#
_entity.details                     ? 
_entity.formula_weight              748.065 
_entity.id                          5 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            1,2-DIACYL-SN-GLYCERO-3-PHOSPHOETHANOLAMINE 
_entity.pdbx_number_of_molecules    9 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            7JPX 
_cell.length_a            1 
_cell.length_b            1 
_cell.length_c            1 
_cell.Z_PDB               ? 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 7JPX 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        1 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    trimeric 
_pdbx_struct_assembly.oligomeric_count      3 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    ? 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 5 E N N 
? 5 F N N 
? 5 G N N 
? 5 H N N 
? 5 I N N 
? 5 J N N 
? 5 K N N 
? 5 M N N 
? 5 N N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 A SG CYS 226 A CYS 226 1_555 A SG CYS 254 A CYS 254 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.017 ? 
disulf ? disulf2 A SG CYS 245 A CYS 245 1_555 A SG CYS 261 A CYS 261 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.035 ? 
disulf ? disulf3 A SG CYS 957 A CYS 957 1_555 A SG CYS 968 A CYS 968 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.021 ? 
disulf ? disulf4 A SG CYS 1338 A CYS 1338 1_555 A SG CYS 1352 A CYS 1352 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? 
disulf ? disulf5 B SG CYS 57 E CYS 57 1_555 B SG CYS 80 E CYS 80 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.043 ? 
disulf ? disulf6 C SG CYS 305 F CYS 305 1_555 C SG CYS 1046 F CYS 1047 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? 
disulf ? disulf7 C SG CYS 356 F CYS 356 1_555 C SG CYS 1061 F CYS 1062 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.026 ? 
disulf ? disulf8 C SG CYS 406 F CYS 406 1_555 C SG CYS 1073 F CYS 1074 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? 
disulf ? disulf9 C SG CYS 669 F CYS 670 1_555 C SG CYS 699 F CYS 700 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? 
disulf ? disulf10 C SG CYS 843 F CYS 844 1_555 C SG CYS 852 F CYS 853 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.027 ? 
disulf ? disulf11 C SG CYS 906 F CYS 907 1_555 C SG CYS 976 F CYS 977 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? 
disulf ? disulf12 C SG CYS 998 F CYS 999 1_555 C SG CYS 1028 F CYS 1029 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.028 ? 
disulf ? disulf13 C SG CYS 1001 F CYS 1002 1_555 C SG CYS 1026 F CYS 1027 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? 
metalc ? metalc1 A OE1 GLU 292 A GLU 292 1_555 D CA CA . A CA 1901 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.957 ? 
metalc ? metalc2 A OE1 GLU 614 A GLU 614 1_555 D CA CA . A CA 1901 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.962 ? 
metalc ? metalc3 A OE1 GLU 1014 A GLU 1014 1_555 D CA CA . A CA 1901 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.838 ? 
metalc ? metalc4 A OE2 GLU 1014 A GLU 1014 1_555 D CA CA . A CA 1901 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.575 ? 
#
_chem_comp.formula           'C41 H82 N O8 P' 
_chem_comp.formula_weight    748.065 
_chem_comp.id                3PE 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              1,2-DIACYL-SN-GLYCERO-3-PHOSPHOETHANOLAMINE 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     3-SN-PHOSPHATIDYLETHANOLAMINE 
#
_atom_sites.entry_id                     7JPX 
_atom_sites.fract_transf_matrix[1][1]    1 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    1 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    1 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
D 4 CA A 1 1901 1902 CA CA . 
E 5 3PE A 1 1902 1903 3PE 3PE . 
F 5 3PE A 1 1903 1904 3PE 3PE . 
G 5 3PE A 1 1904 1905 3PE 3PE . 
H 5 3PE A 1 1905 1906 3PE 3PE . 
I 5 3PE A 1 1906 1907 3PE 3PE . 
J 5 3PE A 1 1907 1908 3PE 3PE . 
K 5 3PE A 1 1908 1909 3PE 3PE . 
L 6 PC1 A 1 1909 1910 PC1 PC1 . 
M 5 3PE A 1 1910 1911 3PE 3PE . 
N 5 3PE A 1 1911 1912 3PE 3PE . 
O 7 POV A 1 1912 1913 POV POV . 
P 8 6UB A 1 1913 2001 6UB 6UB . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 P P 3PE . . . J 5 133.602 147.228 173.881 1 20 ? P 3PE 1907 A 1 
HETATM 2 N N 3PE . . . J 5 138.065 148.128 176.054 1 20 ? N 3PE 1907 A 1 
HETATM 3 O O11 3PE . . . J 5 133.245 146.723 172.401 1 20 ? O11 3PE 1907 A 1 
HETATM 4 O O12 3PE . . . J 5 133.272 148.696 173.965 1 20 -1 O12 3PE 1907 A 1 
HETATM 5 O O13 3PE . . . J 5 135.199 147.069 173.943 1 20 ? O13 3PE 1907 A 1 
HETATM 6 O O14 3PE . . . J 5 132.997 146.261 174.868 1 20 ? O14 3PE 1907 A 1 
HETATM 7 C C11 3PE . . . J 5 135.968 147.932 174.779 1 20 ? C11 3PE 1907 A 1 
HETATM 8 C C12 3PE . . . J 5 137.198 147.191 175.29 1 20 ? C12 3PE 1907 A 1 
HETATM 9 C C1 3PE . . . J 5 131.91 146.831 171.919 1 20 ? C1 3PE 1907 A 1 
HETATM 10 C C2 3PE . . . J 5 131.474 148.287 171.987 1 20 ? C2 3PE 1907 A 1 
HETATM 11 C C3 3PE . . . J 5 132.375 149.113 171.081 1 20 ? C3 3PE 1907 A 1 
HETATM 12 O O31 3PE . . . J 5 132.703 150.348 171.713 1 20 ? O31 3PE 1907 A 1 
HETATM 13 O O32 3PE . . . J 5 133.714 152.395 171.378 1 20 ? O32 3PE 1907 A 1 
HETATM 14 C C31 3PE . . . J 5 133.07 151.485 170.888 1 20 ? C31 3PE 1907 A 1 
HETATM 15 C C32 3PE . . . J 5 132.651 151.525 169.439 1 20 ? C32 3PE 1907 A 1 
HETATM 16 C C33 3PE . . . J 5 133.157 152.806 168.792 1 20 ? C33 3PE 1907 A 1 
HETATM 17 C C34 3PE . . . J 5 132.401 153.093 167.502 1 20 ? C34 3PE 1907 A 1 
HETATM 18 C C35 3PE . . . J 5 133.274 153.843 166.503 1 20 ? C35 3PE 1907 A 1 
HETATM 19 C C36 3PE . . . J 5 133.604 155.246 166.998 1 20 ? C36 3PE 1907 A 1 
HETATM 20 C C37 3PE . . . J 5 133.051 156.305 166.051 1 20 ? C37 3PE 1907 A 1 
HETATM 21 C C38 3PE . . . J 5 133.595 157.688 166.391 1 20 ? C38 3PE 1907 A 1 
HETATM 22 C C39 3PE . . . J 5 133.639 158.577 165.154 1 20 ? C39 3PE 1907 A 1 
HETATM 23 C C3A 3PE . . . J 5 135.023 159.188 164.971 1 20 ? C3A 3PE 1907 A 1 
HETATM 24 C C3B 3PE . . . J 5 134.94 160.519 164.234 1 20 ? C3B 3PE 1907 A 1 
HETATM 25 O O21 3PE . . . J 5 130.125 148.391 171.542 1 20 ? O21 3PE 1907 A 1 
HETATM 26 O O22 3PE . . . J 5 130.56 147.405 169.505 1 20 ? O22 3PE 1907 A 1 
HETATM 27 C C21 3PE . . . J 5 130.035 148.333 170.093 1 20 ? C21 3PE 1907 A 1 
HETATM 28 C C22 3PE . . . J 5 129.299 149.412 169.337 1 20 ? C22 3PE 1907 A 1 
HETATM 29 C C23 3PE . . . J 5 129.595 149.287 167.847 1 20 ? C23 3PE 1907 A 1 
HETATM 30 C C24 3PE . . . J 5 128.635 148.313 167.177 1 20 ? C24 3PE 1907 A 1 
HETATM 31 C C25 3PE . . . J 5 129.297 147.643 165.981 1 20 ? C25 3PE 1907 A 1 
HETATM 32 C C26 3PE . . . J 5 128.259 146.977 165.088 1 20 ? C26 3PE 1907 A 1 
HETATM 33 C C27 3PE . . . J 5 128.065 147.776 163.808 1 20 ? C27 3PE 1907 A 1 
HETATM 34 C C28 3PE . . . J 5 126.946 147.194 162.953 1 20 ? C28 3PE 1907 A 1 
HETATM 35 C C29 3PE . . . J 5 126.869 147.916 161.614 1 20 ? C29 3PE 1907 A 1 
HETATM 36 C C2A 3PE . . . J 5 127.561 149.272 161.691 1 20 ? C2A 3PE 1907 A 1 
HETATM 37 C C2B 3PE . . . J 5 126.698 150.28 162.44 1 20 ? C2B 3PE 1907 A 1 
HETATM 38 C C2C 3PE . . . J 5 127.214 150.502 163.857 1 20 ? C2C 3PE 1907 A 1 
#
_model_server_stats.io_time_ms              13 
_model_server_stats.parse_time_ms           10 
_model_server_stats.create_model_time_ms    22 
_model_server_stats.query_time_ms           308 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           38 
#