data_7JPX # _model_server_result.job_id MKA5WQDKNVGTCq2NWoyO-Q _model_server_result.datetime_utc '2024-11-04 22:46:59' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7jpx # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"L","auth_seq_id":1909}' # _entry.id 7JPX # _exptl.entry_id 7JPX _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 790.145 _entity.id 6 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 1,2-DIACYL-SN-GLYCERO-3-PHOSPHOCHOLINE _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 7JPX _cell.length_a 1 _cell.length_b 1 _cell.length_c 1 _cell.Z_PDB ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 7JPX _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details trimeric _pdbx_struct_assembly.oligomeric_count 3 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 6 _struct_asym.id L _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 226 A CYS 226 1_555 A SG CYS 254 A CYS 254 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.017 ? disulf ? disulf2 A SG CYS 245 A CYS 245 1_555 A SG CYS 261 A CYS 261 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.035 ? disulf ? disulf3 A SG CYS 957 A CYS 957 1_555 A SG CYS 968 A CYS 968 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.021 ? disulf ? disulf4 A SG CYS 1338 A CYS 1338 1_555 A SG CYS 1352 A CYS 1352 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? disulf ? disulf5 B SG CYS 57 E CYS 57 1_555 B SG CYS 80 E CYS 80 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.043 ? disulf ? disulf6 C SG CYS 305 F CYS 305 1_555 C SG CYS 1046 F CYS 1047 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? disulf ? disulf7 C SG CYS 356 F CYS 356 1_555 C SG CYS 1061 F CYS 1062 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.026 ? disulf ? disulf8 C SG CYS 406 F CYS 406 1_555 C SG CYS 1073 F CYS 1074 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? disulf ? disulf9 C SG CYS 669 F CYS 670 1_555 C SG CYS 699 F CYS 700 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? disulf ? disulf10 C SG CYS 843 F CYS 844 1_555 C SG CYS 852 F CYS 853 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.027 ? disulf ? disulf11 C SG CYS 906 F CYS 907 1_555 C SG CYS 976 F CYS 977 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? disulf ? disulf12 C SG CYS 998 F CYS 999 1_555 C SG CYS 1028 F CYS 1029 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.028 ? disulf ? disulf13 C SG CYS 1001 F CYS 1002 1_555 C SG CYS 1026 F CYS 1027 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? metalc ? metalc1 A OE1 GLU 292 A GLU 292 1_555 D CA CA . A CA 1901 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.957 ? metalc ? metalc2 A OE1 GLU 614 A GLU 614 1_555 D CA CA . A CA 1901 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.962 ? metalc ? metalc3 A OE1 GLU 1014 A GLU 1014 1_555 D CA CA . A CA 1901 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.838 ? metalc ? metalc4 A OE2 GLU 1014 A GLU 1014 1_555 D CA CA . A CA 1901 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.575 ? # _chem_comp.formula 'C44 H88 N O8 P' _chem_comp.formula_weight 790.145 _chem_comp.id PC1 _chem_comp.mon_nstd_flag . _chem_comp.name 1,2-DIACYL-SN-GLYCERO-3-PHOSPHOCHOLINE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 3-SN-PHOSPHATIDYLCHOLINE # _atom_sites.entry_id 7JPX _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code D 4 CA A 1 1901 1902 CA CA . E 5 3PE A 1 1902 1903 3PE 3PE . F 5 3PE A 1 1903 1904 3PE 3PE . G 5 3PE A 1 1904 1905 3PE 3PE . H 5 3PE A 1 1905 1906 3PE 3PE . I 5 3PE A 1 1906 1907 3PE 3PE . J 5 3PE A 1 1907 1908 3PE 3PE . K 5 3PE A 1 1908 1909 3PE 3PE . L 6 PC1 A 1 1909 1910 PC1 PC1 . M 5 3PE A 1 1910 1911 3PE 3PE . N 5 3PE A 1 1911 1912 3PE 3PE . O 7 POV A 1 1912 1913 POV POV . P 8 6UB A 1 1913 2001 6UB 6UB . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 O O12 PC1 . . . L 6 178.214 145.924 141.483 1 20 -1 O12 PC1 1909 A 1 HETATM 2 P P PC1 . . . L 6 177.397 144.656 141.549 1 20 ? P PC1 1909 A 1 HETATM 3 O O14 PC1 . . . L 6 177.805 143.449 140.741 1 20 ? O14 PC1 1909 A 1 HETATM 4 O O13 PC1 . . . L 6 177.262 144.219 143.093 1 20 ? O13 PC1 1909 A 1 HETATM 5 C C11 PC1 . . . L 6 178.408 143.849 143.857 1 20 ? C11 PC1 1909 A 1 HETATM 6 C C12 PC1 . . . L 6 179.601 144.718 143.466 1 20 ? C12 PC1 1909 A 1 HETATM 7 N N PC1 . . . L 6 180.574 143.977 142.642 1 20 ? N PC1 1909 A 1 HETATM 8 C C13 PC1 . . . L 6 180.337 144.269 141.223 1 20 ? C13 PC1 1909 A 1 HETATM 9 C C14 PC1 . . . L 6 181.931 144.406 143.002 1 20 ? C14 PC1 1909 A 1 HETATM 10 C C15 PC1 . . . L 6 180.461 142.528 142.863 1 20 ? C15 PC1 1909 A 1 HETATM 11 O O11 PC1 . . . L 6 175.88 145.017 141.161 1 20 ? O11 PC1 1909 A 1 HETATM 12 C C1 PC1 . . . L 6 175.494 146.375 140.981 1 20 ? C1 PC1 1909 A 1 HETATM 13 C C2 PC1 . . . L 6 174.1 146.414 140.375 1 20 ? C2 PC1 1909 A 1 HETATM 14 O O21 PC1 . . . L 6 174.078 147.354 139.304 1 20 ? O21 PC1 1909 A 1 HETATM 15 C C21 PC1 . . . L 6 174.909 146.916 138.197 1 20 ? C21 PC1 1909 A 1 HETATM 16 O O22 PC1 . . . L 6 175.052 145.722 138.005 1 20 ? O22 PC1 1909 A 1 HETATM 17 C C22 PC1 . . . L 6 175.581 147.931 137.306 1 20 ? C22 PC1 1909 A 1 HETATM 18 C C23 PC1 . . . L 6 174.545 148.95 136.856 1 20 ? C23 PC1 1909 A 1 HETATM 19 C C24 PC1 . . . L 6 175.175 150.028 135.985 1 20 ? C24 PC1 1909 A 1 HETATM 20 C C25 PC1 . . . L 6 174.158 151.111 135.65 1 20 ? C25 PC1 1909 A 1 HETATM 21 C C26 PC1 . . . L 6 172.771 150.513 135.444 1 20 ? C26 PC1 1909 A 1 HETATM 22 C C27 PC1 . . . L 6 171.83 151.529 134.809 1 20 ? C27 PC1 1909 A 1 HETATM 23 C C28 PC1 . . . L 6 171.094 150.927 133.618 1 20 ? C28 PC1 1909 A 1 HETATM 24 C C29 PC1 . . . L 6 169.588 151.127 133.742 1 20 ? C29 PC1 1909 A 1 HETATM 25 C C2A PC1 . . . L 6 169.214 152.593 133.566 1 20 ? C2A PC1 1909 A 1 HETATM 26 C C2B PC1 . . . L 6 167.705 152.785 133.662 1 20 ? C2B PC1 1909 A 1 HETATM 27 C C2C PC1 . . . L 6 167.275 154.099 133.021 1 20 ? C2C PC1 1909 A 1 HETATM 28 C C2D PC1 . . . L 6 166.098 154.718 133.766 1 20 ? C2D PC1 1909 A 1 HETATM 29 C C2E PC1 . . . L 6 164.861 153.831 133.678 1 20 ? C2E PC1 1909 A 1 HETATM 30 C C2F PC1 . . . L 6 164.295 153.814 132.263 1 20 ? C2F PC1 1909 A 1 HETATM 31 C C2G PC1 . . . L 6 162.774 153.721 132.271 1 20 ? C2G PC1 1909 A 1 HETATM 32 C C2H PC1 . . . L 6 162.221 153.856 133.684 1 20 ? C2H PC1 1909 A 1 HETATM 33 C C2I PC1 . . . L 6 161.586 155.213 133.89 1 20 ? C2I PC1 1909 A 1 HETATM 34 C C3 PC1 . . . L 6 173.098 146.813 141.451 1 20 ? C3 PC1 1909 A 1 HETATM 35 O O31 PC1 . . . L 6 173.072 148.228 141.581 1 20 ? O31 PC1 1909 A 1 HETATM 36 C C31 PC1 . . . L 6 172.309 149.023 140.637 1 20 ? C31 PC1 1909 A 1 HETATM 37 O O32 PC1 . . . L 6 172.754 150.1 140.28 1 20 ? O32 PC1 1909 A 1 HETATM 38 C C32 PC1 . . . L 6 170.986 148.52 140.116 1 20 ? C32 PC1 1909 A 1 HETATM 39 C C33 PC1 . . . L 6 170.678 149.196 138.786 1 20 ? C33 PC1 1909 A 1 HETATM 40 C C34 PC1 . . . L 6 169.179 149.375 138.604 1 20 ? C34 PC1 1909 A 1 HETATM 41 C C35 PC1 . . . L 6 168.745 149.013 137.192 1 20 ? C35 PC1 1909 A 1 HETATM 42 C C36 PC1 . . . L 6 167.677 149.977 136.696 1 20 ? C36 PC1 1909 A 1 HETATM 43 C C37 PC1 . . . L 6 166.28 149.476 137.027 1 20 ? C37 PC1 1909 A 1 HETATM 44 C C38 PC1 . . . L 6 165.587 148.973 135.77 1 20 ? C38 PC1 1909 A 1 HETATM 45 C C39 PC1 . . . L 6 164.456 149.9 135.348 1 20 ? C39 PC1 1909 A 1 HETATM 46 C C3A PC1 . . . L 6 163.337 149.102 134.694 1 20 ? C3A PC1 1909 A 1 HETATM 47 C C3B PC1 . . . L 6 162.124 149.977 134.41 1 20 ? C3B PC1 1909 A 1 HETATM 48 C C3C PC1 . . . L 6 160.942 149.131 133.951 1 20 ? C3C PC1 1909 A 1 HETATM 49 C C3D PC1 . . . L 6 159.931 149.972 133.183 1 20 ? C3D PC1 1909 A 1 HETATM 50 C C3E PC1 . . . L 6 159.19 149.133 132.151 1 20 ? C3E PC1 1909 A 1 HETATM 51 C C3F PC1 . . . L 6 157.759 148.852 132.596 1 20 ? C3F PC1 1909 A 1 HETATM 52 C C3G PC1 . . . L 6 156.764 149.736 131.851 1 20 ? C3G PC1 1909 A 1 HETATM 53 C C3H PC1 . . . L 6 155.916 148.915 130.887 1 20 ? C3H PC1 1909 A 1 HETATM 54 C C3I PC1 . . . L 6 155.572 147.567 131.482 1 20 ? C3I PC1 1909 A 1 # _model_server_stats.io_time_ms 15 _model_server_stats.parse_time_ms 12 _model_server_stats.create_model_time_ms 24 _model_server_stats.query_time_ms 316 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 54 #