data_7JPX # _model_server_result.job_id j-rZe1Mcu4bPfenkShAtGA _model_server_result.datetime_utc '2024-11-04 22:50:19' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7jpx # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"N","auth_seq_id":1911}' # _entry.id 7JPX # _exptl.entry_id 7JPX _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 748.065 _entity.id 5 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 1,2-DIACYL-SN-GLYCERO-3-PHOSPHOETHANOLAMINE _entity.pdbx_number_of_molecules 9 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 7JPX _cell.length_a 1 _cell.length_b 1 _cell.length_c 1 _cell.Z_PDB ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 7JPX _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details trimeric _pdbx_struct_assembly.oligomeric_count 3 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 5 E N N ? 5 F N N ? 5 G N N ? 5 H N N ? 5 I N N ? 5 J N N ? 5 K N N ? 5 M N N ? 5 N N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 226 A CYS 226 1_555 A SG CYS 254 A CYS 254 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.017 ? disulf ? disulf2 A SG CYS 245 A CYS 245 1_555 A SG CYS 261 A CYS 261 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.035 ? disulf ? disulf3 A SG CYS 957 A CYS 957 1_555 A SG CYS 968 A CYS 968 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.021 ? disulf ? disulf4 A SG CYS 1338 A CYS 1338 1_555 A SG CYS 1352 A CYS 1352 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? disulf ? disulf5 B SG CYS 57 E CYS 57 1_555 B SG CYS 80 E CYS 80 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.043 ? disulf ? disulf6 C SG CYS 305 F CYS 305 1_555 C SG CYS 1046 F CYS 1047 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? disulf ? disulf7 C SG CYS 356 F CYS 356 1_555 C SG CYS 1061 F CYS 1062 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.026 ? disulf ? disulf8 C SG CYS 406 F CYS 406 1_555 C SG CYS 1073 F CYS 1074 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? disulf ? disulf9 C SG CYS 669 F CYS 670 1_555 C SG CYS 699 F CYS 700 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? disulf ? disulf10 C SG CYS 843 F CYS 844 1_555 C SG CYS 852 F CYS 853 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.027 ? disulf ? disulf11 C SG CYS 906 F CYS 907 1_555 C SG CYS 976 F CYS 977 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? disulf ? disulf12 C SG CYS 998 F CYS 999 1_555 C SG CYS 1028 F CYS 1029 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.028 ? disulf ? disulf13 C SG CYS 1001 F CYS 1002 1_555 C SG CYS 1026 F CYS 1027 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? metalc ? metalc1 A OE1 GLU 292 A GLU 292 1_555 D CA CA . A CA 1901 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.957 ? metalc ? metalc2 A OE1 GLU 614 A GLU 614 1_555 D CA CA . A CA 1901 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.962 ? metalc ? metalc3 A OE1 GLU 1014 A GLU 1014 1_555 D CA CA . A CA 1901 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.838 ? metalc ? metalc4 A OE2 GLU 1014 A GLU 1014 1_555 D CA CA . A CA 1901 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.575 ? # _chem_comp.formula 'C41 H82 N O8 P' _chem_comp.formula_weight 748.065 _chem_comp.id 3PE _chem_comp.mon_nstd_flag . _chem_comp.name 1,2-DIACYL-SN-GLYCERO-3-PHOSPHOETHANOLAMINE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 3-SN-PHOSPHATIDYLETHANOLAMINE # _atom_sites.entry_id 7JPX _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code D 4 CA A 1 1901 1902 CA CA . E 5 3PE A 1 1902 1903 3PE 3PE . F 5 3PE A 1 1903 1904 3PE 3PE . G 5 3PE A 1 1904 1905 3PE 3PE . H 5 3PE A 1 1905 1906 3PE 3PE . I 5 3PE A 1 1906 1907 3PE 3PE . J 5 3PE A 1 1907 1908 3PE 3PE . K 5 3PE A 1 1908 1909 3PE 3PE . L 6 PC1 A 1 1909 1910 PC1 PC1 . M 5 3PE A 1 1910 1911 3PE 3PE . N 5 3PE A 1 1911 1912 3PE 3PE . O 7 POV A 1 1912 1913 POV POV . P 8 6UB A 1 1913 2001 6UB 6UB . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P P 3PE . . . N 5 178.154 160.714 146.546 1 20 ? P 3PE 1911 A 1 HETATM 2 N N 3PE . . . N 5 180.824 159.319 148.388 1 20 ? N 3PE 1911 A 1 HETATM 3 O O11 3PE . . . N 5 177.614 159.263 146.116 1 20 ? O11 3PE 1911 A 1 HETATM 4 O O12 3PE . . . N 5 177.018 161.699 146.417 1 20 -1 O12 3PE 1911 A 1 HETATM 5 O O13 3PE . . . N 5 178.47 160.518 148.111 1 20 ? O13 3PE 1911 A 1 HETATM 6 O O14 3PE . . . N 5 179.453 160.969 145.823 1 20 ? O14 3PE 1911 A 1 HETATM 7 C C11 3PE . . . N 5 178.387 159.228 148.706 1 20 ? C11 3PE 1911 A 1 HETATM 8 C C12 3PE . . . N 5 179.741 158.864 149.298 1 20 ? C12 3PE 1911 A 1 HETATM 9 C C1 3PE . . . N 5 176.336 158.825 146.572 1 20 ? C1 3PE 1911 A 1 HETATM 10 C C2 3PE . . . N 5 175.408 158.526 145.4 1 20 ? C2 3PE 1911 A 1 HETATM 11 C C3 3PE . . . N 5 173.966 158.754 145.832 1 20 ? C3 3PE 1911 A 1 HETATM 12 O O31 3PE . . . N 5 173.152 158.834 144.668 1 20 ? O31 3PE 1911 A 1 HETATM 13 O O32 3PE . . . N 5 171.244 159.679 145.621 1 20 ? O32 3PE 1911 A 1 HETATM 14 C C31 3PE . . . N 5 171.972 159.674 144.652 1 20 ? C31 3PE 1911 A 1 HETATM 15 C C32 3PE . . . N 5 171.658 160.524 143.449 1 20 ? C32 3PE 1911 A 1 HETATM 16 C C33 3PE . . . N 5 170.446 161.393 143.747 1 20 ? C33 3PE 1911 A 1 HETATM 17 C C34 3PE . . . N 5 169.517 161.47 142.545 1 20 ? C34 3PE 1911 A 1 HETATM 18 C C35 3PE . . . N 5 168.068 161.348 142.989 1 20 ? C35 3PE 1911 A 1 HETATM 19 C C36 3PE . . . N 5 167.126 161.948 141.957 1 20 ? C36 3PE 1911 A 1 HETATM 20 C C37 3PE . . . N 5 165.679 161.771 142.392 1 20 ? C37 3PE 1911 A 1 HETATM 21 C C38 3PE . . . N 5 164.997 163.121 142.561 1 20 ? C38 3PE 1911 A 1 HETATM 22 C C39 3PE . . . N 5 163.862 163.278 141.558 1 20 ? C39 3PE 1911 A 1 HETATM 23 C C3A 3PE . . . N 5 163.395 164.724 141.48 1 20 ? C3A 3PE 1911 A 1 HETATM 24 C C3B 3PE . . . N 5 162.639 164.968 140.18 1 20 ? C3B 3PE 1911 A 1 HETATM 25 C C3C 3PE . . . N 5 161.172 165.278 140.444 1 20 ? C3C 3PE 1911 A 1 HETATM 26 C C3D 3PE . . . N 5 160.325 165.004 139.208 1 20 ? C3D 3PE 1911 A 1 HETATM 27 C C3E 3PE . . . N 5 159.009 164.329 139.581 1 20 ? C3E 3PE 1911 A 1 HETATM 28 C C3F 3PE . . . N 5 158.861 164.179 141.092 1 20 ? C3F 3PE 1911 A 1 HETATM 29 C C3G 3PE . . . N 5 157.457 163.717 141.457 1 20 ? C3G 3PE 1911 A 1 HETATM 30 C C3H 3PE . . . N 5 156.502 163.89 140.283 1 20 ? C3H 3PE 1911 A 1 HETATM 31 C C3I 3PE . . . N 5 156.56 162.703 139.346 1 20 ? C3I 3PE 1911 A 1 HETATM 32 O O21 3PE . . . N 5 175.706 159.384 144.302 1 20 ? O21 3PE 1911 A 1 HETATM 33 O O22 3PE . . . N 5 177.587 158.144 143.821 1 20 ? O22 3PE 1911 A 1 HETATM 34 C C21 3PE . . . N 5 176.637 158.765 143.377 1 20 ? C21 3PE 1911 A 1 HETATM 35 C C22 3PE . . . N 5 176.423 158.894 141.889 1 20 ? C22 3PE 1911 A 1 HETATM 36 C C23 3PE . . . N 5 176.289 160.369 141.534 1 20 ? C23 3PE 1911 A 1 HETATM 37 C C24 3PE . . . N 5 174.857 160.71 141.143 1 20 ? C24 3PE 1911 A 1 HETATM 38 C C25 3PE . . . N 5 174.829 161.844 140.127 1 20 ? C25 3PE 1911 A 1 HETATM 39 C C26 3PE . . . N 5 173.668 161.677 139.156 1 20 ? C26 3PE 1911 A 1 HETATM 40 C C27 3PE . . . N 5 172.715 162.864 139.237 1 20 ? C27 3PE 1911 A 1 HETATM 41 C C28 3PE . . . N 5 171.662 162.649 140.317 1 20 ? C28 3PE 1911 A 1 HETATM 42 C C29 3PE . . . N 5 170.784 163.882 140.486 1 20 ? C29 3PE 1911 A 1 HETATM 43 C C2A 3PE . . . N 5 170.383 164.456 139.135 1 20 ? C2A 3PE 1911 A 1 HETATM 44 C C2B 3PE . . . N 5 168.882 164.328 138.907 1 20 ? C2B 3PE 1911 A 1 HETATM 45 C C2C 3PE . . . N 5 168.242 165.699 138.728 1 20 ? C2C 3PE 1911 A 1 HETATM 46 C C2D 3PE . . . N 5 168.891 166.727 139.648 1 20 ? C2D 3PE 1911 A 1 HETATM 47 C C2E 3PE . . . N 5 168.217 168.088 139.526 1 20 ? C2E 3PE 1911 A 1 HETATM 48 C C2F 3PE . . . N 5 166.969 168.16 140.395 1 20 ? C2F 3PE 1911 A 1 HETATM 49 C C2G 3PE . . . N 5 166.145 166.887 140.259 1 20 ? C2G 3PE 1911 A 1 HETATM 50 C C2H 3PE . . . N 5 164.653 167.169 140.382 1 20 ? C2H 3PE 1911 A 1 HETATM 51 C C2I 3PE . . . N 5 163.991 167.201 139.022 1 20 ? C2I 3PE 1911 A 1 # _model_server_stats.io_time_ms 13 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 21 _model_server_stats.query_time_ms 273 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 51 #