data_7JPX
#
_model_server_result.job_id            MNbaUw7mtZN_sZaUeuMxiw 
_model_server_result.datetime_utc      '2025-07-18 05:23:06' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          7jpx 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"O","auth_seq_id":1912}' 
#
_entry.id    7JPX 
#
_exptl.entry_id    7JPX 
_exptl.method      'ELECTRON MICROSCOPY' 
#
_entity.details                     ? 
_entity.formula_weight              760.076 
_entity.id                          7 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            '(2S)-3-(hexadecanoyloxy)-2-[(9Z)-octadec-9-enoyloxy]propyl 2-(trimethylammonio)ethyl phosphate' 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            7JPX 
_cell.length_a            1 
_cell.length_b            1 
_cell.length_c            1 
_cell.Z_PDB               ? 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 7JPX 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        1 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    trimeric 
_pdbx_struct_assembly.oligomeric_count      3 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    ? 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      7 
_struct_asym.id                             O 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 A SG CYS 226 A CYS 226 1_555 A SG CYS 254 A CYS 254 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.017 ? 
disulf ? disulf2 A SG CYS 245 A CYS 245 1_555 A SG CYS 261 A CYS 261 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.035 ? 
disulf ? disulf3 A SG CYS 957 A CYS 957 1_555 A SG CYS 968 A CYS 968 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.021 ? 
disulf ? disulf4 A SG CYS 1338 A CYS 1338 1_555 A SG CYS 1352 A CYS 1352 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? 
disulf ? disulf5 B SG CYS 57 E CYS 57 1_555 B SG CYS 80 E CYS 80 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.043 ? 
disulf ? disulf6 C SG CYS 305 F CYS 305 1_555 C SG CYS 1046 F CYS 1047 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? 
disulf ? disulf7 C SG CYS 356 F CYS 356 1_555 C SG CYS 1061 F CYS 1062 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.026 ? 
disulf ? disulf8 C SG CYS 406 F CYS 406 1_555 C SG CYS 1073 F CYS 1074 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? 
disulf ? disulf9 C SG CYS 669 F CYS 670 1_555 C SG CYS 699 F CYS 700 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? 
disulf ? disulf10 C SG CYS 843 F CYS 844 1_555 C SG CYS 852 F CYS 853 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.027 ? 
disulf ? disulf11 C SG CYS 906 F CYS 907 1_555 C SG CYS 976 F CYS 977 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? 
disulf ? disulf12 C SG CYS 998 F CYS 999 1_555 C SG CYS 1028 F CYS 1029 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.028 ? 
disulf ? disulf13 C SG CYS 1001 F CYS 1002 1_555 C SG CYS 1026 F CYS 1027 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? 
metalc ? metalc1 A OE1 GLU 292 A GLU 292 1_555 D CA CA . A CA 1901 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.957 ? 
metalc ? metalc2 A OE1 GLU 614 A GLU 614 1_555 D CA CA . A CA 1901 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.962 ? 
metalc ? metalc3 A OE1 GLU 1014 A GLU 1014 1_555 D CA CA . A CA 1901 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.838 ? 
metalc ? metalc4 A OE2 GLU 1014 A GLU 1014 1_555 D CA CA . A CA 1901 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.575 ? 
#
_chem_comp.formula           'C42 H82 N O8 P' 
_chem_comp.formula_weight    760.076 
_chem_comp.id                POV 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              '(2S)-3-(hexadecanoyloxy)-2-[(9Z)-octadec-9-enoyloxy]propyl 2-(trimethylammonio)ethyl phosphate' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     POPC 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
N C12 POV sing 585 n n 
N C13 POV sing 586 n n 
N C14 POV sing 587 n n 
N C15 POV sing 588 n n 
P O11 POV sing 589 n n 
P O12 POV sing 590 n n 
P O13 POV sing 591 n n 
P O14 POV doub 592 n n 
C1 C2 POV sing 593 n n 
C1 O11 POV sing 594 n n 
C1 H1 POV sing 595 n n 
C1 H1A POV sing 596 n n 
C2 C3 POV sing 597 n n 
C2 O21 POV sing 598 n n 
C2 H2 POV sing 599 n n 
C3 O31 POV sing 600 n n 
C3 H3 POV sing 601 n n 
C3 H3A POV sing 602 n n 
C210 C211 POV sing 603 n n 
C210 C29 POV doub 604 z n 
C210 H210 POV sing 605 n n 
C310 C311 POV sing 606 n n 
C310 C39 POV sing 607 n n 
C310 H310 POV sing 608 n n 
C310 H31A POV sing 609 n n 
C11 C12 POV sing 610 n n 
C11 O12 POV sing 611 n n 
C11 H11 POV sing 612 n n 
C11 H11A POV sing 613 n n 
C211 C212 POV sing 614 n n 
C211 H211 POV sing 615 n n 
C211 H21A POV sing 616 n n 
C311 C312 POV sing 617 n n 
C311 H311 POV sing 618 n n 
C311 H31B POV sing 619 n n 
C12 H12 POV sing 620 n n 
C12 H12A POV sing 621 n n 
C212 C213 POV sing 622 n n 
C212 H212 POV sing 623 n n 
C212 H21B POV sing 624 n n 
C312 C313 POV sing 625 n n 
C312 H312 POV sing 626 n n 
C312 H31C POV sing 627 n n 
C13 H13 POV sing 628 n n 
C13 H13A POV sing 629 n n 
C13 H13B POV sing 630 n n 
C213 C214 POV sing 631 n n 
C213 H213 POV sing 632 n n 
C213 H21C POV sing 633 n n 
C313 C314 POV sing 634 n n 
C313 H313 POV sing 635 n n 
C313 H31D POV sing 636 n n 
C14 H14 POV sing 637 n n 
C14 H14A POV sing 638 n n 
C14 H14B POV sing 639 n n 
C214 C215 POV sing 640 n n 
C214 H214 POV sing 641 n n 
C214 H21D POV sing 642 n n 
C314 C315 POV sing 643 n n 
C314 H314 POV sing 644 n n 
C314 H31E POV sing 645 n n 
C15 H15 POV sing 646 n n 
C15 H15A POV sing 647 n n 
C15 H15B POV sing 648 n n 
C215 C216 POV sing 649 n n 
C215 H215 POV sing 650 n n 
C215 H21E POV sing 651 n n 
C315 C316 POV sing 652 n n 
C315 H315 POV sing 653 n n 
C315 H31F POV sing 654 n n 
C216 C217 POV sing 655 n n 
C216 H216 POV sing 656 n n 
C216 H21F POV sing 657 n n 
C316 H316 POV sing 658 n n 
C316 H31G POV sing 659 n n 
C316 H31H POV sing 660 n n 
C217 C218 POV sing 661 n n 
C217 H217 POV sing 662 n n 
C217 H21G POV sing 663 n n 
C218 H218 POV sing 664 n n 
C218 H21H POV sing 665 n n 
C218 H21J POV sing 666 n n 
C21 O21 POV sing 667 n n 
C21 C22 POV sing 668 n n 
C21 O22 POV doub 669 n n 
C22 C23 POV sing 670 n n 
C22 H22 POV sing 671 n n 
C22 H22A POV sing 672 n n 
C23 C24 POV sing 673 n n 
C23 H23 POV sing 674 n n 
C23 H23A POV sing 675 n n 
C24 C25 POV sing 676 n n 
C24 H24 POV sing 677 n n 
C24 H24A POV sing 678 n n 
C25 C26 POV sing 679 n n 
C25 H25 POV sing 680 n n 
C25 H25A POV sing 681 n n 
C26 C27 POV sing 682 n n 
C26 H26 POV sing 683 n n 
C26 H26A POV sing 684 n n 
C27 C28 POV sing 685 n n 
C27 H27 POV sing 686 n n 
C27 H27A POV sing 687 n n 
C28 C29 POV sing 688 n n 
C28 H28 POV sing 689 n n 
C28 H28A POV sing 690 n n 
C29 H29 POV sing 691 n n 
C31 O31 POV sing 692 n n 
C31 C32 POV sing 693 n n 
C31 O32 POV doub 694 n n 
C32 C33 POV sing 695 n n 
C32 H32 POV sing 696 n n 
C32 H32A POV sing 697 n n 
C33 C34 POV sing 698 n n 
C33 H33 POV sing 699 n n 
C33 H33A POV sing 700 n n 
C34 C35 POV sing 701 n n 
C34 H34 POV sing 702 n n 
C34 H34A POV sing 703 n n 
C35 C36 POV sing 704 n n 
C35 H35 POV sing 705 n n 
C35 H35A POV sing 706 n n 
C36 C37 POV sing 707 n n 
C36 H36 POV sing 708 n n 
C36 H36A POV sing 709 n n 
C37 C38 POV sing 710 n n 
C37 H37 POV sing 711 n n 
C37 H37A POV sing 712 n n 
C38 C39 POV sing 713 n n 
C38 H38 POV sing 714 n n 
C38 H38A POV sing 715 n n 
C39 H39 POV sing 716 n n 
C39 H39A POV sing 717 n n 
#
_atom_sites.entry_id                     7JPX 
_atom_sites.fract_transf_matrix[1][1]    1 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    1 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    1 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
D 4 CA A 1 1901 1902 CA CA . 
E 5 3PE A 1 1902 1903 3PE 3PE . 
F 5 3PE A 1 1903 1904 3PE 3PE . 
G 5 3PE A 1 1904 1905 3PE 3PE . 
H 5 3PE A 1 1905 1906 3PE 3PE . 
I 5 3PE A 1 1906 1907 3PE 3PE . 
J 5 3PE A 1 1907 1908 3PE 3PE . 
K 5 3PE A 1 1908 1909 3PE 3PE . 
L 6 PC1 A 1 1909 1910 PC1 PC1 . 
M 5 3PE A 1 1910 1911 3PE 3PE . 
N 5 3PE A 1 1911 1912 3PE 3PE . 
O 7 POV A 1 1912 1913 POV POV . 
P 8 6UB A 1 1913 2001 6UB 6UB . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 N N POV . . . O 7 150.106 165.136 149.464 1 23.31 ? N POV 1912 A 1 
HETATM 2 P P POV . . . O 7 149.606 161.083 150.903 1 23.31 ? P POV 1912 A 1 
HETATM 3 C C1 POV . . . O 7 150.848 159.527 149.16 1 23.31 ? C1 POV 1912 A 1 
HETATM 4 C C2 POV . . . O 7 149.725 159.035 148.25 1 23.31 ? C2 POV 1912 A 1 
HETATM 5 C C3 POV . . . O 7 150.286 158.039 147.243 1 23.31 ? C3 POV 1912 A 1 
HETATM 6 C C210 POV . . . O 7 144.462 151.468 144.673 1 23.31 ? C210 POV 1912 A 1 
HETATM 7 C C310 POV . . . O 7 148.222 146.454 143.249 1 23.31 ? C310 POV 1912 A 1 
HETATM 8 C C11 POV . . . O 7 148.571 163.433 150.297 1 23.31 ? C11 POV 1912 A 1 
HETATM 9 O O11 POV . . . O 7 150.571 160.844 149.637 1 23.31 ? O11 POV 1912 A 1 
HETATM 10 C C211 POV . . . O 7 143.659 152.278 143.688 1 23.31 ? C211 POV 1912 A 1 
HETATM 11 C C311 POV . . . O 7 148.255 145.229 144.157 1 23.31 ? C311 POV 1912 A 1 
HETATM 12 C C12 POV . . . O 7 149.448 163.867 149.131 1 23.31 ? C12 POV 1912 A 1 
HETATM 13 O O12 POV . . . O 7 148.444 162.014 150.291 1 23.31 ? O12 POV 1912 A 1 
HETATM 14 C C212 POV . . . O 7 142.777 151.338 142.879 1 23.31 ? C212 POV 1912 A 1 
HETATM 15 C C13 POV . . . O 7 149.134 166.23 149.349 1 23.31 ? C13 POV 1912 A 1 
HETATM 16 O O13 POV . . . O 7 148.991 159.757 151.285 1 23.31 -1 O13 POV 1912 A 1 
HETATM 17 C C213 POV . . . O 7 143.596 150.21 142.266 1 23.31 ? C213 POV 1912 A 1 
HETATM 18 C C14 POV . . . O 7 150.614 165.077 150.84 1 23.31 ? C14 POV 1912 A 1 
HETATM 19 O O14 POV . . . O 7 150.365 161.884 151.933 1 23.31 ? O14 POV 1912 A 1 
HETATM 20 C C214 POV . . . O 7 142.69 149.185 141.597 1 23.31 ? C214 POV 1912 A 1 
HETATM 21 C C15 POV . . . O 7 151.223 165.374 148.539 1 23.31 ? C15 POV 1912 A 1 
HETATM 22 C C215 POV . . . O 7 141.731 148.558 142.603 1 23.31 ? C215 POV 1912 A 1 
HETATM 23 C C216 POV . . . O 7 140.967 147.389 141.992 1 23.31 ? C216 POV 1912 A 1 
HETATM 24 C C217 POV . . . O 7 141.194 147.314 140.487 1 23.31 ? C217 POV 1912 A 1 
HETATM 25 C C218 POV . . . O 7 141.322 145.879 140.025 1 23.31 ? C218 POV 1912 A 1 
HETATM 26 C C21 POV . . . O 7 147.68 160.062 147.589 1 23.31 ? C21 POV 1912 A 1 
HETATM 27 O O21 POV . . . O 7 149.131 160.126 147.547 1 23.31 ? O21 POV 1912 A 1 
HETATM 28 C C22 POV . . . O 7 146.914 159.394 146.475 1 23.31 ? C22 POV 1912 A 1 
HETATM 29 O O22 POV . . . O 7 147.09 160.55 148.537 1 23.31 ? O22 POV 1912 A 1 
HETATM 30 C C23 POV . . . O 7 146.191 158.174 147.031 1 23.31 ? C23 POV 1912 A 1 
HETATM 31 C C24 POV . . . O 7 146.988 157.534 148.161 1 23.31 ? C24 POV 1912 A 1 
HETATM 32 C C25 POV . . . O 7 147.053 156.023 147.992 1 23.31 ? C25 POV 1912 A 1 
HETATM 33 C C26 POV . . . O 7 145.975 155.544 147.029 1 23.31 ? C26 POV 1912 A 1 
HETATM 34 C C27 POV . . . O 7 146.026 154.032 146.861 1 23.31 ? C27 POV 1912 A 1 
HETATM 35 C C28 POV . . . O 7 145.103 153.586 145.736 1 23.31 ? C28 POV 1912 A 1 
HETATM 36 C C29 POV . . . O 7 145.14 152.082 145.635 1 23.31 ? C29 POV 1912 A 1 
HETATM 37 C C31 POV . . . O 7 150.285 155.544 147.287 1 23.31 ? C31 POV 1912 A 1 
HETATM 38 O O31 POV . . . O 7 150.596 156.819 147.909 1 23.31 ? O31 POV 1912 A 1 
HETATM 39 C C32 POV . . . O 7 150.454 155.339 145.802 1 23.31 ? C32 POV 1912 A 1 
HETATM 40 O O32 POV . . . O 7 149.881 154.635 147.989 1 23.31 ? O32 POV 1912 A 1 
HETATM 41 C C33 POV . . . O 7 150.029 153.917 145.453 1 23.31 ? C33 POV 1912 A 1 
HETATM 42 C C34 POV . . . O 7 150.05 153.679 143.95 1 23.31 ? C34 POV 1912 A 1 
HETATM 43 C C35 POV . . . O 7 150.276 152.205 143.639 1 23.31 ? C35 POV 1912 A 1 
HETATM 44 C C36 POV . . . O 7 148.972 151.416 143.679 1 23.31 ? C36 POV 1912 A 1 
HETATM 45 C C37 POV . . . O 7 149.177 150.048 144.32 1 23.31 ? C37 POV 1912 A 1 
HETATM 46 C C38 POV . . . O 7 148.422 148.952 143.574 1 23.31 ? C38 POV 1912 A 1 
HETATM 47 C C39 POV . . . O 7 149.064 147.59 143.819 1 23.31 ? C39 POV 1912 A 1 
#
_model_server_stats.io_time_ms              22 
_model_server_stats.parse_time_ms           11 
_model_server_stats.create_model_time_ms    36 
_model_server_stats.query_time_ms           331 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           47 
#