data_7JPX # _model_server_result.job_id 71hhJBI56LMapqK9_NjjDg _model_server_result.datetime_utc '2024-11-04 22:50:32' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7jpx # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"P","auth_seq_id":1913}' # _entry.id 7JPX # _exptl.entry_id 7JPX _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 408.876 _entity.id 8 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description amlodipine _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 7JPX _cell.length_a 1 _cell.length_b 1 _cell.length_c 1 _cell.Z_PDB ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 7JPX _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details trimeric _pdbx_struct_assembly.oligomeric_count 3 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 8 _struct_asym.id P _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 226 A CYS 226 1_555 A SG CYS 254 A CYS 254 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.017 ? disulf ? disulf2 A SG CYS 245 A CYS 245 1_555 A SG CYS 261 A CYS 261 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.035 ? disulf ? disulf3 A SG CYS 957 A CYS 957 1_555 A SG CYS 968 A CYS 968 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.021 ? disulf ? disulf4 A SG CYS 1338 A CYS 1338 1_555 A SG CYS 1352 A CYS 1352 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? disulf ? disulf5 B SG CYS 57 E CYS 57 1_555 B SG CYS 80 E CYS 80 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.043 ? disulf ? disulf6 C SG CYS 305 F CYS 305 1_555 C SG CYS 1046 F CYS 1047 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? disulf ? disulf7 C SG CYS 356 F CYS 356 1_555 C SG CYS 1061 F CYS 1062 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.026 ? disulf ? disulf8 C SG CYS 406 F CYS 406 1_555 C SG CYS 1073 F CYS 1074 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? disulf ? disulf9 C SG CYS 669 F CYS 670 1_555 C SG CYS 699 F CYS 700 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? disulf ? disulf10 C SG CYS 843 F CYS 844 1_555 C SG CYS 852 F CYS 853 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.027 ? disulf ? disulf11 C SG CYS 906 F CYS 907 1_555 C SG CYS 976 F CYS 977 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? disulf ? disulf12 C SG CYS 998 F CYS 999 1_555 C SG CYS 1028 F CYS 1029 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.028 ? disulf ? disulf13 C SG CYS 1001 F CYS 1002 1_555 C SG CYS 1026 F CYS 1027 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? metalc ? metalc1 A OE1 GLU 292 A GLU 292 1_555 D CA CA . A CA 1901 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.957 ? metalc ? metalc2 A OE1 GLU 614 A GLU 614 1_555 D CA CA . A CA 1901 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.962 ? metalc ? metalc3 A OE1 GLU 1014 A GLU 1014 1_555 D CA CA . A CA 1901 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.838 ? metalc ? metalc4 A OE2 GLU 1014 A GLU 1014 1_555 D CA CA . A CA 1901 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.575 ? # _chem_comp.formula 'C20 H25 Cl N2 O5' _chem_comp.formula_weight 408.876 _chem_comp.id 6UB _chem_comp.mon_nstd_flag . _chem_comp.name amlodipine _chem_comp.type non-polymer _chem_comp.pdbx_synonyms '~{O}3-ethyl ~{O}5-methyl (4~{S})-2-(2-azanylethoxymethyl)-4-(2-chlorophenyl)-6-methyl-1,4-dihydropyridine-3,5-dicarboxylate' # _atom_sites.entry_id 7JPX _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code D 4 CA A 1 1901 1902 CA CA . E 5 3PE A 1 1902 1903 3PE 3PE . F 5 3PE A 1 1903 1904 3PE 3PE . G 5 3PE A 1 1904 1905 3PE 3PE . H 5 3PE A 1 1905 1906 3PE 3PE . I 5 3PE A 1 1906 1907 3PE 3PE . J 5 3PE A 1 1907 1908 3PE 3PE . K 5 3PE A 1 1908 1909 3PE 3PE . L 6 PC1 A 1 1909 1910 PC1 PC1 . M 5 3PE A 1 1910 1911 3PE 3PE . N 5 3PE A 1 1911 1912 3PE 3PE . O 7 POV A 1 1912 1913 POV POV . P 8 6UB A 1 1913 2001 6UB 6UB . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C CAA 6UB . . . P 8 148.424 171.786 149.042 1 22.14 ? CAA 6UB 1913 A 1 HETATM 2 C CAL 6UB . . . P 8 149.239 172.158 150.278 1 22.14 ? CAL 6UB 1913 A 1 HETATM 3 O OAS 6UB . . . P 8 149.158 171.122 151.21 1 22.14 ? OAS 6UB 1913 A 1 HETATM 4 C CAV 6UB . . . P 8 149.622 171.469 152.479 1 22.14 ? CAV 6UB 1913 A 1 HETATM 5 O OAF 6UB . . . P 8 150.734 171.841 152.611 1 22.14 ? OAF 6UB 1913 A 1 HETATM 6 C CAY 6UB . . . P 8 148.705 171.375 153.693 1 22.14 ? CAY 6UB 1913 A 1 HETATM 7 C CAW 6UB . . . P 8 148.852 170.222 154.682 1 22.14 ? CAW 6UB 1913 A 1 HETATM 8 N NAP 6UB . . . P 8 148.231 170.324 155.989 1 22.14 ? NAP 6UB 1913 A 1 HETATM 9 C CAT 6UB . . . P 8 147.777 171.612 156.479 1 22.14 ? CAT 6UB 1913 A 1 HETATM 10 C CAX 6UB . . . P 8 147.583 172.762 155.497 1 22.14 ? CAX 6UB 1913 A 1 HETATM 11 C CBB 6UB . . . P 8 147.728 172.512 153.996 1 22.14 ? CBB 6UB 1913 A 1 HETATM 12 C CBA 6UB . . . P 8 146.347 172.128 153.421 1 22.14 ? CBA 6UB 1913 A 1 HETATM 13 C CAK 6UB . . . P 8 145.703 170.996 153.887 1 22.14 ? CAK 6UB 1913 A 1 HETATM 14 C CAI 6UB . . . P 8 144.468 170.642 153.376 1 22.14 ? CAI 6UB 1913 A 1 HETATM 15 C CAH 6UB . . . P 8 143.879 171.423 152.4 1 22.14 ? CAH 6UB 1913 A 1 HETATM 16 C CAJ 6UB . . . P 8 144.522 172.556 151.932 1 22.14 ? CAJ 6UB 1913 A 1 HETATM 17 C CAZ 6UB . . . P 8 145.757 172.909 152.443 1 22.14 ? CAZ 6UB 1913 A 1 HETATM 18 CL CLAG 6UB . . . P 8 146.585 174.366 151.84 1 22.14 ? CLAG 6UB 1913 A 1 HETATM 19 C CAU 6UB . . . P 8 147.184 174.146 155.993 1 22.14 ? CAU 6UB 1913 A 1 HETATM 20 O OAE 6UB . . . P 8 147.017 174.34 157.145 1 22.14 ? OAE 6UB 1913 A 1 HETATM 21 O OAQ 6UB . . . P 8 147.016 175.185 155.08 1 22.14 ? OAQ 6UB 1913 A 1 HETATM 22 C CAB 6UB . . . P 8 147.365 176.441 155.584 1 22.14 ? CAB 6UB 1913 A 1 HETATM 23 C CAC 6UB . . . P 8 147.193 171.709 157.885 1 22.14 ? CAC 6UB 1913 A 1 HETATM 24 C C24 6UB . . . P 8 149.233 168.843 154.157 1 22.14 ? C24 6UB 1913 A 1 HETATM 25 O O25 6UB . . . P 8 148.077 168.217 153.695 1 22.14 ? O25 6UB 1913 A 1 HETATM 26 C C26 6UB . . . P 8 148.302 166.961 153.13 1 22.14 ? C26 6UB 1913 A 1 HETATM 27 C C27 6UB . . . P 8 147.24 165.985 153.627 1 22.14 ? C27 6UB 1913 A 1 HETATM 28 N N28 6UB . . . P 8 147.845 164.675 153.775 1 22.14 ? N28 6UB 1913 A 1 # _model_server_stats.io_time_ms 12 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 22 _model_server_stats.query_time_ms 276 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 28 #