data_7JQ3 # _model_server_result.job_id HDZVyqdFNezsgSYAO5Xw9A _model_server_result.datetime_utc '2024-10-19 23:38:57' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7jq3 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":401}' # _entry.id 7JQ3 # _exptl.entry_id 7JQ3 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 562.698 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description N-[(benzyloxy)carbonyl]-O-tert-butyl-L-threonyl-N-{(2S)-1-hydroxy-3-[(3S)-2-oxopyrrolidin-3-yl]propan-2-yl}-L-leucinamide _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 101.13 _cell.angle_gamma 90 _cell.entry_id 7JQ3 _cell.length_a 45.24 _cell.length_b 53.76 _cell.length_c 113.822 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7JQ3 _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'I 1 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_655 -x+1,y,-z -1 0 0 0 1 0 0 0 -1 45.24 0 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A C GLN 127 A GLN 127 1_555 A N CSO 128 A CSO 128 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? covale ? covale2 A C CSO 128 A CSO 128 1_555 A N ALA 129 A ALA 129 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.324 ? covale ? covale3 A SG CYS 145 A CYS 145 1_555 B C27 VHP . A VHP 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.804 ? covale ? covale4 A C GLN 299 A GLN 299 1_555 A N CSO 300 A CSO 300 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.327 ? covale ? covale5 A C CSO 300 A CSO 300 1_555 A N SER 301 A SER 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.331 ? # _chem_comp.formula 'C29 H46 N4 O7' _chem_comp.formula_weight 562.698 _chem_comp.id VHP _chem_comp.mon_nstd_flag . _chem_comp.name N-[(benzyloxy)carbonyl]-O-tert-butyl-L-threonyl-N-{(2S)-1-hydroxy-3-[(3S)-2-oxopyrrolidin-3-yl]propan-2-yl}-L-leucinamide _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C7 C4 VHP sing 390 n n C7 O8 VHP sing 391 n n C36 C35 VHP sing 392 n n C5 C4 VHP doub 393 n y C5 C6 VHP sing 394 n y C4 C3 VHP sing 395 n y C6 C1 VHP doub 396 n y O8 C9 VHP sing 397 n n C35 C37 VHP sing 398 n n C35 C34 VHP sing 399 n n C3 C2 VHP doub 400 n y O29 C9 VHP doub 401 n n C1 C2 VHP sing 402 n y C9 N10 VHP sing 403 n n C34 C14 VHP sing 404 n n N10 C11 VHP sing 405 n n N13 C14 VHP sing 406 n n N13 C12 VHP sing 407 n n C14 C15 VHP sing 408 n n C11 C12 VHP sing 409 n n C11 C30 VHP sing 410 n n C12 O33 VHP doub 411 n n O32 C30 VHP sing 412 n n O32 C8 VHP sing 413 n n C15 O38 VHP doub 414 n n C15 N16 VHP sing 415 n n C16 C8 VHP sing 416 n n C30 C18 VHP sing 417 n n N16 C17 VHP sing 418 n n C8 C10 VHP sing 419 n n C8 C13 VHP sing 420 n n C27 C17 VHP sing 421 n n C27 O28 VHP sing 422 n n C17 C19 VHP sing 423 n n C19 C20 VHP sing 424 n n C20 C24 VHP sing 425 n n C20 C21 VHP sing 426 n n O26 C24 VHP doub 427 n n C24 N23 VHP sing 428 n n C21 C22 VHP sing 429 n n N23 C22 VHP sing 430 n n C1 H1 VHP sing 431 n n C10 H2 VHP sing 432 n n C10 H3 VHP sing 433 n n C10 H4 VHP sing 434 n n C11 H5 VHP sing 435 n n C13 H6 VHP sing 436 n n C13 H7 VHP sing 437 n n C13 H8 VHP sing 438 n n C14 H9 VHP sing 439 n n C16 H10 VHP sing 440 n n C16 H11 VHP sing 441 n n C16 H12 VHP sing 442 n n C17 H13 VHP sing 443 n n C18 H14 VHP sing 444 n n C18 H15 VHP sing 445 n n C18 H16 VHP sing 446 n n C19 H17 VHP sing 447 n n C19 H18 VHP sing 448 n n C2 H19 VHP sing 449 n n C20 H20 VHP sing 450 n n C21 H21 VHP sing 451 n n C21 H22 VHP sing 452 n n C22 H23 VHP sing 453 n n C22 H24 VHP sing 454 n n C27 H25 VHP sing 455 n n C27 H26 VHP sing 456 n n C3 H27 VHP sing 457 n n C30 H28 VHP sing 458 n n C34 H29 VHP sing 459 n n C34 H30 VHP sing 460 n n C35 H31 VHP sing 461 n n C36 H32 VHP sing 462 n n C36 H33 VHP sing 463 n n C36 H34 VHP sing 464 n n C37 H35 VHP sing 465 n n C37 H36 VHP sing 466 n n C37 H37 VHP sing 467 n n C5 H38 VHP sing 468 n n C6 H39 VHP sing 469 n n C7 H40 VHP sing 470 n n C7 H41 VHP sing 471 n n N10 H42 VHP sing 472 n n N13 H43 VHP sing 473 n n N16 H44 VHP sing 474 n n N23 H45 VHP sing 475 n n O28 H46 VHP sing 476 n n # _atom_sites.entry_id 7JQ3 _atom_sites.fract_transf_matrix[1][1] 0.022104 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.004348 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.018601 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.008954 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 VHP A 1 401 401 VHP r2 . C 3 HOH A 1 501 5 HOH HOH . C 3 HOH A 2 502 8 HOH HOH . C 3 HOH A 3 503 63 HOH HOH . C 3 HOH A 4 504 26 HOH HOH . C 3 HOH A 5 505 32 HOH HOH . C 3 HOH A 6 506 62 HOH HOH . C 3 HOH A 7 507 17 HOH HOH . C 3 HOH A 8 508 34 HOH HOH . C 3 HOH A 9 509 61 HOH HOH . C 3 HOH A 10 510 21 HOH HOH . C 3 HOH A 11 511 18 HOH HOH . C 3 HOH A 12 512 16 HOH HOH . C 3 HOH A 13 513 16 HOH HOH . C 3 HOH A 14 514 8 HOH HOH . C 3 HOH A 15 515 66 HOH HOH . C 3 HOH A 16 516 49 HOH HOH . C 3 HOH A 17 517 15 HOH HOH . C 3 HOH A 18 518 50 HOH HOH . C 3 HOH A 19 519 15 HOH HOH . C 3 HOH A 20 520 7 HOH HOH . C 3 HOH A 21 521 39 HOH HOH . C 3 HOH A 22 522 5 HOH HOH . C 3 HOH A 23 523 2 HOH HOH . C 3 HOH A 24 524 6 HOH HOH . C 3 HOH A 25 525 36 HOH HOH . C 3 HOH A 26 526 36 HOH HOH . C 3 HOH A 27 527 35 HOH HOH . C 3 HOH A 28 528 30 HOH HOH . C 3 HOH A 29 529 53 HOH HOH . C 3 HOH A 30 530 37 HOH HOH . C 3 HOH A 31 531 1 HOH HOH . C 3 HOH A 32 532 34 HOH HOH . C 3 HOH A 33 533 11 HOH HOH . C 3 HOH A 34 534 22 HOH HOH . C 3 HOH A 35 535 52 HOH HOH . C 3 HOH A 36 536 20 HOH HOH . C 3 HOH A 37 537 14 HOH HOH . C 3 HOH A 38 538 20 HOH HOH . C 3 HOH A 39 539 19 HOH HOH . C 3 HOH A 40 540 26 HOH HOH . C 3 HOH A 41 541 3 HOH HOH . C 3 HOH A 42 542 48 HOH HOH . C 3 HOH A 43 543 47 HOH HOH . C 3 HOH A 44 544 23 HOH HOH . C 3 HOH A 45 545 7 HOH HOH . C 3 HOH A 46 546 18 HOH HOH . C 3 HOH A 47 547 19 HOH HOH . C 3 HOH A 48 548 31 HOH HOH . C 3 HOH A 49 549 10 HOH HOH . C 3 HOH A 50 550 6 HOH HOH . C 3 HOH A 51 551 12 HOH HOH . C 3 HOH A 52 552 65 HOH HOH . C 3 HOH A 53 553 64 HOH HOH . C 3 HOH A 54 554 13 HOH HOH . C 3 HOH A 55 555 27 HOH HOH . C 3 HOH A 56 556 29 HOH HOH . C 3 HOH A 57 557 9 HOH HOH . C 3 HOH A 58 558 4 HOH HOH . C 3 HOH A 59 559 25 HOH HOH . C 3 HOH A 60 560 24 HOH HOH . C 3 HOH A 61 561 38 HOH HOH . C 3 HOH A 62 562 25 HOH HOH . C 3 HOH A 63 563 21 HOH HOH . C 3 HOH A 64 564 10 HOH HOH . C 3 HOH A 65 565 60 HOH HOH . C 3 HOH A 66 566 33 HOH HOH . C 3 HOH A 67 567 30 HOH HOH . C 3 HOH A 68 568 40 HOH HOH . C 3 HOH A 69 569 28 HOH HOH . C 3 HOH A 70 570 54 HOH HOH . C 3 HOH A 71 571 56 HOH HOH . C 3 HOH A 72 572 23 HOH HOH . C 3 HOH A 73 573 14 HOH HOH . C 3 HOH A 74 574 39 HOH HOH . C 3 HOH A 75 575 59 HOH HOH . C 3 HOH A 76 576 17 HOH HOH . C 3 HOH A 77 577 58 HOH HOH . C 3 HOH A 78 578 51 HOH HOH . C 3 HOH A 79 579 45 HOH HOH . C 3 HOH A 80 580 28 HOH HOH . C 3 HOH A 81 581 12 HOH HOH . C 3 HOH A 82 582 13 HOH HOH . C 3 HOH A 83 583 35 HOH HOH . C 3 HOH A 84 584 1 HOH HOH . C 3 HOH A 85 585 22 HOH HOH . C 3 HOH A 86 586 46 HOH HOH . C 3 HOH A 87 587 57 HOH HOH . C 3 HOH A 88 588 41 HOH HOH . C 3 HOH A 89 589 9 HOH HOH . C 3 HOH A 90 590 38 HOH HOH . C 3 HOH A 91 591 29 HOH HOH . C 3 HOH A 92 592 4 HOH HOH . C 3 HOH A 93 593 27 HOH HOH . C 3 HOH A 94 594 2 HOH HOH . C 3 HOH A 95 595 3 HOH HOH . C 3 HOH A 96 596 24 HOH HOH . C 3 HOH A 97 597 42 HOH HOH . C 3 HOH A 98 598 31 HOH HOH . C 3 HOH A 99 599 55 HOH HOH . C 3 HOH A 100 600 37 HOH HOH . C 3 HOH A 101 601 32 HOH HOH . C 3 HOH A 102 602 33 HOH HOH . C 3 HOH A 103 603 11 HOH HOH . C 3 HOH A 104 604 43 HOH HOH . C 3 HOH A 105 605 44 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 VHP . . . B 2 44.507 10.094 -17.242 1 103.06 ? C1 VHP 401 A 1 HETATM 2 C C10 VHP . . . B 2 44.93 7.137 -12.351 1 89.84 ? C10 VHP 401 A 1 HETATM 3 C C11 VHP . . . B 2 42.581 4.129 -15.005 1 92.05 ? C11 VHP 401 A 1 HETATM 4 C C12 VHP . . . B 2 41.821 2.893 -14.703 1 89.35 ? C12 VHP 401 A 1 HETATM 5 C C13 VHP . . . B 2 42.502 6.642 -11.909 1 90.87 ? C13 VHP 401 A 1 HETATM 6 C C14 VHP . . . B 2 41.521 0.604 -15.157 1 88.32 ? C14 VHP 401 A 1 HETATM 7 C C15 VHP . . . B 2 41.958 0.068 -13.816 1 91.98 ? C15 VHP 401 A 1 HETATM 8 C C16 VHP . . . B 2 43.119 8.218 -13.773 1 92.45 ? C16 VHP 401 A 1 HETATM 9 C C17 VHP . . . B 2 41.029 -0.642 -11.605 1 84.95 ? C17 VHP 401 A 1 HETATM 10 C C18 VHP . . . B 2 43.923 3.715 -12.962 1 91.73 ? C18 VHP 401 A 1 HETATM 11 C C19 VHP . . . B 2 39.876 0.08 -10.895 1 77.7 ? C19 VHP 401 A 1 HETATM 12 C C2 VHP . . . B 2 43.162 10.105 -16.883 1 103.85 ? C2 VHP 401 A 1 HETATM 13 C C20 VHP . . . B 2 40.145 1.581 -10.892 1 79.16 ? C20 VHP 401 A 1 HETATM 14 C C21 VHP . . . B 2 41.438 1.845 -10.123 1 83.06 ? C21 VHP 401 A 1 HETATM 15 C C22 VHP . . . B 2 41.082 2.5 -8.784 1 80.58 ? C22 VHP 401 A 1 HETATM 16 C C24 VHP . . . B 2 39.129 2.361 -10.126 1 76.72 ? C24 VHP 401 A 1 HETATM 17 C C27 VHP . . . B 2 40.761 -2.145 -11.704 1 79.27 ? C27 VHP 401 A 1 HETATM 18 C C3 VHP . . . B 2 42.286 9.16 -17.396 1 100.01 ? C3 VHP 401 A 1 HETATM 19 C C30 VHP . . . B 2 42.968 4.695 -13.653 1 88.51 ? C30 VHP 401 A 1 HETATM 20 C C34 VHP . . . B 2 41.891 -0.247 -16.363 1 89.15 ? C34 VHP 401 A 1 HETATM 21 C C35 VHP . . . B 2 41.334 0.251 -17.702 1 87.26 ? C35 VHP 401 A 1 HETATM 22 C C36 VHP . . . B 2 41.513 -0.797 -18.779 1 89.95 ? C36 VHP 401 A 1 HETATM 23 C C37 VHP . . . B 2 39.846 0.436 -17.682 1 74.49 ? C37 VHP 401 A 1 HETATM 24 C C4 VHP . . . B 2 42.759 8.203 -18.278 1 100.51 ? C4 VHP 401 A 1 HETATM 25 C C5 VHP . . . B 2 44.112 8.182 -18.622 1 99.1 ? C5 VHP 401 A 1 HETATM 26 C C6 VHP . . . B 2 44.997 9.129 -18.115 1 92.37 ? C6 VHP 401 A 1 HETATM 27 C C7 VHP . . . B 2 41.796 7.169 -18.817 1 91.87 ? C7 VHP 401 A 1 HETATM 28 C C8 VHP . . . B 2 43.535 6.985 -12.979 1 96.12 ? C8 VHP 401 A 1 HETATM 29 C C9 VHP . . . B 2 42.212 5.596 -16.928 1 91.47 ? C9 VHP 401 A 1 HETATM 30 N N10 VHP . . . B 2 41.755 4.997 -15.833 1 89.14 ? N10 VHP 401 A 1 HETATM 31 N N13 VHP . . . B 2 42.214 1.841 -15.399 1 89.6 ? N13 VHP 401 A 1 HETATM 32 N N16 VHP . . . B 2 40.932 -0.148 -12.981 1 86.91 ? N16 VHP 401 A 1 HETATM 33 N N23 VHP . . . B 2 39.691 2.842 -9.026 1 83.64 ? N23 VHP 401 A 1 HETATM 34 O O26 VHP . . . B 2 37.981 2.531 -10.494 1 76.58 ? O26 VHP 401 A 1 HETATM 35 O O28 VHP . . . B 2 40.554 -2.76 -10.426 1 79.66 ? O28 VHP 401 A 1 HETATM 36 O O29 VHP . . . B 2 43.376 5.481 -17.287 1 96.92 ? O29 VHP 401 A 1 HETATM 37 O O32 VHP . . . B 2 43.62 5.924 -13.912 1 94.1 ? O32 VHP 401 A 1 HETATM 38 O O33 VHP . . . B 2 40.922 2.897 -13.87 1 84.22 ? O33 VHP 401 A 1 HETATM 39 O O38 VHP . . . B 2 43.145 -0.102 -13.542 1 91.77 ? O38 VHP 401 A 1 HETATM 40 O O8 VHP . . . B 2 41.303 6.426 -17.708 1 93.56 ? O8 VHP 401 A 1 # _model_server_stats.io_time_ms 59 _model_server_stats.parse_time_ms 25 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 263 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 40 #