data_7JQE # _model_server_result.job_id wh1e7L0JPoSIAUqRRtg9Pg _model_server_result.datetime_utc '2024-11-04 20:48:57' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7jqe # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":702}' # _entry.id 7JQE # _exptl.entry_id 7JQE _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 62.068 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 1,2-ETHANEDIOL _entity.pdbx_number_of_molecules 23 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 7JQE _cell.length_a 74.466 _cell.length_b 248.235 _cell.length_c 81.095 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7JQE _symmetry.cell_setting ? _symmetry.Int_Tables_number 20 _symmetry.space_group_name_Hall 'C 2c 2' _symmetry.space_group_name_H-M 'C 2 2 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 3_756 -x+2,y,-z+3/2 -1 0 0 0 1 0 0 0 -1 148.932 0 121.6425 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 C N N ? 3 D N N ? 3 E N N ? 3 F N N ? 3 G N N ? 3 H N N ? 3 I N N ? 3 J N N ? 3 K N N ? 3 L N N ? 3 M N N ? 3 N N N ? 3 O N N ? 3 P N N ? 3 Q N N ? 3 R N N ? 3 S N N ? 3 T N N ? 3 U N N ? 3 V N N ? 3 W N N ? 3 X N N ? 3 Y N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A C LEU 199 A LEU 199 1_555 A N MSE 200 A MSE 200 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? covale ? covale2 A C MSE 200 A MSE 200 1_555 A N GLY 201 A GLY 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.336 ? covale ? covale3 A C GLU 219 A GLU 219 1_555 A N MSE 220 A MSE 220 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? covale ? covale4 A C MSE 220 A MSE 220 1_555 A N GLY 221 A GLY 221 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.333 ? covale ? covale5 A C ALA 222 A ALA 222 1_555 A N MSE 223 A MSE 223 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? covale ? covale6 A C MSE 223 A MSE 223 1_555 A N THR 224 A THR 224 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? covale ? covale7 A C PRO 385 A PRO 385 1_555 A N MSE 386 A MSE 386 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? covale ? covale8 A C MSE 386 A MSE 386 1_555 A N THR 387 A THR 387 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.332 ? covale ? covale9 A C ALA 421 A ALA 421 1_555 A N MSE 422 A MSE 422 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? covale ? covale10 A C MSE 422 A MSE 422 1_555 A N ILE 423 A ILE 423 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.333 ? covale ? covale11 A C ASN 450 A ASN 450 1_555 A N MSE 451 A MSE 451 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.334 ? covale ? covale12 A C MSE 451 A MSE 451 1_555 A N TYR 452 A TYR 452 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? # _chem_comp.formula 'C2 H6 O2' _chem_comp.formula_weight 62.068 _chem_comp.id EDO _chem_comp.mon_nstd_flag . _chem_comp.name 1,2-ETHANEDIOL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'ETHYLENE GLYCOL' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 EDO sing 70 n n C1 C2 EDO sing 71 n n C1 H11 EDO sing 72 n n C1 H12 EDO sing 73 n n O1 HO1 EDO sing 74 n n C2 O2 EDO sing 75 n n C2 H21 EDO sing 76 n n C2 H22 EDO sing 77 n n O2 HO2 EDO sing 78 n n # _atom_sites.entry_id 7JQE _atom_sites.fract_transf_matrix[1][1] 0.013429 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.004028 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.012331 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 CL A 1 701 603 CL CL . C 3 EDO A 1 702 701 EDO EDO . D 3 EDO A 1 703 901 EDO EDO . E 3 EDO A 1 704 1101 EDO EDO . F 3 EDO A 1 705 1401 EDO EDO . G 3 EDO A 1 706 1601 EDO EDO . H 3 EDO A 1 707 1701 EDO EDO . I 3 EDO A 1 708 1801 EDO EDO . J 3 EDO A 1 709 1901 EDO EDO . K 3 EDO A 1 710 2001 EDO EDO . L 3 EDO A 1 711 2201 EDO EDO . M 3 EDO A 1 712 2301 EDO EDO . N 3 EDO A 1 713 2601 EDO EDO . O 3 EDO A 1 714 2701 EDO EDO . P 3 EDO A 1 715 3201 EDO EDO . Q 3 EDO A 1 716 3301 EDO EDO . R 3 EDO A 1 717 3401 EDO EDO . S 3 EDO A 1 718 3601 EDO EDO . T 3 EDO A 1 719 3801 EDO EDO . U 3 EDO A 1 720 3901 EDO EDO . V 3 EDO A 1 721 4001 EDO EDO . W 3 EDO A 1 722 4201 EDO EDO . X 3 EDO A 1 723 4701 EDO EDO . Y 3 EDO A 1 724 4901 EDO EDO . Z 4 HOH A 1 801 1 HOH HOH . Z 4 HOH A 2 802 17 HOH HOH . Z 4 HOH A 3 803 22 HOH HOH . Z 4 HOH A 4 804 2 HOH HOH . Z 4 HOH A 5 805 9 HOH HOH . Z 4 HOH A 6 806 13 HOH HOH . Z 4 HOH A 7 807 16 HOH HOH . Z 4 HOH A 8 808 12 HOH HOH . Z 4 HOH A 9 809 15 HOH HOH . Z 4 HOH A 10 810 21 HOH HOH . Z 4 HOH A 11 811 8 HOH HOH . Z 4 HOH A 12 812 4 HOH HOH . Z 4 HOH A 13 813 19 HOH HOH . Z 4 HOH A 14 814 14 HOH HOH . Z 4 HOH A 15 815 11 HOH HOH . Z 4 HOH A 16 816 23 HOH HOH . Z 4 HOH A 17 817 28 HOH HOH . Z 4 HOH A 18 818 27 HOH HOH . Z 4 HOH A 19 819 10 HOH HOH . Z 4 HOH A 20 820 18 HOH HOH . Z 4 HOH A 21 821 20 HOH HOH . Z 4 HOH A 22 822 3 HOH HOH . Z 4 HOH A 23 823 24 HOH HOH . Z 4 HOH A 24 824 6 HOH HOH . Z 4 HOH A 25 825 5 HOH HOH . Z 4 HOH A 26 826 7 HOH HOH . Z 4 HOH A 27 827 26 HOH HOH . Z 4 HOH A 28 828 25 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 EDO . . . C 3 66.1 24.107 62.034 1 67.25 ? C1 EDO 702 A 1 HETATM 2 O O1 EDO . . . C 3 67.52 24.228 62.2 1 56.34 ? O1 EDO 702 A 1 HETATM 3 C C2 EDO . . . C 3 65.786 23.433 60.7 1 78.83 ? C2 EDO 702 A 1 HETATM 4 O O2 EDO . . . C 3 66.446 22.16 60.626 1 73.67 ? O2 EDO 702 A 1 HETATM 5 H H11 EDO . . . C 3 65.64 25.097 62.064 1 80.76 ? H11 EDO 702 A 1 HETATM 6 H H12 EDO . . . C 3 65.682 23.517 62.852 1 80.76 ? H12 EDO 702 A 1 HETATM 7 H HO1 EDO . . . C 3 67.711 24.633 63.056 1 67.66 ? HO1 EDO 702 A 1 HETATM 8 H H21 EDO . . . C 3 66.12 24.07 59.878 1 94.65 ? H21 EDO 702 A 1 HETATM 9 H H22 EDO . . . C 3 64.707 23.296 60.601 1 94.65 ? H22 EDO 702 A 1 HETATM 10 H HO2 EDO . . . C 3 66.344 21.796 59.737 1 88.45 ? HO2 EDO 702 A 1 # _model_server_stats.io_time_ms 64 _model_server_stats.parse_time_ms 13 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 303 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 10 #