data_7JQI # _model_server_result.job_id 05kjqym-fDGAANGCrS9MyQ _model_server_result.datetime_utc '2024-12-26 16:56:32' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7jqi # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":401}' # _entry.id 7JQI # _exptl.entry_id 7JQI _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 146.098 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '2-OXOGLUTARIC ACID' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 7JQI _cell.length_a 158.887 _cell.length_b 158.887 _cell.length_c 96.091 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7JQI _symmetry.cell_setting ? _symmetry.Int_Tables_number 179 _symmetry.space_group_name_Hall 'P 65 2 (x,y,z+1/12)' _symmetry.space_group_name_H-M 'P 65 2 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 12_564 x,x-y+1,-z-1/6 0.5 0.866025 0 0.866025 -0.5 0 0 0 -1 -79.4435 137.600178 -16.015167 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C5 H6 O5' _chem_comp.formula_weight 146.098 _chem_comp.id AKG _chem_comp.mon_nstd_flag . _chem_comp.name '2-OXOGLUTARIC ACID' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 AKG doub 1 n n C1 O2 AKG sing 2 n n C1 C2 AKG sing 3 n n O2 HO2 AKG sing 4 n n C2 O5 AKG doub 5 n n C2 C3 AKG sing 6 n n C3 C4 AKG sing 7 n n C3 H31 AKG sing 8 n n C3 H32 AKG sing 9 n n C4 C5 AKG sing 10 n n C4 H41 AKG sing 11 n n C4 H42 AKG sing 12 n n C5 O3 AKG doub 13 n n C5 O4 AKG sing 14 n n O4 HO4 AKG sing 15 n n # _atom_sites.entry_id 7JQI _atom_sites.fract_transf_matrix[1][1] 0.006294 _atom_sites.fract_transf_matrix[1][2] 0.003634 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.007267 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.010407 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 AKG A 1 401 1 AKG LIG . C 3 NAP A 1 402 1 NAP NAP . D 4 HOH A 1 501 91 HOH HOH . D 4 HOH A 2 502 58 HOH HOH . D 4 HOH A 3 503 109 HOH HOH . D 4 HOH A 4 504 205 HOH HOH . D 4 HOH A 5 505 80 HOH HOH . D 4 HOH A 6 506 110 HOH HOH . D 4 HOH A 7 507 148 HOH HOH . D 4 HOH A 8 508 192 HOH HOH . D 4 HOH A 9 509 142 HOH HOH . D 4 HOH A 10 510 35 HOH HOH . D 4 HOH A 11 511 9 HOH HOH . D 4 HOH A 12 512 45 HOH HOH . D 4 HOH A 13 513 181 HOH HOH . D 4 HOH A 14 514 153 HOH HOH . D 4 HOH A 15 515 149 HOH HOH . D 4 HOH A 16 516 212 HOH HOH . D 4 HOH A 17 517 16 HOH HOH . D 4 HOH A 18 518 20 HOH HOH . D 4 HOH A 19 519 117 HOH HOH . D 4 HOH A 20 520 6 HOH HOH . D 4 HOH A 21 521 14 HOH HOH . D 4 HOH A 22 522 8 HOH HOH . D 4 HOH A 23 523 7 HOH HOH . D 4 HOH A 24 524 128 HOH HOH . D 4 HOH A 25 525 3 HOH HOH . D 4 HOH A 26 526 66 HOH HOH . D 4 HOH A 27 527 114 HOH HOH . D 4 HOH A 28 528 180 HOH HOH . D 4 HOH A 29 529 130 HOH HOH . D 4 HOH A 30 530 2 HOH HOH . D 4 HOH A 31 531 113 HOH HOH . D 4 HOH A 32 532 86 HOH HOH . D 4 HOH A 33 533 160 HOH HOH . D 4 HOH A 34 534 65 HOH HOH . D 4 HOH A 35 535 129 HOH HOH . D 4 HOH A 36 536 48 HOH HOH . D 4 HOH A 37 537 111 HOH HOH . D 4 HOH A 38 538 17 HOH HOH . D 4 HOH A 39 539 57 HOH HOH . D 4 HOH A 40 540 94 HOH HOH . D 4 HOH A 41 541 175 HOH HOH . D 4 HOH A 42 542 23 HOH HOH . D 4 HOH A 43 543 44 HOH HOH . D 4 HOH A 44 544 85 HOH HOH . D 4 HOH A 45 545 10 HOH HOH . D 4 HOH A 46 546 29 HOH HOH . D 4 HOH A 47 547 54 HOH HOH . D 4 HOH A 48 548 15 HOH HOH . D 4 HOH A 49 549 76 HOH HOH . D 4 HOH A 50 550 77 HOH HOH . D 4 HOH A 51 551 36 HOH HOH . D 4 HOH A 52 552 178 HOH HOH . D 4 HOH A 53 553 40 HOH HOH . D 4 HOH A 54 554 11 HOH HOH . D 4 HOH A 55 555 79 HOH HOH . D 4 HOH A 56 556 5 HOH HOH . D 4 HOH A 57 557 145 HOH HOH . D 4 HOH A 58 558 169 HOH HOH . D 4 HOH A 59 559 67 HOH HOH . D 4 HOH A 60 560 73 HOH HOH . D 4 HOH A 61 561 4 HOH HOH . D 4 HOH A 62 562 95 HOH HOH . D 4 HOH A 63 563 61 HOH HOH . D 4 HOH A 64 564 28 HOH HOH . D 4 HOH A 65 565 121 HOH HOH . D 4 HOH A 66 566 51 HOH HOH . D 4 HOH A 67 567 12 HOH HOH . D 4 HOH A 68 568 210 HOH HOH . D 4 HOH A 69 569 103 HOH HOH . D 4 HOH A 70 570 92 HOH HOH . D 4 HOH A 71 571 162 HOH HOH . D 4 HOH A 72 572 68 HOH HOH . D 4 HOH A 73 573 132 HOH HOH . D 4 HOH A 74 574 13 HOH HOH . D 4 HOH A 75 575 19 HOH HOH . D 4 HOH A 76 576 55 HOH HOH . D 4 HOH A 77 577 139 HOH HOH . D 4 HOH A 78 578 93 HOH HOH . D 4 HOH A 79 579 101 HOH HOH . D 4 HOH A 80 580 119 HOH HOH . D 4 HOH A 81 581 26 HOH HOH . D 4 HOH A 82 582 24 HOH HOH . D 4 HOH A 83 583 122 HOH HOH . D 4 HOH A 84 584 21 HOH HOH . D 4 HOH A 85 585 31 HOH HOH . D 4 HOH A 86 586 144 HOH HOH . D 4 HOH A 87 587 75 HOH HOH . D 4 HOH A 88 588 84 HOH HOH . D 4 HOH A 89 589 83 HOH HOH . D 4 HOH A 90 590 108 HOH HOH . D 4 HOH A 91 591 179 HOH HOH . D 4 HOH A 92 592 90 HOH HOH . D 4 HOH A 93 593 105 HOH HOH . D 4 HOH A 94 594 155 HOH HOH . D 4 HOH A 95 595 198 HOH HOH . D 4 HOH A 96 596 1 HOH HOH . D 4 HOH A 97 597 167 HOH HOH . D 4 HOH A 98 598 217 HOH HOH . D 4 HOH A 99 599 49 HOH HOH . D 4 HOH A 100 600 165 HOH HOH . D 4 HOH A 101 601 135 HOH HOH . D 4 HOH A 102 602 63 HOH HOH . D 4 HOH A 103 603 41 HOH HOH . D 4 HOH A 104 604 123 HOH HOH . D 4 HOH A 105 605 102 HOH HOH . D 4 HOH A 106 606 131 HOH HOH . D 4 HOH A 107 607 25 HOH HOH . D 4 HOH A 108 608 27 HOH HOH . D 4 HOH A 109 609 106 HOH HOH . D 4 HOH A 110 610 156 HOH HOH . D 4 HOH A 111 611 47 HOH HOH . D 4 HOH A 112 612 136 HOH HOH . D 4 HOH A 113 613 62 HOH HOH . D 4 HOH A 114 614 56 HOH HOH . D 4 HOH A 115 615 147 HOH HOH . D 4 HOH A 116 616 32 HOH HOH . D 4 HOH A 117 617 157 HOH HOH . D 4 HOH A 118 618 141 HOH HOH . D 4 HOH A 119 619 171 HOH HOH . D 4 HOH A 120 620 133 HOH HOH . D 4 HOH A 121 621 37 HOH HOH . D 4 HOH A 122 622 43 HOH HOH . D 4 HOH A 123 623 71 HOH HOH . D 4 HOH A 124 624 30 HOH HOH . D 4 HOH A 125 625 194 HOH HOH . D 4 HOH A 126 626 118 HOH HOH . D 4 HOH A 127 627 137 HOH HOH . D 4 HOH A 128 628 158 HOH HOH . D 4 HOH A 129 629 97 HOH HOH . D 4 HOH A 130 630 200 HOH HOH . D 4 HOH A 131 631 190 HOH HOH . D 4 HOH A 132 632 116 HOH HOH . D 4 HOH A 133 633 70 HOH HOH . D 4 HOH A 134 634 201 HOH HOH . D 4 HOH A 135 635 96 HOH HOH . D 4 HOH A 136 636 99 HOH HOH . D 4 HOH A 137 637 174 HOH HOH . D 4 HOH A 138 638 152 HOH HOH . D 4 HOH A 139 639 39 HOH HOH . D 4 HOH A 140 640 151 HOH HOH . D 4 HOH A 141 641 182 HOH HOH . D 4 HOH A 142 642 107 HOH HOH . D 4 HOH A 143 643 204 HOH HOH . D 4 HOH A 144 644 203 HOH HOH . D 4 HOH A 145 645 120 HOH HOH . D 4 HOH A 146 646 143 HOH HOH . D 4 HOH A 147 647 186 HOH HOH . D 4 HOH A 148 648 50 HOH HOH . D 4 HOH A 149 649 72 HOH HOH . D 4 HOH A 150 650 163 HOH HOH . D 4 HOH A 151 651 42 HOH HOH . D 4 HOH A 152 652 81 HOH HOH . D 4 HOH A 153 653 138 HOH HOH . D 4 HOH A 154 654 104 HOH HOH . D 4 HOH A 155 655 185 HOH HOH . D 4 HOH A 156 656 33 HOH HOH . D 4 HOH A 157 657 199 HOH HOH . D 4 HOH A 158 658 124 HOH HOH . D 4 HOH A 159 659 22 HOH HOH . D 4 HOH A 160 660 82 HOH HOH . D 4 HOH A 161 661 159 HOH HOH . D 4 HOH A 162 662 216 HOH HOH . D 4 HOH A 163 663 176 HOH HOH . D 4 HOH A 164 664 87 HOH HOH . D 4 HOH A 165 665 146 HOH HOH . D 4 HOH A 166 666 195 HOH HOH . D 4 HOH A 167 667 46 HOH HOH . D 4 HOH A 168 668 74 HOH HOH . D 4 HOH A 169 669 89 HOH HOH . D 4 HOH A 170 670 183 HOH HOH . D 4 HOH A 171 671 59 HOH HOH . D 4 HOH A 172 672 88 HOH HOH . D 4 HOH A 173 673 100 HOH HOH . D 4 HOH A 174 674 168 HOH HOH . D 4 HOH A 175 675 172 HOH HOH . D 4 HOH A 176 676 214 HOH HOH . D 4 HOH A 177 677 78 HOH HOH . D 4 HOH A 178 678 140 HOH HOH . D 4 HOH A 179 679 187 HOH HOH . D 4 HOH A 180 680 60 HOH HOH . D 4 HOH A 181 681 127 HOH HOH . D 4 HOH A 182 682 208 HOH HOH . D 4 HOH A 183 683 211 HOH HOH . D 4 HOH A 184 684 188 HOH HOH . D 4 HOH A 185 685 207 HOH HOH . D 4 HOH A 186 686 125 HOH HOH . D 4 HOH A 187 687 206 HOH HOH . D 4 HOH A 188 688 115 HOH HOH . D 4 HOH A 189 689 64 HOH HOH . D 4 HOH A 190 690 215 HOH HOH . D 4 HOH A 191 691 38 HOH HOH . D 4 HOH A 192 692 161 HOH HOH . D 4 HOH A 193 693 193 HOH HOH . D 4 HOH A 194 694 209 HOH HOH . D 4 HOH A 195 695 202 HOH HOH . D 4 HOH A 196 696 98 HOH HOH . D 4 HOH A 197 697 196 HOH HOH . D 4 HOH A 198 698 177 HOH HOH . D 4 HOH A 199 699 189 HOH HOH . D 4 HOH A 200 700 184 HOH HOH . D 4 HOH A 201 701 191 HOH HOH . D 4 HOH A 202 702 112 HOH HOH . D 4 HOH A 203 703 170 HOH HOH . D 4 HOH A 204 704 34 HOH HOH . D 4 HOH A 205 705 134 HOH HOH . D 4 HOH A 206 706 154 HOH HOH . D 4 HOH A 207 707 213 HOH HOH . D 4 HOH A 208 708 197 HOH HOH . D 4 HOH A 209 709 126 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 AKG . . . B 2 -19.558 64.538 -25.167 1 37.63 ? C1 AKG 401 A 1 HETATM 2 O O1 AKG . . . B 2 -19.131 65.63 -25.619 1 34.4 -1 O1 AKG 401 A 1 HETATM 3 O O2 AKG . . . B 2 -18.765 63.56 -25.048 1 33.15 ? O2 AKG 401 A 1 HETATM 4 C C2 AKG . . . B 2 -21.023 64.446 -24.734 1 39.52 ? C2 AKG 401 A 1 HETATM 5 O O5 AKG . . . B 2 -21.375 63.608 -23.97 1 35.9 ? O5 AKG 401 A 1 HETATM 6 C C3 AKG . . . B 2 -22.032 65.453 -25.29 1 44.37 ? C3 AKG 401 A 1 HETATM 7 C C4 AKG . . . B 2 -22.447 65.076 -26.713 1 82.23 ? C4 AKG 401 A 1 HETATM 8 C C5 AKG . . . B 2 -23.073 63.684 -26.793 1 82.62 ? C5 AKG 401 A 1 HETATM 9 O O3 AKG . . . B 2 -24.308 63.57 -27.001 1 95.26 ? O3 AKG 401 A 1 HETATM 10 O O4 AKG . . . B 2 -22.364 62.645 -26.66 1 81.18 -1 O4 AKG 401 A 1 HETATM 11 H H31 AKG . . . B 2 -22.818 65.467 -24.72 1 53.25 ? H31 AKG 401 A 1 HETATM 12 H H32 AKG . . . B 2 -21.633 66.337 -25.296 1 53.25 ? H32 AKG 401 A 1 HETATM 13 H H41 AKG . . . B 2 -21.663 65.1 -27.284 1 98.68 ? H41 AKG 401 A 1 HETATM 14 H H42 AKG . . . B 2 -23.09 65.727 -27.034 1 98.68 ? H42 AKG 401 A 1 # _model_server_stats.io_time_ms 17 _model_server_stats.parse_time_ms 15 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 329 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 14 #