data_7JRH # _model_server_result.job_id YnTJlRAdEhfTXZjQT7NWrg _model_server_result.datetime_utc '2024-10-10 05:23:52' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7jrh # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":101}' # _entry.id 7JRH # _exptl.entry_id 7JRH _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 40.078 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'CALCIUM ION' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 7JRH _cell.length_a 42.486 _cell.length_b 42.486 _cell.length_c 42.486 _cell.Z_PDB 24 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7JRH _symmetry.cell_setting ? _symmetry.Int_Tables_number 197 _symmetry.space_group_name_Hall 'I 2 2 3' _symmetry.space_group_name_H-M 'I 2 3' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dodecameric _pdbx_struct_assembly.oligomeric_count 12 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2,3,4,5,6,7,8,9,10,11,12 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_645 -x+1,-y-1,z -1 0 0 0 -1 0 0 0 1 42.486 -42.486 0 3 'crystal symmetry operation' 3_654 -x+1,y,-z-1 -1 0 0 0 1 0 0 0 -1 42.486 0 -42.486 4 'crystal symmetry operation' 4_544 x,-y-1,-z-1 1 0 0 0 -1 0 0 0 -1 0 -42.486 -42.486 5 'crystal symmetry operation' 5_645 z+1,x-1,y 0 0 1 1 0 0 0 1 0 42.486 -42.486 0 6 'crystal symmetry operation' 6_654 z+1,-x,-y-1 0 0 1 -1 0 0 0 -1 0 42.486 0 -42.486 7 'crystal symmetry operation' 7_555 -z,-x,y 0 0 -1 -1 0 0 0 1 0 0 0 0 8 'crystal symmetry operation' 8_544 -z,x-1,-y-1 0 0 -1 1 0 0 0 -1 0 0 -42.486 -42.486 9 'crystal symmetry operation' 9_654 y+1,z,x-1 0 1 0 0 0 1 1 0 0 42.486 0 -42.486 10 'crystal symmetry operation' 10_555 -y,z,-x 0 -1 0 0 0 1 -1 0 0 0 0 0 11 'crystal symmetry operation' 11_645 y+1,-z-1,-x 0 1 0 0 0 -1 -1 0 0 42.486 -42.486 0 12 'crystal symmetry operation' 12_544 -y,-z-1,x-1 0 -1 0 0 0 -1 1 0 0 0 -42.486 -42.486 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 B N N ? 2 C N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A N ASP 1 A ASP 1 1_555 A C ORN 16 A ORN 16 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.429 ? covale ? covale2 A C TRP 3 A TRP 3 1_555 A N MLE 4 A MLE 4 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.323 ? covale ? covale3 A C MLE 4 A MLE 4 1_555 A N GLN 5 A GLN 5 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.326 ? covale ? covale4 A C ASP 7 A ASP 7 1_555 A NE ORN 8 A ORN 8 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.377 ? covale ? covale5 A C ORN 8 A ORN 8 1_555 A N GLU 9 A GLU 9 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.37 ? covale ? covale6 A C THR 15 A THR 15 1_555 A NE ORN 16 A ORN 16 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.373 ? metalc ? metalc1 A OD1 ASP 1 A ASP 1 1_555 C CA CA . A CA 102 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.517 ? metalc ? metalc2 A OD2 ASP 1 A ASP 1 1_555 C CA CA . A CA 102 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.229 ? metalc ? metalc3 A OD1 ASP 1 A ASP 1 1_555 C CA CA . A CA 102 6_654 ? ? ? ? ? ? ? ? ? ? ? ? 2.517 ? metalc ? metalc4 A OD2 ASP 1 A ASP 1 1_555 C CA CA . A CA 102 6_654 ? ? ? ? ? ? ? ? ? ? ? ? 2.229 ? metalc ? metalc5 A OD1 ASP 7 A ASP 7 1_555 B CA CA . A CA 101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.268 ? metalc ? metalc6 A OD1 ASP 7 A ASP 7 1_555 B CA CA . A CA 101 7_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.268 ? metalc ? metalc7 B CA CA . A CA 101 1_555 D O HOH . A HOH 210 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.35 ? metalc ? metalc8 B CA CA . A CA 101 1_555 D O HOH . A HOH 210 7_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.35 ? metalc ? metalc9 C CA CA . A CA 102 1_555 D O HOH . A HOH 209 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.462 ? metalc ? metalc10 C CA CA . A CA 102 1_555 D O HOH . A HOH 209 6_654 ? ? ? ? ? ? ? ? ? ? ? ? 2.462 ? # _chem_comp.formula 'Ca 2' _chem_comp.formula_weight 40.078 _chem_comp.id CA _chem_comp.mon_nstd_flag . _chem_comp.name 'CALCIUM ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 7JRH _atom_sites.fract_transf_matrix[1][1] 0.023537 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.023537 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.023537 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 CA A 1 101 1 CA CA . C 2 CA A 1 102 2 CA CA . D 3 HOH A 1 201 9 HOH HOH . D 3 HOH A 2 202 7 HOH HOH . D 3 HOH A 3 203 6 HOH HOH . D 3 HOH A 4 204 4 HOH HOH . D 3 HOH A 5 205 5 HOH HOH . D 3 HOH A 6 206 3 HOH HOH . D 3 HOH A 7 207 10 HOH HOH . D 3 HOH A 8 208 8 HOH HOH . D 3 HOH A 9 209 1 HOH HOH . D 3 HOH A 10 210 11 HOH HOH . D 3 HOH A 11 211 2 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol CA _atom_site.label_atom_id CA _atom_site.label_comp_id CA _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id B _atom_site.label_entity_id 2 _atom_site.Cartn_x 6.107 _atom_site.Cartn_y -6.107 _atom_site.Cartn_z -6.107 _atom_site.occupancy 0.33 _atom_site.B_iso_or_equiv 17.39 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id CA _atom_site.auth_comp_id CA _atom_site.auth_seq_id 101 _atom_site.auth_asym_id A _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 10 _model_server_stats.parse_time_ms 26 _model_server_stats.create_model_time_ms 1 _model_server_stats.query_time_ms 264 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 1 #