data_7JS5 # _model_server_result.job_id L6Hwie1WCZp-4sUpxAQ2NA _model_server_result.datetime_utc '2025-07-16 18:54:14' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7js5 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":601}' # _entry.id 7JS5 # _exptl.entry_id 7JS5 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 258.12 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description D-MYO-INOSITOL-1-PHOSPHATE _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 7JS5 _cell.length_a 59.127 _cell.length_b 83.151 _cell.length_c 99.393 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7JS5 _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall 'P 2ac 2ab' _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 53 A CYS 53 1_555 A SG CYS 59 A CYS 59 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.07 ? disulf ? disulf2 A SG CYS 225 A CYS 225 1_555 A SG CYS 244 A CYS 244 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.063 ? disulf ? disulf3 A SG CYS 297 A CYS 297 1_555 A SG CYS 343 A CYS 343 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.011 ? disulf ? disulf4 A SG CYS 417 A CYS 417 1_555 A SG CYS 503 A CYS 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.067 ? # _chem_comp.formula 'C6 H11 O9 P -2' _chem_comp.formula_weight 258.12 _chem_comp.id IPD _chem_comp.mon_nstd_flag . _chem_comp.name D-MYO-INOSITOL-1-PHOSPHATE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 IPD sing 186 n n C1 C6 IPD sing 187 n n C1 O1 IPD sing 188 n n C1 H1 IPD sing 189 n n C2 C3 IPD sing 190 n n C2 O2 IPD sing 191 n n C2 H2 IPD sing 192 n n C3 C4 IPD sing 193 n n C3 O3 IPD sing 194 n n C3 H3 IPD sing 195 n n C4 C5 IPD sing 196 n n C4 O4 IPD sing 197 n n C4 H4 IPD sing 198 n n C5 C6 IPD sing 199 n n C5 O5 IPD sing 200 n n C5 H5 IPD sing 201 n n C6 O6 IPD sing 202 n n C6 H6 IPD sing 203 n n P1 O1 IPD sing 204 n n P1 O7 IPD doub 205 n n P1 O8 IPD sing 206 n n P1 O9 IPD sing 207 n n O2 HO2 IPD sing 208 n n O3 HO3 IPD sing 209 n n O4 HO4 IPD sing 210 n n O5 HO5 IPD sing 211 n n O6 HO6 IPD sing 212 n n # _atom_sites.entry_id 7JS5 _atom_sites.fract_transf_matrix[1][1] 0.016913 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.012026 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.010061 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 IPD A 1 601 601 IPD MIP . C 3 MES A 1 602 1 MES MES . D 4 GOL A 1 603 1 GOL GOL . E 5 HOH A 1 701 107 HOH HOH . E 5 HOH A 2 702 72 HOH HOH . E 5 HOH A 3 703 104 HOH HOH . E 5 HOH A 4 704 136 HOH HOH . E 5 HOH A 5 705 18 HOH HOH . E 5 HOH A 6 706 108 HOH HOH . E 5 HOH A 7 707 120 HOH HOH . E 5 HOH A 8 708 112 HOH HOH . E 5 HOH A 9 709 22 HOH HOH . E 5 HOH A 10 710 20 HOH HOH . E 5 HOH A 11 711 23 HOH HOH . E 5 HOH A 12 712 48 HOH HOH . E 5 HOH A 13 713 109 HOH HOH . E 5 HOH A 14 714 64 HOH HOH . E 5 HOH A 15 715 129 HOH HOH . E 5 HOH A 16 716 118 HOH HOH . E 5 HOH A 17 717 25 HOH HOH . E 5 HOH A 18 718 15 HOH HOH . E 5 HOH A 19 719 111 HOH HOH . E 5 HOH A 20 720 2 HOH HOH . E 5 HOH A 21 721 59 HOH HOH . E 5 HOH A 22 722 53 HOH HOH . E 5 HOH A 23 723 84 HOH HOH . E 5 HOH A 24 724 6 HOH HOH . E 5 HOH A 25 725 134 HOH HOH . E 5 HOH A 26 726 77 HOH HOH . E 5 HOH A 27 727 7 HOH HOH . E 5 HOH A 28 728 81 HOH HOH . E 5 HOH A 29 729 33 HOH HOH . E 5 HOH A 30 730 105 HOH HOH . E 5 HOH A 31 731 85 HOH HOH . E 5 HOH A 32 732 11 HOH HOH . E 5 HOH A 33 733 14 HOH HOH . E 5 HOH A 34 734 46 HOH HOH . E 5 HOH A 35 735 113 HOH HOH . E 5 HOH A 36 736 35 HOH HOH . E 5 HOH A 37 737 93 HOH HOH . E 5 HOH A 38 738 44 HOH HOH . E 5 HOH A 39 739 126 HOH HOH . E 5 HOH A 40 740 88 HOH HOH . E 5 HOH A 41 741 63 HOH HOH . E 5 HOH A 42 742 122 HOH HOH . E 5 HOH A 43 743 32 HOH HOH . E 5 HOH A 44 744 69 HOH HOH . E 5 HOH A 45 745 71 HOH HOH . E 5 HOH A 46 746 3 HOH HOH . E 5 HOH A 47 747 124 HOH HOH . E 5 HOH A 48 748 34 HOH HOH . E 5 HOH A 49 749 117 HOH HOH . E 5 HOH A 50 750 73 HOH HOH . E 5 HOH A 51 751 137 HOH HOH . E 5 HOH A 52 752 52 HOH HOH . E 5 HOH A 53 753 58 HOH HOH . E 5 HOH A 54 754 110 HOH HOH . E 5 HOH A 55 755 67 HOH HOH . E 5 HOH A 56 756 47 HOH HOH . E 5 HOH A 57 757 68 HOH HOH . E 5 HOH A 58 758 30 HOH HOH . E 5 HOH A 59 759 45 HOH HOH . E 5 HOH A 60 760 86 HOH HOH . E 5 HOH A 61 761 62 HOH HOH . E 5 HOH A 62 762 131 HOH HOH . E 5 HOH A 63 763 37 HOH HOH . E 5 HOH A 64 764 140 HOH HOH . E 5 HOH A 65 765 92 HOH HOH . E 5 HOH A 66 766 94 HOH HOH . E 5 HOH A 67 767 28 HOH HOH . E 5 HOH A 68 768 42 HOH HOH . E 5 HOH A 69 769 29 HOH HOH . E 5 HOH A 70 770 40 HOH HOH . E 5 HOH A 71 771 19 HOH HOH . E 5 HOH A 72 772 4 HOH HOH . E 5 HOH A 73 773 27 HOH HOH . E 5 HOH A 74 774 90 HOH HOH . E 5 HOH A 75 775 8 HOH HOH . E 5 HOH A 76 776 83 HOH HOH . E 5 HOH A 77 777 133 HOH HOH . E 5 HOH A 78 778 75 HOH HOH . E 5 HOH A 79 779 38 HOH HOH . E 5 HOH A 80 780 60 HOH HOH . E 5 HOH A 81 781 57 HOH HOH . E 5 HOH A 82 782 121 HOH HOH . E 5 HOH A 83 783 125 HOH HOH . E 5 HOH A 84 784 141 HOH HOH . E 5 HOH A 85 785 100 HOH HOH . E 5 HOH A 86 786 5 HOH HOH . E 5 HOH A 87 787 31 HOH HOH . E 5 HOH A 88 788 115 HOH HOH . E 5 HOH A 89 789 138 HOH HOH . E 5 HOH A 90 790 26 HOH HOH . E 5 HOH A 91 791 50 HOH HOH . E 5 HOH A 92 792 55 HOH HOH . E 5 HOH A 93 793 119 HOH HOH . E 5 HOH A 94 794 39 HOH HOH . E 5 HOH A 95 795 24 HOH HOH . E 5 HOH A 96 796 139 HOH HOH . E 5 HOH A 97 797 61 HOH HOH . E 5 HOH A 98 798 91 HOH HOH . E 5 HOH A 99 799 51 HOH HOH . E 5 HOH A 100 800 43 HOH HOH . E 5 HOH A 101 801 99 HOH HOH . E 5 HOH A 102 802 70 HOH HOH . E 5 HOH A 103 803 127 HOH HOH . E 5 HOH A 104 804 54 HOH HOH . E 5 HOH A 105 805 1 HOH HOH . E 5 HOH A 106 806 78 HOH HOH . E 5 HOH A 107 807 87 HOH HOH . E 5 HOH A 108 808 12 HOH HOH . E 5 HOH A 109 809 36 HOH HOH . E 5 HOH A 110 810 132 HOH HOH . E 5 HOH A 111 811 41 HOH HOH . E 5 HOH A 112 812 17 HOH HOH . E 5 HOH A 113 813 76 HOH HOH . E 5 HOH A 114 814 128 HOH HOH . E 5 HOH A 115 815 49 HOH HOH . E 5 HOH A 116 816 82 HOH HOH . E 5 HOH A 117 817 80 HOH HOH . E 5 HOH A 118 818 16 HOH HOH . E 5 HOH A 119 819 95 HOH HOH . E 5 HOH A 120 820 89 HOH HOH . E 5 HOH A 121 821 114 HOH HOH . E 5 HOH A 122 822 135 HOH HOH . E 5 HOH A 123 823 96 HOH HOH . E 5 HOH A 124 824 13 HOH HOH . E 5 HOH A 125 825 130 HOH HOH . E 5 HOH A 126 826 66 HOH HOH . E 5 HOH A 127 827 9 HOH HOH . E 5 HOH A 128 828 98 HOH HOH . E 5 HOH A 129 829 56 HOH HOH . E 5 HOH A 130 830 97 HOH HOH . E 5 HOH A 131 831 10 HOH HOH . E 5 HOH A 132 832 74 HOH HOH . E 5 HOH A 133 833 65 HOH HOH . E 5 HOH A 134 834 106 HOH HOH . E 5 HOH A 135 835 123 HOH HOH . E 5 HOH A 136 836 102 HOH HOH . E 5 HOH A 137 837 21 HOH HOH . E 5 HOH A 138 838 103 HOH HOH . E 5 HOH A 139 839 116 HOH HOH . E 5 HOH A 140 840 101 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 IPD . . . B 2 2.277 7.271 -20.412 0.85 54.44 ? C1 IPD 601 A 1 HETATM 2 C C2 IPD . . . B 2 1.35 6.685 -21.495 0.85 55.51 ? C2 IPD 601 A 1 HETATM 3 C C3 IPD . . . B 2 -0.053 7.281 -21.736 0.85 57.81 ? C3 IPD 601 A 1 HETATM 4 C C4 IPD . . . B 2 -0.27 8.713 -21.256 0.85 55.72 ? C4 IPD 601 A 1 HETATM 5 C C5 IPD . . . B 2 0.485 8.988 -19.955 0.85 57.57 ? C5 IPD 601 A 1 HETATM 6 C C6 IPD . . . B 2 1.988 8.748 -20.119 0.85 57.18 ? C6 IPD 601 A 1 HETATM 7 P P1 IPD . . . B 2 4.442 5.761 -20.155 0.85 35.34 ? P1 IPD 601 A 1 HETATM 8 O O1 IPD . . . B 2 3.611 7.024 -20.825 0.85 51.46 ? O1 IPD 601 A 1 HETATM 9 O O2 IPD . . . B 2 2.058 6.775 -22.725 0.85 55.72 ? O2 IPD 601 A 1 HETATM 10 O O3 IPD . . . B 2 -0.32 7.149 -23.122 0.85 58.34 ? O3 IPD 601 A 1 HETATM 11 O O4 IPD . . . B 2 -1.656 8.841 -21.046 0.85 59.67 ? O4 IPD 601 A 1 HETATM 12 O O5 IPD . . . B 2 0.198 10.328 -19.64 0.85 64.45 ? O5 IPD 601 A 1 HETATM 13 O O6 IPD . . . B 2 2.604 9.056 -18.892 0.85 55.39 ? O6 IPD 601 A 1 HETATM 14 O O7 IPD . . . B 2 4.537 4.596 -21.094 0.85 40.5 ? O7 IPD 601 A 1 HETATM 15 O O8 IPD . . . B 2 3.764 5.328 -18.877 0.85 37.08 -1 O8 IPD 601 A 1 HETATM 16 O O9 IPD . . . B 2 5.848 6.194 -19.914 0.85 36.54 -1 O9 IPD 601 A 1 HETATM 17 H H1 IPD . . . B 2 2.15 6.825 -19.56 0.85 65.31 ? H1 IPD 601 A 1 HETATM 18 H H2 IPD . . . B 2 1.163 5.786 -21.182 0.85 66.59 ? H2 IPD 601 A 1 HETATM 19 H H3 IPD . . . B 2 -0.695 6.772 -21.216 0.85 69.35 ? H3 IPD 601 A 1 HETATM 20 H H4 IPD . . . B 2 0.032 9.359 -21.912 0.85 66.84 ? H4 IPD 601 A 1 HETATM 21 H H5 IPD . . . B 2 0.199 8.416 -19.226 0.85 69.06 ? H5 IPD 601 A 1 HETATM 22 H H6 IPD . . . B 2 2.338 9.307 -20.831 0.85 68.59 ? H6 IPD 601 A 1 HETATM 23 H HO2 IPD . . . B 2 1.677 7.348 -23.238 0.85 66.84 ? HO2 IPD 601 A 1 HETATM 24 H HO3 IPD . . . B 2 -1.142 6.954 -23.238 0.85 69.98 ? HO3 IPD 601 A 1 HETATM 25 H HO4 IPD . . . B 2 -2.063 8.765 -21.791 0.85 71.58 ? HO4 IPD 601 A 1 HETATM 26 H HO5 IPD . . . B 2 -0.142 10.703 -20.327 0.85 77.32 ? HO5 IPD 601 A 1 HETATM 27 H HO6 IPD . . . B 2 2.944 9.832 -18.927 0.85 66.45 ? HO6 IPD 601 A 1 # _model_server_stats.io_time_ms 22 _model_server_stats.parse_time_ms 37 _model_server_stats.create_model_time_ms 6 _model_server_stats.query_time_ms 544 _model_server_stats.encode_time_ms 15 _model_server_stats.element_count 27 #