data_7JS5 # _model_server_result.job_id I3ei-pD5hPJeT562SlA_wA _model_server_result.datetime_utc '2025-07-13 18:45:13' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7js5 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":603}' # _entry.id 7JS5 # _exptl.entry_id 7JS5 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 92.094 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description GLYCEROL _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 7JS5 _cell.length_a 59.127 _cell.length_b 83.151 _cell.length_c 99.393 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7JS5 _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall 'P 2ac 2ab' _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 4 _struct_asym.id D _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 53 A CYS 53 1_555 A SG CYS 59 A CYS 59 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.07 ? disulf ? disulf2 A SG CYS 225 A CYS 225 1_555 A SG CYS 244 A CYS 244 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.063 ? disulf ? disulf3 A SG CYS 297 A CYS 297 1_555 A SG CYS 343 A CYS 343 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.011 ? disulf ? disulf4 A SG CYS 417 A CYS 417 1_555 A SG CYS 503 A CYS 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.067 ? # _chem_comp.formula 'C3 H8 O3' _chem_comp.formula_weight 92.094 _chem_comp.id GOL _chem_comp.mon_nstd_flag . _chem_comp.name GLYCEROL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms GLYCERIN;PROPANE-1,2,3-TRIOL # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 GOL sing 129 n n C1 C2 GOL sing 130 n n C1 H11 GOL sing 131 n n C1 H12 GOL sing 132 n n O1 HO1 GOL sing 133 n n C2 O2 GOL sing 134 n n C2 C3 GOL sing 135 n n C2 H2 GOL sing 136 n n O2 HO2 GOL sing 137 n n C3 O3 GOL sing 138 n n C3 H31 GOL sing 139 n n C3 H32 GOL sing 140 n n O3 HO3 GOL sing 141 n n # _atom_sites.entry_id 7JS5 _atom_sites.fract_transf_matrix[1][1] 0.016913 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.012026 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.010061 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 IPD A 1 601 601 IPD MIP . C 3 MES A 1 602 1 MES MES . D 4 GOL A 1 603 1 GOL GOL . E 5 HOH A 1 701 107 HOH HOH . E 5 HOH A 2 702 72 HOH HOH . E 5 HOH A 3 703 104 HOH HOH . E 5 HOH A 4 704 136 HOH HOH . E 5 HOH A 5 705 18 HOH HOH . E 5 HOH A 6 706 108 HOH HOH . E 5 HOH A 7 707 120 HOH HOH . E 5 HOH A 8 708 112 HOH HOH . E 5 HOH A 9 709 22 HOH HOH . E 5 HOH A 10 710 20 HOH HOH . E 5 HOH A 11 711 23 HOH HOH . E 5 HOH A 12 712 48 HOH HOH . E 5 HOH A 13 713 109 HOH HOH . E 5 HOH A 14 714 64 HOH HOH . E 5 HOH A 15 715 129 HOH HOH . E 5 HOH A 16 716 118 HOH HOH . E 5 HOH A 17 717 25 HOH HOH . E 5 HOH A 18 718 15 HOH HOH . E 5 HOH A 19 719 111 HOH HOH . E 5 HOH A 20 720 2 HOH HOH . E 5 HOH A 21 721 59 HOH HOH . E 5 HOH A 22 722 53 HOH HOH . E 5 HOH A 23 723 84 HOH HOH . E 5 HOH A 24 724 6 HOH HOH . E 5 HOH A 25 725 134 HOH HOH . E 5 HOH A 26 726 77 HOH HOH . E 5 HOH A 27 727 7 HOH HOH . E 5 HOH A 28 728 81 HOH HOH . E 5 HOH A 29 729 33 HOH HOH . E 5 HOH A 30 730 105 HOH HOH . E 5 HOH A 31 731 85 HOH HOH . E 5 HOH A 32 732 11 HOH HOH . E 5 HOH A 33 733 14 HOH HOH . E 5 HOH A 34 734 46 HOH HOH . E 5 HOH A 35 735 113 HOH HOH . E 5 HOH A 36 736 35 HOH HOH . E 5 HOH A 37 737 93 HOH HOH . E 5 HOH A 38 738 44 HOH HOH . E 5 HOH A 39 739 126 HOH HOH . E 5 HOH A 40 740 88 HOH HOH . E 5 HOH A 41 741 63 HOH HOH . E 5 HOH A 42 742 122 HOH HOH . E 5 HOH A 43 743 32 HOH HOH . E 5 HOH A 44 744 69 HOH HOH . E 5 HOH A 45 745 71 HOH HOH . E 5 HOH A 46 746 3 HOH HOH . E 5 HOH A 47 747 124 HOH HOH . E 5 HOH A 48 748 34 HOH HOH . E 5 HOH A 49 749 117 HOH HOH . E 5 HOH A 50 750 73 HOH HOH . E 5 HOH A 51 751 137 HOH HOH . E 5 HOH A 52 752 52 HOH HOH . E 5 HOH A 53 753 58 HOH HOH . E 5 HOH A 54 754 110 HOH HOH . E 5 HOH A 55 755 67 HOH HOH . E 5 HOH A 56 756 47 HOH HOH . E 5 HOH A 57 757 68 HOH HOH . E 5 HOH A 58 758 30 HOH HOH . E 5 HOH A 59 759 45 HOH HOH . E 5 HOH A 60 760 86 HOH HOH . E 5 HOH A 61 761 62 HOH HOH . E 5 HOH A 62 762 131 HOH HOH . E 5 HOH A 63 763 37 HOH HOH . E 5 HOH A 64 764 140 HOH HOH . E 5 HOH A 65 765 92 HOH HOH . E 5 HOH A 66 766 94 HOH HOH . E 5 HOH A 67 767 28 HOH HOH . E 5 HOH A 68 768 42 HOH HOH . E 5 HOH A 69 769 29 HOH HOH . E 5 HOH A 70 770 40 HOH HOH . E 5 HOH A 71 771 19 HOH HOH . E 5 HOH A 72 772 4 HOH HOH . E 5 HOH A 73 773 27 HOH HOH . E 5 HOH A 74 774 90 HOH HOH . E 5 HOH A 75 775 8 HOH HOH . E 5 HOH A 76 776 83 HOH HOH . E 5 HOH A 77 777 133 HOH HOH . E 5 HOH A 78 778 75 HOH HOH . E 5 HOH A 79 779 38 HOH HOH . E 5 HOH A 80 780 60 HOH HOH . E 5 HOH A 81 781 57 HOH HOH . E 5 HOH A 82 782 121 HOH HOH . E 5 HOH A 83 783 125 HOH HOH . E 5 HOH A 84 784 141 HOH HOH . E 5 HOH A 85 785 100 HOH HOH . E 5 HOH A 86 786 5 HOH HOH . E 5 HOH A 87 787 31 HOH HOH . E 5 HOH A 88 788 115 HOH HOH . E 5 HOH A 89 789 138 HOH HOH . E 5 HOH A 90 790 26 HOH HOH . E 5 HOH A 91 791 50 HOH HOH . E 5 HOH A 92 792 55 HOH HOH . E 5 HOH A 93 793 119 HOH HOH . E 5 HOH A 94 794 39 HOH HOH . E 5 HOH A 95 795 24 HOH HOH . E 5 HOH A 96 796 139 HOH HOH . E 5 HOH A 97 797 61 HOH HOH . E 5 HOH A 98 798 91 HOH HOH . E 5 HOH A 99 799 51 HOH HOH . E 5 HOH A 100 800 43 HOH HOH . E 5 HOH A 101 801 99 HOH HOH . E 5 HOH A 102 802 70 HOH HOH . E 5 HOH A 103 803 127 HOH HOH . E 5 HOH A 104 804 54 HOH HOH . E 5 HOH A 105 805 1 HOH HOH . E 5 HOH A 106 806 78 HOH HOH . E 5 HOH A 107 807 87 HOH HOH . E 5 HOH A 108 808 12 HOH HOH . E 5 HOH A 109 809 36 HOH HOH . E 5 HOH A 110 810 132 HOH HOH . E 5 HOH A 111 811 41 HOH HOH . E 5 HOH A 112 812 17 HOH HOH . E 5 HOH A 113 813 76 HOH HOH . E 5 HOH A 114 814 128 HOH HOH . E 5 HOH A 115 815 49 HOH HOH . E 5 HOH A 116 816 82 HOH HOH . E 5 HOH A 117 817 80 HOH HOH . E 5 HOH A 118 818 16 HOH HOH . E 5 HOH A 119 819 95 HOH HOH . E 5 HOH A 120 820 89 HOH HOH . E 5 HOH A 121 821 114 HOH HOH . E 5 HOH A 122 822 135 HOH HOH . E 5 HOH A 123 823 96 HOH HOH . E 5 HOH A 124 824 13 HOH HOH . E 5 HOH A 125 825 130 HOH HOH . E 5 HOH A 126 826 66 HOH HOH . E 5 HOH A 127 827 9 HOH HOH . E 5 HOH A 128 828 98 HOH HOH . E 5 HOH A 129 829 56 HOH HOH . E 5 HOH A 130 830 97 HOH HOH . E 5 HOH A 131 831 10 HOH HOH . E 5 HOH A 132 832 74 HOH HOH . E 5 HOH A 133 833 65 HOH HOH . E 5 HOH A 134 834 106 HOH HOH . E 5 HOH A 135 835 123 HOH HOH . E 5 HOH A 136 836 102 HOH HOH . E 5 HOH A 137 837 21 HOH HOH . E 5 HOH A 138 838 103 HOH HOH . E 5 HOH A 139 839 116 HOH HOH . E 5 HOH A 140 840 101 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 GOL . . . D 4 10.02 12.709 -4.146 1 50.45 ? C1 GOL 603 A 1 HETATM 2 O O1 GOL . . . D 4 10.546 13.955 -4.489 1 53.83 ? O1 GOL 603 A 1 HETATM 3 C C2 GOL . . . D 4 10.995 11.649 -4.623 1 50.89 ? C2 GOL 603 A 1 HETATM 4 O O2 GOL . . . D 4 10.614 10.435 -4.05 1 57.05 ? O2 GOL 603 A 1 HETATM 5 C C3 GOL . . . D 4 10.912 11.493 -6.126 1 48.33 ? C3 GOL 603 A 1 HETATM 6 O O3 GOL . . . D 4 9.683 10.88 -6.445 1 47.41 ? O3 GOL 603 A 1 HETATM 7 H H11 GOL . . . D 4 9.16 12.584 -4.577 1 60.52 ? H11 GOL 603 A 1 HETATM 8 H H12 GOL . . . D 4 9.912 12.65 -3.184 1 60.52 ? H12 GOL 603 A 1 HETATM 9 H HO1 GOL . . . D 4 9.929 14.539 -4.455 1 64.58 ? HO1 GOL 603 A 1 HETATM 10 H H2 GOL . . . D 4 11.897 11.904 -4.373 1 61.04 ? H2 GOL 603 A 1 HETATM 11 H HO2 GOL . . . D 4 9.807 10.268 -4.264 1 68.43 ? HO2 GOL 603 A 1 HETATM 12 H H31 GOL . . . D 4 11.644 10.939 -6.438 1 57.97 ? H31 GOL 603 A 1 HETATM 13 H H32 GOL . . . D 4 10.963 12.364 -6.549 1 57.97 ? H32 GOL 603 A 1 HETATM 14 H HO3 GOL . . . D 4 9.769 10.037 -6.416 1 56.87 ? HO3 GOL 603 A 1 # _model_server_stats.io_time_ms 80 _model_server_stats.parse_time_ms 15 _model_server_stats.create_model_time_ms 6 _model_server_stats.query_time_ms 320 _model_server_stats.encode_time_ms 8 _model_server_stats.element_count 14 #