data_7JSK # _model_server_result.job_id cCHwbeLyJ5XLStuG8E2HSA _model_server_result.datetime_utc '2025-02-20 16:08:20' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7jsk # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"G","auth_seq_id":601}' # _entry.id 7JSK # _exptl.entry_id 7JSK _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 221.208 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 2-acetamido-2-deoxy-beta-D-glucopyranose _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 7JSK _cell.length_a 1 _cell.length_b 1 _cell.length_c 1 _cell.Z_PDB ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 7JSK _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 G N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A ND2 ASN 562 A ASN 562 1_555 C C1 NAG . A NAG 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.449 ? covale ? covale2 B ND2 ASN 562 B ASN 562 1_555 G C1 NAG . B NAG 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.449 ? metalc ? metalc1 A O SER 136 A SER 136 1_555 E NA NA . A NA 603 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.081 ? metalc ? metalc2 A O GLY 226 A GLY 226 1_555 E NA NA . A NA 603 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.843 ? metalc ? metalc3 A O THR 460 A THR 460 1_555 F NA NA . A NA 604 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.17 ? metalc ? metalc4 A OG1 THR 460 A THR 460 1_555 F NA NA . A NA 604 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.805 ? metalc ? metalc5 A O THR 463 A THR 463 1_555 F NA NA . A NA 604 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.082 ? metalc ? metalc6 A OD1 ASN 465 A ASN 465 1_555 F NA NA . A NA 604 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.87 ? metalc ? metalc7 A O ALA 507 A ALA 507 1_555 F NA NA . A NA 604 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.982 ? metalc ? metalc8 B O SER 136 B SER 136 1_555 I NA NA . B NA 603 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.084 ? metalc ? metalc9 B O GLY 226 B GLY 226 1_555 I NA NA . B NA 603 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.837 ? metalc ? metalc10 B O THR 460 B THR 460 1_555 J NA NA . B NA 604 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.164 ? metalc ? metalc11 B OG1 THR 460 B THR 460 1_555 J NA NA . B NA 604 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.794 ? metalc ? metalc12 B O THR 463 B THR 463 1_555 J NA NA . B NA 604 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.094 ? metalc ? metalc13 B OD1 ASN 465 B ASN 465 1_555 J NA NA . B NA 604 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.864 ? metalc ? metalc14 B O ALA 507 B ALA 507 1_555 J NA NA . B NA 604 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.996 ? # _chem_comp.formula 'C8 H15 N O6' _chem_comp.formula_weight 221.208 _chem_comp.id NAG _chem_comp.mon_nstd_flag . _chem_comp.name 2-acetamido-2-deoxy-beta-D-glucopyranose _chem_comp.type 'd-saccharide, beta linking' _chem_comp.pdbx_synonyms N-acetyl-beta-D-glucosamine;2-acetamido-2-deoxy-beta-D-glucose;2-acetamido-2-deoxy-D-glucose;2-acetamido-2-deoxy-glucose;N-ACETYL-D-GLUCOSAMINE # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 NAG sing 255 n n C1 O1 NAG sing 256 n n C1 O5 NAG sing 257 n n C1 H1 NAG sing 258 n n C2 C3 NAG sing 259 n n C2 N2 NAG sing 260 n n C2 H2 NAG sing 261 n n C3 C4 NAG sing 262 n n C3 O3 NAG sing 263 n n C3 H3 NAG sing 264 n n C4 C5 NAG sing 265 n n C4 O4 NAG sing 266 n n C4 H4 NAG sing 267 n n C5 C6 NAG sing 268 n n C5 O5 NAG sing 269 n n C5 H5 NAG sing 270 n n C6 O6 NAG sing 271 n n C6 H61 NAG sing 272 n n C6 H62 NAG sing 273 n n C7 C8 NAG sing 274 n n C7 N2 NAG sing 275 n n C7 O7 NAG doub 276 n n C8 H81 NAG sing 277 n n C8 H82 NAG sing 278 n n C8 H83 NAG sing 279 n n N2 HN2 NAG sing 280 n n O1 HO1 NAG sing 281 n n O3 HO3 NAG sing 282 n n O4 HO4 NAG sing 283 n n O6 HO6 NAG sing 284 n n # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.identifier _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version NAG DGlcpNAcb 'CONDENSED IUPAC CARBOHYDRATE SYMBOL' GMML 1 NAG N-acetyl-b-D-glucopyranosamine 'COMMON NAME' GMML 1 NAG b-D-GlcpNAc 'IUPAC CARBOHYDRATE SYMBOL' PDB-CARE 1 NAG GlcNAc 'SNFG CARBOHYDRATE SYMBOL' GMML 1 # _atom_sites.entry_id 7JSK _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 NAG A 1 601 1080 NAG NAG . D 3 CIT A 1 602 1101 CIT CIT . E 4 NA A 1 603 503 NA NA . F 4 NA A 1 604 504 NA NA . G 2 NAG B 1 601 1080 NAG NAG . H 3 CIT B 1 602 1101 CIT CIT . I 4 NA B 1 603 501 NA NA . J 4 NA B 1 604 502 NA NA . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 NAG . . . G 2 130.547 118.459 104.994 1 79.06 ? C1 NAG 601 B 1 HETATM 2 C C2 NAG . . . G 2 132.113 118.169 104.981 1 79.06 ? C2 NAG 601 B 1 HETATM 3 C C3 NAG . . . G 2 132.632 118.213 103.542 1 79.06 ? C3 NAG 601 B 1 HETATM 4 C C4 NAG . . . G 2 131.814 117.177 102.767 1 79.06 ? C4 NAG 601 B 1 HETATM 5 C C5 NAG . . . G 2 130.333 117.634 102.786 1 79.06 ? C5 NAG 601 B 1 HETATM 6 C C6 NAG . . . G 2 129.557 116.569 102.001 1 79.06 ? C6 NAG 601 B 1 HETATM 7 C C7 NAG . . . G 2 132.966 118.941 107.14 1 79.06 ? C7 NAG 601 B 1 HETATM 8 C C8 NAG . . . G 2 133.646 120.063 107.854 1 79.06 ? C8 NAG 601 B 1 HETATM 9 N N2 NAG . . . G 2 132.76 119.179 105.785 1 79.06 ? N2 NAG 601 B 1 HETATM 10 O O3 NAG . . . G 2 133.965 117.837 103.589 1 79.06 ? O3 NAG 601 B 1 HETATM 11 O O4 NAG . . . G 2 132.334 117.226 101.473 1 79.06 ? O4 NAG 601 B 1 HETATM 12 O O5 NAG . . . G 2 129.829 117.622 104.082 1 79.06 ? O5 NAG 601 B 1 HETATM 13 O O6 NAG . . . G 2 128.951 117.199 100.923 1 79.06 ? O6 NAG 601 B 1 HETATM 14 O O7 NAG . . . G 2 132.619 117.91 107.698 1 79.06 ? O7 NAG 601 B 1 HETATM 15 H H2 NAG . . . G 2 132.276 117.295 105.354 1 79.06 ? H2 NAG 601 B 1 HETATM 16 H H3 NAG . . . G 2 132.518 119.086 103.132 1 79.06 ? H3 NAG 601 B 1 HETATM 17 H H4 NAG . . . G 2 131.926 116.294 103.166 1 79.06 ? H4 NAG 601 B 1 HETATM 18 H H5 NAG . . . G 2 130.235 118.512 102.392 1 79.06 ? H5 NAG 601 B 1 HETATM 19 H H61 NAG . . . G 2 130.179 115.884 101.707 1 79.06 ? H61 NAG 601 B 1 HETATM 20 H H62 NAG . . . G 2 128.937 116.12 102.594 1 79.06 ? H62 NAG 601 B 1 HETATM 21 H H81 NAG . . . G 2 133.922 119.812 108.742 1 79.06 ? H81 NAG 601 B 1 HETATM 22 H H82 NAG . . . G 2 133.034 120.806 107.93 1 79.06 ? H82 NAG 601 B 1 HETATM 23 H H83 NAG . . . G 2 134.422 120.372 107.366 1 79.06 ? H83 NAG 601 B 1 HETATM 24 H HN2 NAG . . . G 2 133.016 119.908 105.414 1 79.06 ? HN2 NAG 601 B 1 HETATM 25 H HO3 NAG . . . G 2 134.348 118.35 104.146 1 79.06 ? HO3 NAG 601 B 1 HETATM 26 H HO4 NAG . . . G 2 133.04 117.711 101.502 1 79.06 ? HO4 NAG 601 B 1 # _model_server_stats.io_time_ms 48 _model_server_stats.parse_time_ms 40 _model_server_stats.create_model_time_ms 65 _model_server_stats.query_time_ms 1329 _model_server_stats.encode_time_ms 11 _model_server_stats.element_count 26 #