data_7JSK # _model_server_result.job_id gJwN-bA8H9e3GHI3erd9BQ _model_server_result.datetime_utc '2025-02-20 16:15:00' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7jsk # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":602}' # _entry.id 7JSK # _exptl.entry_id 7JSK _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 192.124 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'CITRIC ACID' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 7JSK _cell.length_a 1 _cell.length_b 1 _cell.length_c 1 _cell.Z_PDB ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 7JSK _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 D N N ? 3 H N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A ND2 ASN 562 A ASN 562 1_555 C C1 NAG . A NAG 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.449 ? covale ? covale2 B ND2 ASN 562 B ASN 562 1_555 G C1 NAG . B NAG 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.449 ? metalc ? metalc1 A O SER 136 A SER 136 1_555 E NA NA . A NA 603 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.081 ? metalc ? metalc2 A O GLY 226 A GLY 226 1_555 E NA NA . A NA 603 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.843 ? metalc ? metalc3 A O THR 460 A THR 460 1_555 F NA NA . A NA 604 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.17 ? metalc ? metalc4 A OG1 THR 460 A THR 460 1_555 F NA NA . A NA 604 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.805 ? metalc ? metalc5 A O THR 463 A THR 463 1_555 F NA NA . A NA 604 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.082 ? metalc ? metalc6 A OD1 ASN 465 A ASN 465 1_555 F NA NA . A NA 604 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.87 ? metalc ? metalc7 A O ALA 507 A ALA 507 1_555 F NA NA . A NA 604 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.982 ? metalc ? metalc8 B O SER 136 B SER 136 1_555 I NA NA . B NA 603 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.084 ? metalc ? metalc9 B O GLY 226 B GLY 226 1_555 I NA NA . B NA 603 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.837 ? metalc ? metalc10 B O THR 460 B THR 460 1_555 J NA NA . B NA 604 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.164 ? metalc ? metalc11 B OG1 THR 460 B THR 460 1_555 J NA NA . B NA 604 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.794 ? metalc ? metalc12 B O THR 463 B THR 463 1_555 J NA NA . B NA 604 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.094 ? metalc ? metalc13 B OD1 ASN 465 B ASN 465 1_555 J NA NA . B NA 604 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.864 ? metalc ? metalc14 B O ALA 507 B ALA 507 1_555 J NA NA . B NA 604 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.996 ? # _chem_comp.formula 'C6 H8 O7' _chem_comp.formula_weight 192.124 _chem_comp.id CIT _chem_comp.mon_nstd_flag . _chem_comp.name 'CITRIC ACID' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 CIT doub 70 n n C1 O2 CIT sing 71 n n C1 C2 CIT sing 72 n n O2 HO2 CIT sing 73 n n C2 C3 CIT sing 74 n n C2 H21 CIT sing 75 n n C2 H22 CIT sing 76 n n C3 O7 CIT sing 77 n n C3 C4 CIT sing 78 n n C3 C6 CIT sing 79 n n O7 HO7 CIT sing 80 n n C4 C5 CIT sing 81 n n C4 H41 CIT sing 82 n n C4 H42 CIT sing 83 n n C5 O3 CIT doub 84 n n C5 O4 CIT sing 85 n n O4 HO4 CIT sing 86 n n C6 O5 CIT doub 87 n n C6 O6 CIT sing 88 n n O6 HO6 CIT sing 89 n n # _atom_sites.entry_id 7JSK _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 NAG A 1 601 1080 NAG NAG . D 3 CIT A 1 602 1101 CIT CIT . E 4 NA A 1 603 503 NA NA . F 4 NA A 1 604 504 NA NA . G 2 NAG B 1 601 1080 NAG NAG . H 3 CIT B 1 602 1101 CIT CIT . I 4 NA B 1 603 501 NA NA . J 4 NA B 1 604 502 NA NA . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 CIT . . . D 3 136.614 149.342 138.417 1 70.65 ? C1 CIT 602 A 1 HETATM 2 O O1 CIT . . . D 3 135.794 149.498 137.493 1 70.65 ? O1 CIT 602 A 1 HETATM 3 O O2 CIT . . . D 3 137.854 149.15 138.192 1 70.65 ? O2 CIT 602 A 1 HETATM 4 C C2 CIT . . . D 3 136.195 149.367 139.89 1 70.65 ? C2 CIT 602 A 1 HETATM 5 C C3 CIT . . . D 3 136.835 150.491 140.725 1 70.65 ? C3 CIT 602 A 1 HETATM 6 O O7 CIT . . . D 3 137.007 151.624 139.934 1 70.65 ? O7 CIT 602 A 1 HETATM 7 C C4 CIT . . . D 3 135.938 150.835 141.93 1 70.65 ? C4 CIT 602 A 1 HETATM 8 C C5 CIT . . . D 3 134.506 151.278 141.568 1 70.65 ? C5 CIT 602 A 1 HETATM 9 O O3 CIT . . . D 3 133.711 150.355 141.19 1 70.65 ? O3 CIT 602 A 1 HETATM 10 O O4 CIT . . . D 3 134.137 152.464 141.65 1 70.65 ? O4 CIT 602 A 1 HETATM 11 C C6 CIT . . . D 3 138.212 149.993 141.258 1 70.65 ? C6 CIT 602 A 1 HETATM 12 O O5 CIT . . . D 3 138.819 149.046 140.74 1 70.65 ? O5 CIT 602 A 1 HETATM 13 O O6 CIT . . . D 3 138.638 150.637 142.26 1 70.65 ? O6 CIT 602 A 1 # _model_server_stats.io_time_ms 10 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 15 _model_server_stats.query_time_ms 237 _model_server_stats.encode_time_ms 7 _model_server_stats.element_count 13 #