data_7JSN # _model_server_result.job_id NzG9i9uWIZf-tYKXQS-JVQ _model_server_result.datetime_utc '2024-12-21 12:44:08' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7jsn # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"I","auth_seq_id":904}' # _entry.id 7JSN # _exptl.entry_id 7JSN _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 488.603 _entity.id 7 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 2-{2-ETHOXY-5-[(4-ETHYLPIPERAZIN-1-YL)SULFONYL]PHENYL}-5-METHYL-7-PROPYLIMIDAZO[5,1-F][1,2,4]TRIAZIN-4(1H)-ONE _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 7JSN _cell.length_a 1 _cell.length_b 1 _cell.length_c 1 _cell.Z_PDB ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 7JSN _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details hexameric _pdbx_struct_assembly.oligomeric_count 6 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 7 I N N ? 7 M N N # _chem_comp.formula 'C23 H32 N6 O4 S' _chem_comp.formula_weight 488.603 _chem_comp.id VDN _chem_comp.mon_nstd_flag . _chem_comp.name 2-{2-ETHOXY-5-[(4-ETHYLPIPERAZIN-1-YL)SULFONYL]PHENYL}-5-METHYL-7-PROPYLIMIDAZO[5,1-F][1,2,4]TRIAZIN-4(1H)-ONE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'VARDENAFIL, LEVITRA' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 VDN sing 462 n n C1 H11 VDN sing 463 n n C1 H12 VDN sing 464 n n C1 H13 VDN sing 465 n n C2 O3 VDN sing 466 n n C2 H21 VDN sing 467 n n C2 H22 VDN sing 468 n n O3 C4 VDN sing 469 n n C4 C5 VDN doub 470 n y C4 C9 VDN sing 471 n y C5 C6 VDN sing 472 n y C5 H5 VDN sing 473 n n C6 C7 VDN doub 474 n y C6 H6 VDN sing 475 n n C7 C8 VDN sing 476 n y C7 S10 VDN sing 477 n n C8 C9 VDN doub 478 n y C8 H8 VDN sing 479 n n C9 C21 VDN sing 480 n y S10 O11 VDN doub 481 n n S10 O12 VDN doub 482 n n S10 N14 VDN sing 483 n n C13 C20 VDN sing 484 n n C13 H131 VDN sing 485 n n C13 H132 VDN sing 486 n n C13 H133 VDN sing 487 n n N14 C15 VDN sing 488 n n N14 C19 VDN sing 489 n n C15 C16 VDN sing 490 n n C15 H151 VDN sing 491 n n C15 H152 VDN sing 492 n n C16 N17 VDN sing 493 n n C16 H161 VDN sing 494 n n C16 H162 VDN sing 495 n n N17 C18 VDN sing 496 n n N17 C20 VDN sing 497 n n C18 C19 VDN sing 498 n n C18 H181 VDN sing 499 n n C18 H182 VDN sing 500 n n C19 H191 VDN sing 501 n n C19 H192 VDN sing 502 n n C20 H201 VDN sing 503 n n C20 H202 VDN sing 504 n n C21 N22 VDN doub 505 n y C21 N26 VDN sing 506 n y N22 C23 VDN sing 507 n y C23 C24 VDN sing 508 n y C23 O27 VDN doub 509 n n C24 N25 VDN sing 510 n y C24 C28 VDN doub 511 n y N25 N26 VDN sing 512 n y N25 C30 VDN sing 513 n y N26 H26 VDN sing 514 n n C28 N29 VDN sing 515 n y C28 C31 VDN sing 516 n n N29 C30 VDN doub 517 n y C30 C32 VDN sing 518 n n C31 H311 VDN sing 519 n n C31 H312 VDN sing 520 n n C31 H313 VDN sing 521 n n C32 C33 VDN sing 522 n n C32 H321 VDN sing 523 n n C32 H322 VDN sing 524 n n C33 C34 VDN sing 525 n n C33 H331 VDN sing 526 n n C33 H332 VDN sing 527 n n C34 H341 VDN sing 528 n n C34 H342 VDN sing 529 n n C34 H343 VDN sing 530 n n # _atom_sites.entry_id 7JSN _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code G 5 ZN A 1 902 902 ZN ZN . H 6 MG A 1 903 903 MG MG . I 7 VDN A 1 904 904 VDN VDN . J 8 35G A 1 905 905 35G 35G . K 5 ZN B 1 902 902 ZN ZN . L 6 MG B 1 903 903 MG MG . M 7 VDN B 1 904 904 VDN VDN . N 8 35G B 1 905 905 35G 35G . O 9 GTP E 1 351 351 GTP GTP . P 9 GTP F 1 351 351 GTP GTP . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 VDN . . . I 7 140.572 90.092 153.784 1 105.82 ? C1 VDN 904 A 1 HETATM 2 C C2 VDN . . . I 7 139.22 90.727 153.802 1 105.82 ? C2 VDN 904 A 1 HETATM 3 O O3 VDN . . . I 7 138.813 90.902 152.442 1 105.82 ? O3 VDN 904 A 1 HETATM 4 C C4 VDN . . . I 7 137.537 91.312 152.184 1 105.82 ? C4 VDN 904 A 1 HETATM 5 C C5 VDN . . . I 7 136.598 91.495 153.188 1 105.82 ? C5 VDN 904 A 1 HETATM 6 C C6 VDN . . . I 7 135.319 91.91 152.882 1 105.82 ? C6 VDN 904 A 1 HETATM 7 C C7 VDN . . . I 7 134.983 92.165 151.568 1 105.82 ? C7 VDN 904 A 1 HETATM 8 C C8 VDN . . . I 7 135.911 91.983 150.558 1 105.82 ? C8 VDN 904 A 1 HETATM 9 C C9 VDN . . . I 7 137.203 91.559 150.846 1 105.82 ? C9 VDN 904 A 1 HETATM 10 S S10 VDN . . . I 7 133.345 92.69 151.167 1 105.82 ? S10 VDN 904 A 1 HETATM 11 O O11 VDN . . . I 7 132.714 91.643 150.434 1 105.82 ? O11 VDN 904 A 1 HETATM 12 O O12 VDN . . . I 7 132.733 93.171 152.361 1 105.82 ? O12 VDN 904 A 1 HETATM 13 C C13 VDN . . . I 7 132.216 98.005 147.179 1 105.82 ? C13 VDN 904 A 1 HETATM 14 N N14 VDN . . . I 7 133.46 93.966 150.153 1 105.82 ? N14 VDN 904 A 1 HETATM 15 C C15 VDN . . . I 7 132.206 94.377 149.506 1 105.82 ? C15 VDN 904 A 1 HETATM 16 C C16 VDN . . . I 7 132.509 95.364 148.403 1 105.82 ? C16 VDN 904 A 1 HETATM 17 N N17 VDN . . . I 7 133.205 96.537 148.94 1 105.82 ? N17 VDN 904 A 1 HETATM 18 C C18 VDN . . . I 7 134.469 96.091 149.535 1 105.82 ? C18 VDN 904 A 1 HETATM 19 C C19 VDN . . . I 7 134.206 95.125 150.665 1 105.82 ? C19 VDN 904 A 1 HETATM 20 C C20 VDN . . . I 7 133.461 97.516 147.864 1 105.82 ? C20 VDN 904 A 1 HETATM 21 C C21 VDN . . . I 7 138.163 91.388 149.737 1 105.82 ? C21 VDN 904 A 1 HETATM 22 N N22 VDN . . . I 7 138.943 90.299 149.782 1 105.82 ? N22 VDN 904 A 1 HETATM 23 C C23 VDN . . . I 7 139.832 90.099 148.791 1 105.82 ? C23 VDN 904 A 1 HETATM 24 C C24 VDN . . . I 7 139.904 91.026 147.714 1 105.82 ? C24 VDN 904 A 1 HETATM 25 N N25 VDN . . . I 7 139.075 92.123 147.702 1 105.82 ? N25 VDN 904 A 1 HETATM 26 N N26 VDN . . . I 7 138.16 92.31 148.748 1 105.82 ? N26 VDN 904 A 1 HETATM 27 O O27 VDN . . . I 7 140.555 89.093 148.848 1 105.82 ? O27 VDN 904 A 1 HETATM 28 C C28 VDN . . . I 7 140.661 91.13 146.567 1 105.82 ? C28 VDN 904 A 1 HETATM 29 N N29 VDN . . . I 7 140.321 92.232 145.872 1 105.82 ? N29 VDN 904 A 1 HETATM 30 C C30 VDN . . . I 7 139.348 92.842 146.557 1 105.82 ? C30 VDN 904 A 1 HETATM 31 C C31 VDN . . . I 7 141.73 90.22 146.062 1 105.82 ? C31 VDN 904 A 1 HETATM 32 C C32 VDN . . . I 7 138.677 94.096 146.131 1 105.82 ? C32 VDN 904 A 1 HETATM 33 C C33 VDN . . . I 7 138.45 95.09 147.242 1 105.82 ? C33 VDN 904 A 1 HETATM 34 C C34 VDN . . . I 7 139.744 95.656 147.764 1 105.82 ? C34 VDN 904 A 1 # _model_server_stats.io_time_ms 11 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 31 _model_server_stats.query_time_ms 263 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 34 #