data_7JSN
#
_model_server_result.job_id            KgAbgRCUc9HAg4v8DAOL4Q 
_model_server_result.datetime_utc      '2024-12-21 13:06:00' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          7jsn 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"M","auth_seq_id":904}' 
#
_entry.id    7JSN 
#
_exptl.entry_id    7JSN 
_exptl.method      'ELECTRON MICROSCOPY' 
#
_entity.details                     ? 
_entity.formula_weight              488.603 
_entity.id                          7 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            2-{2-ETHOXY-5-[(4-ETHYLPIPERAZIN-1-YL)SULFONYL]PHENYL}-5-METHYL-7-PROPYLIMIDAZO[5,1-F][1,2,4]TRIAZIN-4(1H)-ONE 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            7JSN 
_cell.length_a            1 
_cell.length_b            1 
_cell.length_c            1 
_cell.Z_PDB               ? 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 7JSN 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        1 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    hexameric 
_pdbx_struct_assembly.oligomeric_count      6 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    ? 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 7 I N N 
? 7 M N N 
#
_chem_comp.formula           'C23 H32 N6 O4 S' 
_chem_comp.formula_weight    488.603 
_chem_comp.id                VDN 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              2-{2-ETHOXY-5-[(4-ETHYLPIPERAZIN-1-YL)SULFONYL]PHENYL}-5-METHYL-7-PROPYLIMIDAZO[5,1-F][1,2,4]TRIAZIN-4(1H)-ONE 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     'VARDENAFIL, LEVITRA' 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 C2 VDN sing 462 n n 
C1 H11 VDN sing 463 n n 
C1 H12 VDN sing 464 n n 
C1 H13 VDN sing 465 n n 
C2 O3 VDN sing 466 n n 
C2 H21 VDN sing 467 n n 
C2 H22 VDN sing 468 n n 
O3 C4 VDN sing 469 n n 
C4 C5 VDN doub 470 n y 
C4 C9 VDN sing 471 n y 
C5 C6 VDN sing 472 n y 
C5 H5 VDN sing 473 n n 
C6 C7 VDN doub 474 n y 
C6 H6 VDN sing 475 n n 
C7 C8 VDN sing 476 n y 
C7 S10 VDN sing 477 n n 
C8 C9 VDN doub 478 n y 
C8 H8 VDN sing 479 n n 
C9 C21 VDN sing 480 n y 
S10 O11 VDN doub 481 n n 
S10 O12 VDN doub 482 n n 
S10 N14 VDN sing 483 n n 
C13 C20 VDN sing 484 n n 
C13 H131 VDN sing 485 n n 
C13 H132 VDN sing 486 n n 
C13 H133 VDN sing 487 n n 
N14 C15 VDN sing 488 n n 
N14 C19 VDN sing 489 n n 
C15 C16 VDN sing 490 n n 
C15 H151 VDN sing 491 n n 
C15 H152 VDN sing 492 n n 
C16 N17 VDN sing 493 n n 
C16 H161 VDN sing 494 n n 
C16 H162 VDN sing 495 n n 
N17 C18 VDN sing 496 n n 
N17 C20 VDN sing 497 n n 
C18 C19 VDN sing 498 n n 
C18 H181 VDN sing 499 n n 
C18 H182 VDN sing 500 n n 
C19 H191 VDN sing 501 n n 
C19 H192 VDN sing 502 n n 
C20 H201 VDN sing 503 n n 
C20 H202 VDN sing 504 n n 
C21 N22 VDN doub 505 n y 
C21 N26 VDN sing 506 n y 
N22 C23 VDN sing 507 n y 
C23 C24 VDN sing 508 n y 
C23 O27 VDN doub 509 n n 
C24 N25 VDN sing 510 n y 
C24 C28 VDN doub 511 n y 
N25 N26 VDN sing 512 n y 
N25 C30 VDN sing 513 n y 
N26 H26 VDN sing 514 n n 
C28 N29 VDN sing 515 n y 
C28 C31 VDN sing 516 n n 
N29 C30 VDN doub 517 n y 
C30 C32 VDN sing 518 n n 
C31 H311 VDN sing 519 n n 
C31 H312 VDN sing 520 n n 
C31 H313 VDN sing 521 n n 
C32 C33 VDN sing 522 n n 
C32 H321 VDN sing 523 n n 
C32 H322 VDN sing 524 n n 
C33 C34 VDN sing 525 n n 
C33 H331 VDN sing 526 n n 
C33 H332 VDN sing 527 n n 
C34 H341 VDN sing 528 n n 
C34 H342 VDN sing 529 n n 
C34 H343 VDN sing 530 n n 
#
_atom_sites.entry_id                     7JSN 
_atom_sites.fract_transf_matrix[1][1]    1 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    1 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    1 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
G 5 ZN A 1 902 902 ZN ZN . 
H 6 MG A 1 903 903 MG MG . 
I 7 VDN A 1 904 904 VDN VDN . 
J 8 35G A 1 905 905 35G 35G . 
K 5 ZN B 1 902 902 ZN ZN . 
L 6 MG B 1 903 903 MG MG . 
M 7 VDN B 1 904 904 VDN VDN . 
N 8 35G B 1 905 905 35G 35G . 
O 9 GTP E 1 351 351 GTP GTP . 
P 9 GTP F 1 351 351 GTP GTP . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 VDN . . . M 7 183.877 127.606 132.843 1 108.98 ? C1 VDN 904 B 1 
HETATM 2 C C2 VDN . . . M 7 183.712 128.998 132.325 1 108.98 ? C2 VDN 904 B 1 
HETATM 3 O O3 VDN . . . M 7 183.494 129.843 133.455 1 108.98 ? O3 VDN 904 B 1 
HETATM 4 C C4 VDN . . . M 7 183.131 131.14 133.244 1 108.98 ? C4 VDN 904 B 1 
HETATM 5 C C5 VDN . . . M 7 183.274 131.758 132.012 1 108.98 ? C5 VDN 904 B 1 
HETATM 6 C C6 VDN . . . M 7 182.888 133.069 131.842 1 108.98 ? C6 VDN 904 B 1 
HETATM 7 C C7 VDN . . . M 7 182.323 133.757 132.899 1 108.98 ? C7 VDN 904 B 1 
HETATM 8 C C8 VDN . . . M 7 182.18 133.15 134.136 1 108.98 ? C8 VDN 904 B 1 
HETATM 9 C C9 VDN . . . M 7 182.569 131.827 134.328 1 108.98 ? C9 VDN 904 B 1 
HETATM 10 S S10 VDN . . . M 7 181.844 135.441 132.669 1 108.98 ? S10 VDN 904 B 1 
HETATM 11 O O11 VDN . . . M 7 182.779 136.253 133.377 1 108.98 ? O11 VDN 904 B 1 
HETATM 12 O O12 VDN . . . M 7 181.652 135.648 131.272 1 108.98 ? O12 VDN 904 B 1 
HETATM 13 C C13 VDN . . . M 7 175.323 135.558 134.272 1 108.98 ? C13 VDN 904 B 1 
HETATM 14 N N14 VDN . . . M 7 180.385 135.676 133.37 1 108.98 ? N14 VDN 904 B 1 
HETATM 15 C C15 VDN . . . M 7 179.97 137.079 133.506 1 108.98 ? C15 VDN 904 B 1 
HETATM 16 C C16 VDN . . . M 7 178.746 137.16 134.389 1 108.98 ? C16 VDN 904 B 1 
HETATM 17 N N17 VDN . . . M 7 177.65 136.359 133.833 1 108.98 ? N17 VDN 904 B 1 
HETATM 18 C C18 VDN . . . M 7 178.094 134.966 133.753 1 108.98 ? C18 VDN 904 B 1 
HETATM 19 C C19 VDN . . . M 7 179.29 134.853 132.841 1 108.98 ? C19 VDN 904 B 1 
HETATM 20 C C20 VDN . . . M 7 176.449 136.463 134.687 1 108.98 ? C20 VDN 904 B 1 
HETATM 21 C C21 VDN . . . M 7 182.403 131.193 135.653 1 108.98 ? C21 VDN 904 B 1 
HETATM 22 N N22 VDN . . . M 7 183.464 130.517 136.121 1 108.98 ? N22 VDN 904 B 1 
HETATM 23 C C23 VDN . . . M 7 183.375 129.924 137.322 1 108.98 ? C23 VDN 904 B 1 
HETATM 24 C C24 VDN . . . M 7 182.173 130.03 138.07 1 108.98 ? C24 VDN 904 B 1 
HETATM 25 N N25 VDN . . . M 7 181.106 130.734 137.561 1 108.98 ? N25 VDN 904 B 1 
HETATM 26 N N26 VDN . . . M 7 181.224 131.349 136.304 1 108.98 ? N26 VDN 904 B 1 
HETATM 27 O O27 VDN . . . M 7 184.359 129.295 137.737 1 108.98 ? O27 VDN 904 B 1 
HETATM 28 C C28 VDN . . . M 7 181.753 129.564 139.295 1 108.98 ? C28 VDN 904 B 1 
HETATM 29 N N29 VDN . . . M 7 180.489 129.955 139.546 1 108.98 ? N29 VDN 904 B 1 
HETATM 30 C C30 VDN . . . M 7 180.087 130.674 138.493 1 108.98 ? C30 VDN 904 B 1 
HETATM 31 C C31 VDN . . . M 7 182.498 128.736 140.288 1 108.98 ? C31 VDN 904 B 1 
HETATM 32 C C32 VDN . . . M 7 178.743 131.289 138.366 1 108.98 ? C32 VDN 904 B 1 
HETATM 33 C C33 VDN . . . M 7 178.153 131.213 136.979 1 108.98 ? C33 VDN 904 B 1 
HETATM 34 C C34 VDN . . . M 7 176.854 131.97 136.863 1 108.98 ? C34 VDN 904 B 1 
#
_model_server_stats.io_time_ms              10 
_model_server_stats.parse_time_ms           10 
_model_server_stats.create_model_time_ms    44 
_model_server_stats.query_time_ms           249 
_model_server_stats.encode_time_ms          9 
_model_server_stats.element_count           34 
#