data_7JSO # _model_server_result.job_id xKUp8haY_Awkc7KWLIrHwA _model_server_result.datetime_utc '2024-12-27 19:12:53' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7jso # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"I","auth_seq_id":700}' # _entry.id 7JSO # _exptl.entry_id 7JSO _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 665.441 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '1,4-DIHYDRONICOTINAMIDE ADENINE DINUCLEOTIDE' _entity.pdbx_number_of_molecules 8 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90.01 _cell.angle_gamma 90 _cell.entry_id 7JSO _cell.length_a 333.816 _cell.length_b 161.095 _cell.length_c 84.999 _cell.Z_PDB 32 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7JSO _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 1 2 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA tetrameric 4 author_and_software_defined_assembly 1 PISA tetrameric 4 author_and_software_defined_assembly 2 PISA tetrameric 4 software_defined_assembly 3 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,I,J,M,N 1 1,2 B,D,K,L,O,P 2 1,2 E,G,H,Q,R,U,V,W,X 3 1 F,S,T 3 3 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_756 -x+2,y,-z+1 -1 0 0 0 1 0 0 0 -1 667.617165 0 84.998999 3 'crystal symmetry operation' 4_747 -x+5/2,y-1/2,-z+2 -1 0 0 0 1 0 0 0 -1 834.51033 -80.5475 169.997997 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 I N N ? 2 K N N ? 2 M N N ? 2 O N N ? 2 Q N N ? 2 S N N ? 2 U N N ? 2 W N N # _chem_comp.formula 'C21 H29 N7 O14 P2' _chem_comp.formula_weight 665.441 _chem_comp.id NAI _chem_comp.mon_nstd_flag . _chem_comp.name '1,4-DIHYDRONICOTINAMIDE ADENINE DINUCLEOTIDE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms NADH # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PA O1A NAI doub 258 n n PA O2A NAI sing 259 n n PA O5B NAI sing 260 n n PA O3 NAI sing 261 n n O2A HOA2 NAI sing 262 n n O5B C5B NAI sing 263 n n C5B C4B NAI sing 264 n n C5B H51A NAI sing 265 n n C5B H52A NAI sing 266 n n C4B O4B NAI sing 267 n n C4B C3B NAI sing 268 n n C4B H4B NAI sing 269 n n O4B C1B NAI sing 270 n n C3B O3B NAI sing 271 n n C3B C2B NAI sing 272 n n C3B H3B NAI sing 273 n n O3B HO3A NAI sing 274 n n C2B O2B NAI sing 275 n n C2B C1B NAI sing 276 n n C2B H2B NAI sing 277 n n O2B HO2A NAI sing 278 n n C1B N9A NAI sing 279 n n C1B H1B NAI sing 280 n n N9A C8A NAI sing 281 n y N9A C4A NAI sing 282 n y C8A N7A NAI doub 283 n y C8A H8A NAI sing 284 n n N7A C5A NAI sing 285 n y C5A C6A NAI sing 286 n y C5A C4A NAI doub 287 n y C6A N6A NAI sing 288 n n C6A N1A NAI doub 289 n y N6A H61A NAI sing 290 n n N6A H62A NAI sing 291 n n N1A C2A NAI sing 292 n y C2A N3A NAI doub 293 n y C2A H2A NAI sing 294 n n N3A C4A NAI sing 295 n y O3 PN NAI sing 296 n n PN O1N NAI sing 297 n n PN O2N NAI doub 298 n n PN O5D NAI sing 299 n n O1N HO1N NAI sing 300 n n O5D C5D NAI sing 301 n n C5D C4D NAI sing 302 n n C5D H51N NAI sing 303 n n C5D H52N NAI sing 304 n n C4D O4D NAI sing 305 n n C4D C3D NAI sing 306 n n C4D H4D NAI sing 307 n n O4D C1D NAI sing 308 n n C3D O3D NAI sing 309 n n C3D C2D NAI sing 310 n n C3D H3D NAI sing 311 n n O3D HO3N NAI sing 312 n n C2D O2D NAI sing 313 n n C2D C1D NAI sing 314 n n C2D H2D NAI sing 315 n n O2D HO2N NAI sing 316 n n C1D N1N NAI sing 317 n n C1D H1D NAI sing 318 n n N1N C2N NAI sing 319 n n N1N C6N NAI sing 320 n n C2N C3N NAI doub 321 n n C2N H2N NAI sing 322 n n C3N C7N NAI sing 323 n n C3N C4N NAI sing 324 n n C7N O7N NAI doub 325 n n C7N N7N NAI sing 326 n n N7N H71N NAI sing 327 n n N7N H72N NAI sing 328 n n C4N C5N NAI sing 329 n n C4N H4N NAI sing 330 n n C4N H42N NAI sing 331 n n C5N C6N NAI doub 332 n n C5N H5N NAI sing 333 n n C6N H6N NAI sing 334 n n # _atom_sites.entry_id 7JSO _atom_sites.fract_transf_matrix[1][1] 0.002996 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.006208 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.011765 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code I 2 NAI A 1 700 700 NAI NAI . J 3 IAC A 1 701 701 IAC IAA . K 2 NAI B 1 700 700 NAI NAI . L 3 IAC B 1 701 701 IAC IAA . M 2 NAI C 1 700 700 NAI NAI . N 3 IAC C 1 701 701 IAC IAA . O 2 NAI D 1 700 700 NAI NAI . P 3 IAC D 1 701 701 IAC IAA . Q 2 NAI E 1 700 700 NAI NAI . R 3 IAC E 1 701 701 IAC IAA . S 2 NAI F 1 700 700 NAI NAI . T 3 IAC F 1 701 701 IAC IAA . U 2 NAI G 1 700 700 NAI NAI . V 3 IAC G 1 701 701 IAC IAA . W 2 NAI H 1 700 700 NAI NAI . X 3 IAC H 1 701 701 IAC IAA . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PA NAI . . . I 2 364.038 63.837 28.832 1 50.15 ? PA NAI 700 A 1 HETATM 2 O O1A NAI . . . I 2 363.865 62.334 29.264 1 45.05 ? O1A NAI 700 A 1 HETATM 3 O O2A NAI . . . I 2 365.448 64.121 28.295 1 40.92 ? O2A NAI 700 A 1 HETATM 4 O O5B NAI . . . I 2 363.631 64.936 29.984 1 48.59 ? O5B NAI 700 A 1 HETATM 5 C C5B NAI . . . I 2 362.584 64.711 30.915 1 45.68 ? C5B NAI 700 A 1 HETATM 6 C C4B NAI . . . I 2 362.814 65.397 32.34 1 43.57 ? C4B NAI 700 A 1 HETATM 7 O O4B NAI . . . I 2 363.834 64.525 33.197 1 40.17 ? O4B NAI 700 A 1 HETATM 8 C C3B NAI . . . I 2 363.354 66.567 32.357 1 44.61 ? C3B NAI 700 A 1 HETATM 9 O O3B NAI . . . I 2 362.889 67.361 33.578 1 30.71 ? O3B NAI 700 A 1 HETATM 10 C C2B NAI . . . I 2 364.912 66.311 32.356 1 38.98 ? C2B NAI 700 A 1 HETATM 11 O O2B NAI . . . I 2 365.624 67.019 33.331 1 38.89 ? O2B NAI 700 A 1 HETATM 12 C C1B NAI . . . I 2 364.914 64.828 32.555 1 39.31 ? C1B NAI 700 A 1 HETATM 13 N N9A NAI . . . I 2 366.189 64.056 32.988 1 33.38 ? N9A NAI 700 A 1 HETATM 14 C C8A NAI . . . I 2 367.191 63.909 32.13 1 31.05 ? C8A NAI 700 A 1 HETATM 15 N N7A NAI . . . I 2 368.139 63.167 32.676 1 31.64 ? N7A NAI 700 A 1 HETATM 16 C C5A NAI . . . I 2 367.73 62.797 33.906 1 27.31 ? C5A NAI 700 A 1 HETATM 17 C C6A NAI . . . I 2 368.344 62.015 34.901 1 23.39 ? C6A NAI 700 A 1 HETATM 18 N N6A NAI . . . I 2 369.678 61.486 34.603 1 18.88 ? N6A NAI 700 A 1 HETATM 19 N N1A NAI . . . I 2 367.676 61.803 36.08 1 17.13 ? N1A NAI 700 A 1 HETATM 20 C C2A NAI . . . I 2 366.445 62.338 36.269 1 14.62 ? C2A NAI 700 A 1 HETATM 21 N N3A NAI . . . I 2 365.838 63.092 35.329 1 21.62 ? N3A NAI 700 A 1 HETATM 22 C C4A NAI . . . I 2 366.464 63.341 34.126 1 27 ? C4A NAI 700 A 1 HETATM 23 O O3 NAI . . . I 2 362.905 64.099 27.628 1 62.02 ? O3 NAI 700 A 1 HETATM 24 P PN NAI . . . I 2 362.972 65.463 26.738 1 75.17 ? PN NAI 700 A 1 HETATM 25 O O1N NAI . . . I 2 364.302 66.124 26.909 1 77.09 ? O1N NAI 700 A 1 HETATM 26 O O2N NAI . . . I 2 361.878 66.274 27.222 1 68 ? O2N NAI 700 A 1 HETATM 27 O O5D NAI . . . I 2 362.8 64.993 25.207 1 87.46 ? O5D NAI 700 A 1 HETATM 28 C C5D NAI . . . I 2 363.817 64.064 24.629 1 91.68 ? C5D NAI 700 A 1 HETATM 29 C C4D NAI . . . I 2 363.308 62.924 24.057 1 98.1 ? C4D NAI 700 A 1 HETATM 30 O O4D NAI . . . I 2 362.106 62.233 24.826 1 106.45 ? O4D NAI 700 A 1 HETATM 31 C C3D NAI . . . I 2 362.775 63.159 22.624 1 101.92 ? C3D NAI 700 A 1 HETATM 32 O O3D NAI . . . I 2 362.516 64.612 22.416 1 104.58 ? O3D NAI 700 A 1 HETATM 33 C C2D NAI . . . I 2 361.723 62.299 22.541 1 105.04 ? C2D NAI 700 A 1 HETATM 34 O O2D NAI . . . I 2 360.787 62.559 21.422 1 105.58 ? O2D NAI 700 A 1 HETATM 35 C C1D NAI . . . I 2 361.061 61.96 24.037 1 99.81 ? C1D NAI 700 A 1 HETATM 36 N N1N NAI . . . I 2 359.914 62.55 24.803 1 87.29 ? N1N NAI 700 A 1 HETATM 37 C C2N NAI . . . I 2 358.819 61.806 25.152 1 81.53 ? C2N NAI 700 A 1 HETATM 38 C C3N NAI . . . I 2 357.794 62.402 25.967 1 82.12 ? C3N NAI 700 A 1 HETATM 39 C C7N NAI . . . I 2 356.434 61.654 26.417 1 83.43 ? C7N NAI 700 A 1 HETATM 40 O O7N NAI . . . I 2 355.503 62.302 26.744 1 76.1 ? O7N NAI 700 A 1 HETATM 41 N N7N NAI . . . I 2 356.339 60.134 26.453 1 84.65 ? N7N NAI 700 A 1 HETATM 42 C C4N NAI . . . I 2 357.943 63.695 26.429 1 82.66 ? C4N NAI 700 A 1 HETATM 43 C C5N NAI . . . I 2 359.113 64.413 26.086 1 85.85 ? C5N NAI 700 A 1 HETATM 44 C C6N NAI . . . I 2 360.081 63.775 25.283 1 88.82 ? C6N NAI 700 A 1 # _model_server_stats.io_time_ms 61 _model_server_stats.parse_time_ms 17 _model_server_stats.create_model_time_ms 53 _model_server_stats.query_time_ms 306 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 44 #