data_7JSU # _model_server_result.job_id pwm5VOJFhm6P69QisUmJFQ _model_server_result.datetime_utc '2024-11-01 15:25:48' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7jsu # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":401}' # _entry.id 7JSU # _exptl.entry_id 7JSU _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 405.488 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description N~2~-[(benzyloxy)carbonyl]-N-{(2S)-1-hydroxy-3-[(3S)-2-oxopyrrolidin-3-yl]propan-2-yl}-L-leucinamide _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 114.31 _cell.angle_gamma 90 _cell.entry_id 7JSU _cell.length_a 98.83 _cell.length_b 80.225 _cell.length_c 51.99 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7JSU _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 1 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_557 -x,y,-z+2 -1 0 0 0 1 0 0 0 -1 -42.805802 0 94.760243 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _struct_conn.conn_type_id covale _struct_conn.details ? _struct_conn.id covale1 _struct_conn.ptnr1_label_asym_id A _struct_conn.ptnr1_label_atom_id SG _struct_conn.ptnr1_label_comp_id CYS _struct_conn.ptnr1_label_seq_id 145 _struct_conn.ptnr1_auth_asym_id A _struct_conn.ptnr1_auth_comp_id CYS _struct_conn.ptnr1_auth_seq_id 145 _struct_conn.ptnr1_symmetry 1_555 _struct_conn.ptnr2_label_asym_id B _struct_conn.ptnr2_label_atom_id C21 _struct_conn.ptnr2_label_comp_id UED _struct_conn.ptnr2_label_seq_id . _struct_conn.ptnr2_auth_asym_id A _struct_conn.ptnr2_auth_comp_id UED _struct_conn.ptnr2_auth_seq_id 401 _struct_conn.ptnr2_symmetry 1_555 _struct_conn.pdbx_ptnr1_PDB_ins_code ? _struct_conn.pdbx_ptnr1_label_alt_id ? _struct_conn.pdbx_ptnr1_standard_comp_id ? _struct_conn.pdbx_ptnr2_PDB_ins_code ? _struct_conn.pdbx_ptnr2_label_alt_id ? _struct_conn.pdbx_ptnr3_PDB_ins_code ? _struct_conn.pdbx_ptnr3_label_alt_id ? _struct_conn.pdbx_ptnr3_label_asym_id ? _struct_conn.pdbx_ptnr3_label_atom_id ? _struct_conn.pdbx_ptnr3_label_comp_id ? _struct_conn.pdbx_ptnr3_label_seq_id ? _struct_conn.pdbx_PDB_id ? _struct_conn.pdbx_dist_value 1.774 _struct_conn.pdbx_value_order ? # _chem_comp.formula 'C21 H31 N3 O5' _chem_comp.formula_weight 405.488 _chem_comp.id UED _chem_comp.mon_nstd_flag . _chem_comp.name N~2~-[(benzyloxy)carbonyl]-N-{(2S)-1-hydroxy-3-[(3S)-2-oxopyrrolidin-3-yl]propan-2-yl}-L-leucinamide _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'GC373 bound form, GC376 bound form' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C16 C14 UED sing 362 n n C3 C2 UED doub 363 n y C3 C4 UED sing 364 n y C2 C1 UED sing 365 n y C14 C13 UED sing 366 n n C14 C15 UED sing 367 n n C13 C12 UED sing 368 n n C4 C5 UED doub 369 n y O8 C7 UED sing 370 n n O8 C9 UED sing 371 n n N11 C12 UED sing 372 n n N11 C9 UED sing 373 n n C1 C7 UED sing 374 n n C1 C6 UED doub 375 n y O18 C17 UED doub 376 n n C5 C6 UED sing 377 n y C12 C17 UED sing 378 n n C9 O10 UED doub 379 n n C17 N19 UED sing 380 n n C26 C27 UED sing 381 n n C26 C25 UED sing 382 n n N19 C20 UED sing 383 n n C20 C21 UED sing 384 n n C20 C24 UED sing 385 n n C27 N28 UED sing 386 n n O22 C21 UED sing 387 n n C25 C24 UED sing 388 n n C25 C29 UED sing 389 n n N28 C29 UED sing 390 n n C29 O30 UED doub 391 n n C7 H1 UED sing 392 n n C7 H2 UED sing 393 n n C2 H3 UED sing 394 n n C3 H4 UED sing 395 n n C4 H5 UED sing 396 n n C5 H6 UED sing 397 n n C6 H7 UED sing 398 n n N11 H8 UED sing 399 n n C12 H9 UED sing 400 n n C13 H10 UED sing 401 n n C13 H11 UED sing 402 n n C14 H12 UED sing 403 n n C15 H13 UED sing 404 n n C15 H14 UED sing 405 n n C15 H15 UED sing 406 n n C16 H16 UED sing 407 n n C16 H17 UED sing 408 n n C16 H18 UED sing 409 n n N19 H19 UED sing 410 n n C20 H20 UED sing 411 n n C24 H21 UED sing 412 n n C24 H22 UED sing 413 n n C25 H23 UED sing 414 n n C26 H24 UED sing 415 n n C26 H25 UED sing 416 n n C27 H26 UED sing 417 n n C27 H27 UED sing 418 n n N28 H28 UED sing 419 n n C21 H29 UED sing 420 n n C21 H30 UED sing 421 n n O22 H31 UED sing 422 n n # _atom_sites.entry_id 7JSU _atom_sites.fract_transf_matrix[1][1] 0.010118 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.004571 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.012465 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.021106 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 UED A 1 401 401 UED GC3 . C 3 PO4 A 1 402 402 PO4 PO4 . D 3 PO4 A 1 403 403 PO4 PO4 . E 4 HOH A 1 501 173 HOH HOH . E 4 HOH A 2 502 155 HOH HOH . E 4 HOH A 3 503 149 HOH HOH . E 4 HOH A 4 504 175 HOH HOH . E 4 HOH A 5 505 109 HOH HOH . E 4 HOH A 6 506 122 HOH HOH . E 4 HOH A 7 507 167 HOH HOH . E 4 HOH A 8 508 77 HOH HOH . E 4 HOH A 9 509 115 HOH HOH . E 4 HOH A 10 510 174 HOH HOH . E 4 HOH A 11 511 100 HOH HOH . E 4 HOH A 12 512 160 HOH HOH . E 4 HOH A 13 513 14 HOH HOH . E 4 HOH A 14 514 78 HOH HOH . E 4 HOH A 15 515 70 HOH HOH . E 4 HOH A 16 516 20 HOH HOH . E 4 HOH A 17 517 31 HOH HOH . E 4 HOH A 18 518 24 HOH HOH . E 4 HOH A 19 519 159 HOH HOH . E 4 HOH A 20 520 34 HOH HOH . E 4 HOH A 21 521 117 HOH HOH . E 4 HOH A 22 522 83 HOH HOH . E 4 HOH A 23 523 152 HOH HOH . E 4 HOH A 24 524 12 HOH HOH . E 4 HOH A 25 525 5 HOH HOH . E 4 HOH A 26 526 183 HOH HOH . E 4 HOH A 27 527 44 HOH HOH . E 4 HOH A 28 528 170 HOH HOH . E 4 HOH A 29 529 156 HOH HOH . E 4 HOH A 30 530 87 HOH HOH . E 4 HOH A 31 531 25 HOH HOH . E 4 HOH A 32 532 166 HOH HOH . E 4 HOH A 33 533 21 HOH HOH . E 4 HOH A 34 534 85 HOH HOH . E 4 HOH A 35 535 22 HOH HOH . E 4 HOH A 36 536 89 HOH HOH . E 4 HOH A 37 537 139 HOH HOH . E 4 HOH A 38 538 76 HOH HOH . E 4 HOH A 39 539 177 HOH HOH . E 4 HOH A 40 540 142 HOH HOH . E 4 HOH A 41 541 54 HOH HOH . E 4 HOH A 42 542 101 HOH HOH . E 4 HOH A 43 543 4 HOH HOH . E 4 HOH A 44 544 88 HOH HOH . E 4 HOH A 45 545 153 HOH HOH . E 4 HOH A 46 546 168 HOH HOH . E 4 HOH A 47 547 72 HOH HOH . E 4 HOH A 48 548 118 HOH HOH . E 4 HOH A 49 549 11 HOH HOH . E 4 HOH A 50 550 17 HOH HOH . E 4 HOH A 51 551 169 HOH HOH . E 4 HOH A 52 552 65 HOH HOH . E 4 HOH A 53 553 9 HOH HOH . E 4 HOH A 54 554 30 HOH HOH . E 4 HOH A 55 555 110 HOH HOH . E 4 HOH A 56 556 23 HOH HOH . E 4 HOH A 57 557 46 HOH HOH . E 4 HOH A 58 558 60 HOH HOH . E 4 HOH A 59 559 179 HOH HOH . E 4 HOH A 60 560 61 HOH HOH . E 4 HOH A 61 561 114 HOH HOH . E 4 HOH A 62 562 125 HOH HOH . E 4 HOH A 63 563 129 HOH HOH . E 4 HOH A 64 564 6 HOH HOH . E 4 HOH A 65 565 134 HOH HOH . E 4 HOH A 66 566 62 HOH HOH . E 4 HOH A 67 567 26 HOH HOH . E 4 HOH A 68 568 47 HOH HOH . E 4 HOH A 69 569 97 HOH HOH . E 4 HOH A 70 570 7 HOH HOH . E 4 HOH A 71 571 1 HOH HOH . E 4 HOH A 72 572 38 HOH HOH . E 4 HOH A 73 573 36 HOH HOH . E 4 HOH A 74 574 171 HOH HOH . E 4 HOH A 75 575 138 HOH HOH . E 4 HOH A 76 576 35 HOH HOH . E 4 HOH A 77 577 104 HOH HOH . E 4 HOH A 78 578 8 HOH HOH . E 4 HOH A 79 579 81 HOH HOH . E 4 HOH A 80 580 27 HOH HOH . E 4 HOH A 81 581 28 HOH HOH . E 4 HOH A 82 582 182 HOH HOH . E 4 HOH A 83 583 49 HOH HOH . E 4 HOH A 84 584 145 HOH HOH . E 4 HOH A 85 585 3 HOH HOH . E 4 HOH A 86 586 123 HOH HOH . E 4 HOH A 87 587 37 HOH HOH . E 4 HOH A 88 588 39 HOH HOH . E 4 HOH A 89 589 74 HOH HOH . E 4 HOH A 90 590 18 HOH HOH . E 4 HOH A 91 591 94 HOH HOH . E 4 HOH A 92 592 67 HOH HOH . E 4 HOH A 93 593 58 HOH HOH . E 4 HOH A 94 594 90 HOH HOH . E 4 HOH A 95 595 103 HOH HOH . E 4 HOH A 96 596 43 HOH HOH . E 4 HOH A 97 597 68 HOH HOH . E 4 HOH A 98 598 158 HOH HOH . E 4 HOH A 99 599 73 HOH HOH . E 4 HOH A 100 600 91 HOH HOH . E 4 HOH A 101 601 99 HOH HOH . E 4 HOH A 102 602 108 HOH HOH . E 4 HOH A 103 603 137 HOH HOH . E 4 HOH A 104 604 16 HOH HOH . E 4 HOH A 105 605 120 HOH HOH . E 4 HOH A 106 606 82 HOH HOH . E 4 HOH A 107 607 111 HOH HOH . E 4 HOH A 108 608 119 HOH HOH . E 4 HOH A 109 609 52 HOH HOH . E 4 HOH A 110 610 13 HOH HOH . E 4 HOH A 111 611 84 HOH HOH . E 4 HOH A 112 612 121 HOH HOH . E 4 HOH A 113 613 33 HOH HOH . E 4 HOH A 114 614 15 HOH HOH . E 4 HOH A 115 615 45 HOH HOH . E 4 HOH A 116 616 32 HOH HOH . E 4 HOH A 117 617 86 HOH HOH . E 4 HOH A 118 618 113 HOH HOH . E 4 HOH A 119 619 143 HOH HOH . E 4 HOH A 120 620 2 HOH HOH . E 4 HOH A 121 621 42 HOH HOH . E 4 HOH A 122 622 56 HOH HOH . E 4 HOH A 123 623 180 HOH HOH . E 4 HOH A 124 624 79 HOH HOH . E 4 HOH A 125 625 95 HOH HOH . E 4 HOH A 126 626 40 HOH HOH . E 4 HOH A 127 627 106 HOH HOH . E 4 HOH A 128 628 141 HOH HOH . E 4 HOH A 129 629 150 HOH HOH . E 4 HOH A 130 630 19 HOH HOH . E 4 HOH A 131 631 136 HOH HOH . E 4 HOH A 132 632 75 HOH HOH . E 4 HOH A 133 633 29 HOH HOH . E 4 HOH A 134 634 181 HOH HOH . E 4 HOH A 135 635 63 HOH HOH . E 4 HOH A 136 636 164 HOH HOH . E 4 HOH A 137 637 41 HOH HOH . E 4 HOH A 138 638 148 HOH HOH . E 4 HOH A 139 639 55 HOH HOH . E 4 HOH A 140 640 146 HOH HOH . E 4 HOH A 141 641 151 HOH HOH . E 4 HOH A 142 642 80 HOH HOH . E 4 HOH A 143 643 92 HOH HOH . E 4 HOH A 144 644 98 HOH HOH . E 4 HOH A 145 645 10 HOH HOH . E 4 HOH A 146 646 133 HOH HOH . E 4 HOH A 147 647 124 HOH HOH . E 4 HOH A 148 648 172 HOH HOH . E 4 HOH A 149 649 135 HOH HOH . E 4 HOH A 150 650 107 HOH HOH . E 4 HOH A 151 651 93 HOH HOH . E 4 HOH A 152 652 64 HOH HOH . E 4 HOH A 153 653 147 HOH HOH . E 4 HOH A 154 654 48 HOH HOH . E 4 HOH A 155 655 131 HOH HOH . E 4 HOH A 156 656 127 HOH HOH . E 4 HOH A 157 657 128 HOH HOH . E 4 HOH A 158 658 154 HOH HOH . E 4 HOH A 159 659 161 HOH HOH . E 4 HOH A 160 660 163 HOH HOH . E 4 HOH A 161 661 157 HOH HOH . E 4 HOH A 162 662 165 HOH HOH . E 4 HOH A 163 663 59 HOH HOH . E 4 HOH A 164 664 162 HOH HOH . E 4 HOH A 165 665 105 HOH HOH . E 4 HOH A 166 666 53 HOH HOH . E 4 HOH A 167 667 112 HOH HOH . E 4 HOH A 168 668 132 HOH HOH . E 4 HOH A 169 669 50 HOH HOH . E 4 HOH A 170 670 66 HOH HOH . E 4 HOH A 171 671 71 HOH HOH . E 4 HOH A 172 672 69 HOH HOH . E 4 HOH A 173 673 102 HOH HOH . E 4 HOH A 174 674 116 HOH HOH . E 4 HOH A 175 675 57 HOH HOH . E 4 HOH A 176 676 96 HOH HOH . E 4 HOH A 177 677 130 HOH HOH . E 4 HOH A 178 678 178 HOH HOH . E 4 HOH A 179 679 144 HOH HOH . E 4 HOH A 180 680 140 HOH HOH . E 4 HOH A 181 681 51 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C7 UED . . . B 2 -10.743 9.564 69.175 1 40.47 ? C7 UED 401 A 1 HETATM 2 O O8 UED . . . B 2 -10.647 10.693 70.003 1 37.09 ? O8 UED 401 A 1 HETATM 3 C C9 UED . . . B 2 -11.392 11.716 69.625 1 39.85 ? C9 UED 401 A 1 HETATM 4 O O10 UED . . . B 2 -12.022 11.659 68.605 1 32.58 ? O10 UED 401 A 1 HETATM 5 C C1 UED . . . B 2 -9.699 9.564 68.047 1 41.68 ? C1 UED 401 A 1 HETATM 6 C C2 UED . . . B 2 -8.789 10.612 67.891 1 43.63 ? C2 UED 401 A 1 HETATM 7 C C3 UED . . . B 2 -7.849 10.582 66.863 1 52.5 ? C3 UED 401 A 1 HETATM 8 C C4 UED . . . B 2 -7.819 9.503 65.979 1 54.36 ? C4 UED 401 A 1 HETATM 9 C C5 UED . . . B 2 -8.726 8.456 66.133 1 48.81 ? C5 UED 401 A 1 HETATM 10 C C6 UED . . . B 2 -9.661 8.489 67.165 1 40.75 ? C6 UED 401 A 1 HETATM 11 N N11 UED . . . B 2 -11.395 12.796 70.406 1 34.33 ? N11 UED 401 A 1 HETATM 12 C C12 UED . . . B 2 -11.987 14.055 69.993 1 29.13 ? C12 UED 401 A 1 HETATM 13 C C17 UED . . . B 2 -11.322 14.55 68.706 1 37.33 ? C17 UED 401 A 1 HETATM 14 O O18 UED . . . B 2 -10.147 14.46 68.539 1 38.15 ? O18 UED 401 A 1 HETATM 15 C C13 UED . . . B 2 -11.819 15.121 71.087 1 29.22 ? C13 UED 401 A 1 HETATM 16 C C14 UED . . . B 2 -12.376 14.653 72.434 1 35.74 ? C14 UED 401 A 1 HETATM 17 C C15 UED . . . B 2 -12.078 15.741 73.468 1 34.01 ? C15 UED 401 A 1 HETATM 18 C C16 UED . . . B 2 -13.883 14.446 72.358 1 37.93 ? C16 UED 401 A 1 HETATM 19 N N19 UED . . . B 2 -12.103 15.068 67.764 1 32.54 ? N19 UED 401 A 1 HETATM 20 C C20 UED . . . B 2 -11.571 15.558 66.508 1 28.79 ? C20 UED 401 A 1 HETATM 21 C C21 UED . . . B 2 -11.929 17.042 66.444 1 34.58 ? C21 UED 401 A 1 HETATM 22 O O22 UED . . . B 2 -11.317 17.662 65.354 1 41.72 ? O22 UED 401 A 1 HETATM 23 C C24 UED . . . B 2 -12.216 14.75 65.363 1 24.75 ? C24 UED 401 A 1 HETATM 24 C C25 UED . . . B 2 -11.657 13.289 65.408 1 26.84 ? C25 UED 401 A 1 HETATM 25 C C26 UED . . . B 2 -10.159 13.291 65.152 1 33.76 ? C26 UED 401 A 1 HETATM 26 C C27 UED . . . B 2 -9.948 12.061 64.254 1 30.26 ? C27 UED 401 A 1 HETATM 27 N N28 UED . . . B 2 -11.335 11.748 63.654 1 30.54 ? N28 UED 401 A 1 HETATM 28 C C29 UED . . . B 2 -12.288 12.437 64.292 1 33.95 ? C29 UED 401 A 1 HETATM 29 O O30 UED . . . B 2 -13.445 12.39 64.05 1 32.71 ? O30 UED 401 A 1 # _model_server_stats.io_time_ms 69 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 5 _model_server_stats.query_time_ms 298 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 29 #