data_7JSY # _model_server_result.job_id tKavuWQPANVbr8IOzFXOKQ _model_server_result.datetime_utc '2024-11-07 22:48:01' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7jsy # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":503}' # _entry.id 7JSY # _exptl.entry_id 7JSY _exptl.method 'ELECTRON CRYSTALLOGRAPHY' # _entity.details ? _entity.formula_weight 558.835 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '5-amino-2,4,6-triiodobenzene-1,3-dicarboxylic acid' _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 7JSY _cell.length_a 67.555 _cell.length_b 67.555 _cell.length_c 102.773 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7JSY _symmetry.cell_setting ? _symmetry.Int_Tables_number 96 _symmetry.space_group_name_Hall 'P 4nw 2abw' _symmetry.space_group_name_H-M 'P 43 21 2' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 B N N ? 2 C N N ? 2 D N N ? 2 E N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 34 A CYS 139 1_555 A SG CYS 123 A CYS 228 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.01 ? disulf ? disulf2 A SG CYS 178 A CYS 283 1_555 A SG CYS 249 A CYS 354 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.026 ? # _chem_comp.formula 'C8 H4 I3 N O4' _chem_comp.formula_weight 558.835 _chem_comp.id I3C _chem_comp.mon_nstd_flag . _chem_comp.name '5-amino-2,4,6-triiodobenzene-1,3-dicarboxylic acid' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms '5-Amino-2,4,6-triiodoisophthalic acid' # _atom_sites.entry_id 7JSY _atom_sites.fract_transf_matrix[1][1] 0.014803 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.014803 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.00973 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 I3C A 1 501 501 I3C I3C . C 2 I3C A 1 502 601 I3C I3C . D 2 I3C A 1 503 701 I3C I3C . E 2 I3C A 1 504 801 I3C I3C . F 3 HOH A 1 601 237 HOH HOH . F 3 HOH A 2 602 203 HOH HOH . F 3 HOH A 3 603 48 HOH HOH . F 3 HOH A 4 604 243 HOH HOH . F 3 HOH A 5 605 160 HOH HOH . F 3 HOH A 6 606 61 HOH HOH . F 3 HOH A 7 607 176 HOH HOH . F 3 HOH A 8 608 19 HOH HOH . F 3 HOH A 9 609 233 HOH HOH . F 3 HOH A 10 610 218 HOH HOH . F 3 HOH A 11 611 32 HOH HOH . F 3 HOH A 12 612 94 HOH HOH . F 3 HOH A 13 613 20 HOH HOH . F 3 HOH A 14 614 73 HOH HOH . F 3 HOH A 15 615 10 HOH HOH . F 3 HOH A 16 616 49 HOH HOH . F 3 HOH A 17 617 7 HOH HOH . F 3 HOH A 18 618 151 HOH HOH . F 3 HOH A 19 619 16 HOH HOH . F 3 HOH A 20 620 60 HOH HOH . F 3 HOH A 21 621 42 HOH HOH . F 3 HOH A 22 622 168 HOH HOH . F 3 HOH A 23 623 104 HOH HOH . F 3 HOH A 24 624 98 HOH HOH . F 3 HOH A 25 625 66 HOH HOH . F 3 HOH A 26 626 140 HOH HOH . F 3 HOH A 27 627 57 HOH HOH . F 3 HOH A 28 628 112 HOH HOH . F 3 HOH A 29 629 69 HOH HOH . F 3 HOH A 30 630 232 HOH HOH . F 3 HOH A 31 631 41 HOH HOH . F 3 HOH A 32 632 38 HOH HOH . F 3 HOH A 33 633 46 HOH HOH . F 3 HOH A 34 634 118 HOH HOH . F 3 HOH A 35 635 15 HOH HOH . F 3 HOH A 36 636 21 HOH HOH . F 3 HOH A 37 637 125 HOH HOH . F 3 HOH A 38 638 2 HOH HOH . F 3 HOH A 39 639 6 HOH HOH . F 3 HOH A 40 640 178 HOH HOH . F 3 HOH A 41 641 30 HOH HOH . F 3 HOH A 42 642 115 HOH HOH . F 3 HOH A 43 643 12 HOH HOH . F 3 HOH A 44 644 4 HOH HOH . F 3 HOH A 45 645 123 HOH HOH . F 3 HOH A 46 646 226 HOH HOH . F 3 HOH A 47 647 18 HOH HOH . F 3 HOH A 48 648 191 HOH HOH . F 3 HOH A 49 649 88 HOH HOH . F 3 HOH A 50 650 149 HOH HOH . F 3 HOH A 51 651 3 HOH HOH . F 3 HOH A 52 652 22 HOH HOH . F 3 HOH A 53 653 31 HOH HOH . F 3 HOH A 54 654 83 HOH HOH . F 3 HOH A 55 655 55 HOH HOH . F 3 HOH A 56 656 54 HOH HOH . F 3 HOH A 57 657 25 HOH HOH . F 3 HOH A 58 658 29 HOH HOH . F 3 HOH A 59 659 9 HOH HOH . F 3 HOH A 60 660 80 HOH HOH . F 3 HOH A 61 661 131 HOH HOH . F 3 HOH A 62 662 139 HOH HOH . F 3 HOH A 63 663 101 HOH HOH . F 3 HOH A 64 664 195 HOH HOH . F 3 HOH A 65 665 74 HOH HOH . F 3 HOH A 66 666 34 HOH HOH . F 3 HOH A 67 667 79 HOH HOH . F 3 HOH A 68 668 50 HOH HOH . F 3 HOH A 69 669 75 HOH HOH . F 3 HOH A 70 670 133 HOH HOH . F 3 HOH A 71 671 100 HOH HOH . F 3 HOH A 72 672 106 HOH HOH . F 3 HOH A 73 673 86 HOH HOH . F 3 HOH A 74 674 56 HOH HOH . F 3 HOH A 75 675 97 HOH HOH . F 3 HOH A 76 676 59 HOH HOH . F 3 HOH A 77 677 70 HOH HOH . F 3 HOH A 78 678 209 HOH HOH . F 3 HOH A 79 679 23 HOH HOH . F 3 HOH A 80 680 85 HOH HOH . F 3 HOH A 81 681 71 HOH HOH . F 3 HOH A 82 682 44 HOH HOH . F 3 HOH A 83 683 62 HOH HOH . F 3 HOH A 84 684 45 HOH HOH . F 3 HOH A 85 685 196 HOH HOH . F 3 HOH A 86 686 170 HOH HOH . F 3 HOH A 87 687 190 HOH HOH . F 3 HOH A 88 688 13 HOH HOH . F 3 HOH A 89 689 214 HOH HOH . F 3 HOH A 90 690 39 HOH HOH . F 3 HOH A 91 691 78 HOH HOH . F 3 HOH A 92 692 17 HOH HOH . F 3 HOH A 93 693 174 HOH HOH . F 3 HOH A 94 694 91 HOH HOH . F 3 HOH A 95 695 35 HOH HOH . F 3 HOH A 96 696 166 HOH HOH . F 3 HOH A 97 697 47 HOH HOH . F 3 HOH A 98 698 8 HOH HOH . F 3 HOH A 99 699 27 HOH HOH . F 3 HOH A 100 700 92 HOH HOH . F 3 HOH A 101 701 11 HOH HOH . F 3 HOH A 102 702 95 HOH HOH . F 3 HOH A 103 703 5 HOH HOH . F 3 HOH A 104 704 36 HOH HOH . F 3 HOH A 105 705 211 HOH HOH . F 3 HOH A 106 706 81 HOH HOH . F 3 HOH A 107 707 201 HOH HOH . F 3 HOH A 108 708 87 HOH HOH . F 3 HOH A 109 709 185 HOH HOH . F 3 HOH A 110 710 63 HOH HOH . F 3 HOH A 111 711 138 HOH HOH . F 3 HOH A 112 712 64 HOH HOH . F 3 HOH A 113 713 156 HOH HOH . F 3 HOH A 114 714 146 HOH HOH . F 3 HOH A 115 715 164 HOH HOH . F 3 HOH A 116 716 24 HOH HOH . F 3 HOH A 117 717 136 HOH HOH . F 3 HOH A 118 718 1 HOH HOH . F 3 HOH A 119 719 99 HOH HOH . F 3 HOH A 120 720 53 HOH HOH . F 3 HOH A 121 721 72 HOH HOH . F 3 HOH A 122 722 154 HOH HOH . F 3 HOH A 123 723 51 HOH HOH . F 3 HOH A 124 724 172 HOH HOH . F 3 HOH A 125 725 134 HOH HOH . F 3 HOH A 126 726 14 HOH HOH . F 3 HOH A 127 727 117 HOH HOH . F 3 HOH A 128 728 229 HOH HOH . F 3 HOH A 129 729 192 HOH HOH . F 3 HOH A 130 730 198 HOH HOH . F 3 HOH A 131 731 40 HOH HOH . F 3 HOH A 132 732 109 HOH HOH . F 3 HOH A 133 733 111 HOH HOH . F 3 HOH A 134 734 204 HOH HOH . F 3 HOH A 135 735 28 HOH HOH . F 3 HOH A 136 736 33 HOH HOH . F 3 HOH A 137 737 84 HOH HOH . F 3 HOH A 138 738 158 HOH HOH . F 3 HOH A 139 739 217 HOH HOH . F 3 HOH A 140 740 163 HOH HOH . F 3 HOH A 141 741 43 HOH HOH . F 3 HOH A 142 742 93 HOH HOH . F 3 HOH A 143 743 52 HOH HOH . F 3 HOH A 144 744 89 HOH HOH . F 3 HOH A 145 745 186 HOH HOH . F 3 HOH A 146 746 65 HOH HOH . F 3 HOH A 147 747 58 HOH HOH . F 3 HOH A 148 748 129 HOH HOH . F 3 HOH A 149 749 239 HOH HOH . F 3 HOH A 150 750 180 HOH HOH . F 3 HOH A 151 751 242 HOH HOH . F 3 HOH A 152 752 82 HOH HOH . F 3 HOH A 153 753 110 HOH HOH . F 3 HOH A 154 754 200 HOH HOH . F 3 HOH A 155 755 137 HOH HOH . F 3 HOH A 156 756 231 HOH HOH . F 3 HOH A 157 757 103 HOH HOH . F 3 HOH A 158 758 37 HOH HOH . F 3 HOH A 159 759 114 HOH HOH . F 3 HOH A 160 760 235 HOH HOH . F 3 HOH A 161 761 120 HOH HOH . F 3 HOH A 162 762 169 HOH HOH . F 3 HOH A 163 763 132 HOH HOH . F 3 HOH A 164 764 212 HOH HOH . F 3 HOH A 165 765 108 HOH HOH . F 3 HOH A 166 766 155 HOH HOH . F 3 HOH A 167 767 26 HOH HOH . F 3 HOH A 168 768 202 HOH HOH . F 3 HOH A 169 769 215 HOH HOH . F 3 HOH A 170 770 188 HOH HOH . F 3 HOH A 171 771 128 HOH HOH . F 3 HOH A 172 772 210 HOH HOH . F 3 HOH A 173 773 208 HOH HOH . F 3 HOH A 174 774 213 HOH HOH . F 3 HOH A 175 775 187 HOH HOH . F 3 HOH A 176 776 152 HOH HOH . F 3 HOH A 177 777 105 HOH HOH . F 3 HOH A 178 778 184 HOH HOH . F 3 HOH A 179 779 165 HOH HOH . F 3 HOH A 180 780 246 HOH HOH . F 3 HOH A 181 781 179 HOH HOH . F 3 HOH A 182 782 177 HOH HOH . F 3 HOH A 183 783 193 HOH HOH . F 3 HOH A 184 784 124 HOH HOH . F 3 HOH A 185 785 171 HOH HOH . F 3 HOH A 186 786 68 HOH HOH . F 3 HOH A 187 787 173 HOH HOH . F 3 HOH A 188 788 221 HOH HOH . F 3 HOH A 189 789 245 HOH HOH . F 3 HOH A 190 790 130 HOH HOH . F 3 HOH A 191 791 241 HOH HOH . F 3 HOH A 192 792 238 HOH HOH . F 3 HOH A 193 793 181 HOH HOH . F 3 HOH A 194 794 121 HOH HOH . F 3 HOH A 195 795 77 HOH HOH . F 3 HOH A 196 796 102 HOH HOH . F 3 HOH A 197 797 183 HOH HOH . F 3 HOH A 198 798 175 HOH HOH . F 3 HOH A 199 799 142 HOH HOH . F 3 HOH A 200 800 144 HOH HOH . F 3 HOH A 201 801 236 HOH HOH . F 3 HOH A 202 802 122 HOH HOH . F 3 HOH A 203 803 167 HOH HOH . F 3 HOH A 204 804 199 HOH HOH . F 3 HOH A 205 805 159 HOH HOH . F 3 HOH A 206 806 225 HOH HOH . F 3 HOH A 207 807 223 HOH HOH . F 3 HOH A 208 808 116 HOH HOH . F 3 HOH A 209 809 228 HOH HOH . F 3 HOH A 210 810 96 HOH HOH . F 3 HOH A 211 811 113 HOH HOH . F 3 HOH A 212 812 197 HOH HOH . F 3 HOH A 213 813 205 HOH HOH . F 3 HOH A 214 814 230 HOH HOH . F 3 HOH A 215 815 127 HOH HOH . F 3 HOH A 216 816 240 HOH HOH . F 3 HOH A 217 817 162 HOH HOH . F 3 HOH A 218 818 219 HOH HOH . F 3 HOH A 219 819 141 HOH HOH . F 3 HOH A 220 820 67 HOH HOH . F 3 HOH A 221 821 126 HOH HOH . F 3 HOH A 222 822 220 HOH HOH . F 3 HOH A 223 823 147 HOH HOH . F 3 HOH A 224 824 207 HOH HOH . F 3 HOH A 225 825 90 HOH HOH . F 3 HOH A 226 826 145 HOH HOH . F 3 HOH A 227 827 244 HOH HOH . F 3 HOH A 228 828 194 HOH HOH . F 3 HOH A 229 829 153 HOH HOH . F 3 HOH A 230 830 150 HOH HOH . F 3 HOH A 231 831 119 HOH HOH . F 3 HOH A 232 832 157 HOH HOH . F 3 HOH A 233 833 206 HOH HOH . F 3 HOH A 234 834 234 HOH HOH . F 3 HOH A 235 835 161 HOH HOH . F 3 HOH A 236 836 189 HOH HOH . F 3 HOH A 237 837 107 HOH HOH . F 3 HOH A 238 838 143 HOH HOH . F 3 HOH A 239 839 135 HOH HOH . F 3 HOH A 240 840 182 HOH HOH . F 3 HOH A 241 841 222 HOH HOH . F 3 HOH A 242 842 148 HOH HOH . F 3 HOH A 243 843 76 HOH HOH . F 3 HOH A 244 844 227 HOH HOH . F 3 HOH A 245 845 224 HOH HOH . F 3 HOH A 246 846 216 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 I I3 I3C . . . D 2 28.99 -0.162 13.009 0.58 21.08 ? I3 I3C 503 A 1 HETATM 2 I I2 I3C . . . D 2 33.738 3.01 11.145 0.58 22.29 ? I2 I3C 503 A 1 HETATM 3 I I1 I3C . . . D 2 28.177 4.221 8.95 0.58 25.86 ? I1 I3C 503 A 1 HETATM 4 O O8 I3C . . . D 2 27.074 0.603 10.782 0.58 24.96 ? O8 I3C 503 A 1 HETATM 5 O O9 I3C . . . D 2 26.604 2.702 11.105 0.58 27.11 ? O9 I3C 503 A 1 HETATM 6 C C10 I3C . . . D 2 31.385 4.51 9.369 0.58 11.36 ? C10 I3C 503 A 1 HETATM 7 N N13 I3C . . . D 2 32.015 0.862 12.711 0.58 23.43 ? N13 I3C 503 A 1 HETATM 8 C C1 I3C . . . D 2 28.952 2.1 10.992 0.58 11 ? C1 I3C 503 A 1 HETATM 9 C C6 I3C . . . D 2 29.787 1.368 11.811 0.58 10.48 ? C6 I3C 503 A 1 HETATM 10 C C5 I3C . . . D 2 31.145 1.637 11.846 0.58 15.63 ? C5 I3C 503 A 1 HETATM 11 C C4 I3C . . . D 2 31.665 2.648 11.053 0.58 12.66 ? C4 I3C 503 A 1 HETATM 12 C C3 I3C . . . D 2 30.827 3.378 10.222 0.58 14.32 ? C3 I3C 503 A 1 HETATM 13 C C2 I3C . . . D 2 29.465 3.107 10.201 0.58 18.97 ? C2 I3C 503 A 1 HETATM 14 C C7 I3C . . . D 2 27.456 1.789 10.956 0.58 18.94 ? C7 I3C 503 A 1 HETATM 15 O O11 I3C . . . D 2 31.533 5.624 9.929 0.58 14.2 ? O11 I3C 503 A 1 HETATM 16 O O12 I3C . . . D 2 31.688 4.358 8.154 0.58 14.58 ? O12 I3C 503 A 1 HETATM 17 H HN13 I3C . . . D 2 32.111 0.018 12.578 0.58 28.11 ? HN13 I3C 503 A 1 HETATM 18 H HN1A I3C . . . D 2 32.429 1.243 13.362 0.58 28.11 ? HN1A I3C 503 A 1 # _model_server_stats.io_time_ms 12 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 227 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 18 #