data_7JTC # _model_server_result.job_id RLKxp3ULkBGc05yDI1sQUg _model_server_result.datetime_utc '2024-10-25 20:28:50' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7jtc # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":1701}' # _entry.id 7JTC # _exptl.entry_id 7JTC _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 343.468 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 1-{6-[(3R)-3-methylmorpholin-4-yl]-2-(methylsulfanyl)pyrimidin-4-yl}cyclopropane-1-sulfonimidoamide _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 7JTC _cell.length_a 46.6 _cell.length_b 56.89 _cell.length_c 59.28 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7JTC _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C13 H21 N5 O2 S2' _chem_comp.formula_weight 343.468 _chem_comp.id VK1 _chem_comp.mon_nstd_flag . _chem_comp.name 1-{6-[(3R)-3-methylmorpholin-4-yl]-2-(methylsulfanyl)pyrimidin-4-yl}cyclopropane-1-sulfonimidoamide _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag O22 S02 VK1 doub 385 n n N21 S02 VK1 doub 386 n n N01 S02 VK1 sing 387 n n S02 C03 VK1 sing 388 n n C11 C10 VK1 sing 389 n n S18 C17 VK1 sing 390 n n S18 C19 VK1 sing 391 n n N20 C17 VK1 doub 392 n y N20 C06 VK1 sing 393 n y C03 C05 VK1 sing 394 n n C03 C06 VK1 sing 395 n n C03 C04 VK1 sing 396 n n C05 C04 VK1 sing 397 n n C17 N16 VK1 sing 398 n y C06 C07 VK1 doub 399 n y N16 C08 VK1 doub 400 n y C07 C08 VK1 sing 401 n y C08 N09 VK1 sing 402 n n C10 N09 VK1 sing 403 n n C10 C12 VK1 sing 404 n n C15 N09 VK1 sing 405 n n C15 C14 VK1 sing 406 n n C12 O13 VK1 sing 407 n n O13 C14 VK1 sing 408 n n C10 H1 VK1 sing 409 n n C15 H2 VK1 sing 410 n n C15 H3 VK1 sing 411 n n C04 H4 VK1 sing 412 n n C04 H5 VK1 sing 413 n n C05 H6 VK1 sing 414 n n C05 H7 VK1 sing 415 n n C07 H8 VK1 sing 416 n n C11 H9 VK1 sing 417 n n C11 H10 VK1 sing 418 n n C11 H11 VK1 sing 419 n n C12 H12 VK1 sing 420 n n C12 H13 VK1 sing 421 n n C14 H14 VK1 sing 422 n n C14 H15 VK1 sing 423 n n C19 H16 VK1 sing 424 n n C19 H17 VK1 sing 425 n n C19 H18 VK1 sing 426 n n N01 H19 VK1 sing 427 n n N01 H20 VK1 sing 428 n n N21 H21 VK1 sing 429 n n # _atom_sites.entry_id 7JTC _atom_sites.fract_transf_matrix[1][1] 0.021459 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.017578 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.016869 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 VK1 A 1 1701 1701 VK1 LIG . C 3 EDO A 1 1702 1801 EDO EDO . D 3 EDO A 1 1703 1901 EDO EDO . E 4 HOH A 1 1801 1 HOH HOH . E 4 HOH A 2 1802 8 HOH HOH . E 4 HOH A 3 1803 3 HOH HOH . E 4 HOH A 4 1804 17 HOH HOH . E 4 HOH A 5 1805 14 HOH HOH . E 4 HOH A 6 1806 13 HOH HOH . E 4 HOH A 7 1807 11 HOH HOH . E 4 HOH A 8 1808 18 HOH HOH . E 4 HOH A 9 1809 5 HOH HOH . E 4 HOH A 10 1810 6 HOH HOH . E 4 HOH A 11 1811 10 HOH HOH . E 4 HOH A 12 1812 12 HOH HOH . E 4 HOH A 13 1813 15 HOH HOH . E 4 HOH A 14 1814 16 HOH HOH . E 4 HOH A 15 1815 19 HOH HOH . E 4 HOH A 16 1816 4 HOH HOH . E 4 HOH A 17 1817 9 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C10 VK1 . . . B 2 -16.815 20.305 -6.076 1 38.37 ? C10 VK1 1701 A 1 HETATM 2 C C15 VK1 . . . B 2 -15.915 18.071 -5.812 1 35.28 ? C15 VK1 1701 A 1 HETATM 3 C C17 VK1 . . . B 2 -20.58 18.955 -6.634 1 41.8 ? C17 VK1 1701 A 1 HETATM 4 C C03 VK1 . . . B 2 -20.512 15.281 -6.783 1 46.45 ? C03 VK1 1701 A 1 HETATM 5 C C04 VK1 . . . B 2 -20.783 14.099 -5.847 1 50.41 ? C04 VK1 1701 A 1 HETATM 6 C C05 VK1 . . . B 2 -19.499 14.134 -6.671 1 50 ? C05 VK1 1701 A 1 HETATM 7 C C06 VK1 . . . B 2 -20.057 16.737 -6.619 1 39.34 ? C06 VK1 1701 A 1 HETATM 8 C C07 VK1 . . . B 2 -18.737 17.047 -6.267 1 35.53 ? C07 VK1 1701 A 1 HETATM 9 C C08 VK1 . . . B 2 -18.441 18.404 -6.131 1 37.06 ? C08 VK1 1701 A 1 HETATM 10 C C11 VK1 . . . B 2 -16.37 20.397 -7.554 1 37.82 ? C11 VK1 1701 A 1 HETATM 11 C C12 VK1 . . . B 2 -15.718 20.826 -5.141 1 41.63 ? C12 VK1 1701 A 1 HETATM 12 C C14 VK1 . . . B 2 -14.951 18.631 -4.765 1 34.28 ? C14 VK1 1701 A 1 HETATM 13 C C19 VK1 . . . B 2 -21.021 21.827 -6.238 1 43.91 ? C19 VK1 1701 A 1 HETATM 14 N N01 VK1 . . . B 2 -22.66 16.366 -8.459 1 51.15 ? N01 VK1 1701 A 1 HETATM 15 N N09 VK1 . . . B 2 -17.125 18.902 -5.783 1 35.09 ? N09 VK1 1701 A 1 HETATM 16 N N16 VK1 . . . B 2 -19.357 19.327 -6.324 1 37.71 ? N16 VK1 1701 A 1 HETATM 17 N N20 VK1 . . . B 2 -20.952 17.703 -6.788 1 36.52 ? N20 VK1 1701 A 1 HETATM 18 N N21 VK1 . . . B 2 -21.163 13.83 -9.091 1 51.12 ? N21 VK1 1701 A 1 HETATM 19 O O13 VK1 . . . B 2 -14.629 19.952 -5.071 1 37.71 ? O13 VK1 1701 A 1 HETATM 20 O O22 VK1 . . . B 2 -21.149 15.701 -9.744 1 49.1 ? O22 VK1 1701 A 1 HETATM 21 S S02 VK1 . . . B 2 -21.414 15.175 -8.394 1 51.61 ? S02 VK1 1701 A 1 HETATM 22 S S18 VK1 . . . B 2 -21.777 20.276 -6.856 1 44.03 ? S18 VK1 1701 A 1 # _model_server_stats.io_time_ms 9 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 294 _model_server_stats.encode_time_ms 7 _model_server_stats.element_count 22 #