data_7JTG # _model_server_result.job_id YZybGRrhLegnd0GWCpAWwg _model_server_result.datetime_utc '2024-12-11 22:44:35' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7jtg # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":700}' # _entry.id 7JTG # _exptl.entry_id 7JTG _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 221.208 _entity.id 5 _entity.src_method man _entity.type non-polymer _entity.pdbx_description 2-acetamido-2-deoxy-beta-D-glucopyranose _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 7JTG _cell.length_a 59.956 _cell.length_b 65.343 _cell.length_c 215.871 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7JTG _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall 'P 2ac 2ab' _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details trimeric _pdbx_struct_assembly.oligomeric_count 3 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 5 _struct_asym.id E _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _pdbx_entity_branch.entity_id 4 _pdbx_entity_branch.type oligosaccharide # _pdbx_entity_branch_link.link_id 1 _pdbx_entity_branch_link.details ? _pdbx_entity_branch_link.entity_id 4 _pdbx_entity_branch_link.entity_branch_list_num_1 2 _pdbx_entity_branch_link.entity_branch_list_num_2 1 _pdbx_entity_branch_link.comp_id_1 NAG _pdbx_entity_branch_link.comp_id_2 NAG _pdbx_entity_branch_link.atom_id_1 C1 _pdbx_entity_branch_link.leaving_atom_id_1 O1 _pdbx_entity_branch_link.atom_stereo_config_1 . _pdbx_entity_branch_link.atom_id_2 O4 _pdbx_entity_branch_link.leaving_atom_id_2 HO4 _pdbx_entity_branch_link.atom_stereo_config_2 . _pdbx_entity_branch_link.value_order sing # loop_ _pdbx_branch_scheme.entity_id _pdbx_branch_scheme.hetero _pdbx_branch_scheme.asym_id _pdbx_branch_scheme.mon_id _pdbx_branch_scheme.num _pdbx_branch_scheme.pdb_asym_id _pdbx_branch_scheme.pdb_seq_num _pdbx_branch_scheme.pdb_mon_id _pdbx_branch_scheme.auth_asym_id _pdbx_branch_scheme.auth_seq_num _pdbx_branch_scheme.auth_mon_id 4 n D NAG 1 G 1 NAG G 709 NAG 4 n D NAG 2 G 2 NAG G 710 NAG # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 22 A CYS 22 1_555 A SG CYS 96 A CYS 92 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.024 ? disulf ? disulf2 A SG CYS 155 A CYS 140 1_555 A SG CYS 211 A CYS 196 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.028 ? disulf ? disulf3 B SG CYS 23 B CYS 23 1_555 B SG CYS 88 B CYS 88 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.037 ? disulf ? disulf4 B SG CYS 134 B CYS 134 1_555 B SG CYS 194 B CYS 194 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.016 ? disulf ? disulf5 C SG CYS 18 E CYS 429 1_555 C SG CYS 70 E CYS 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.028 ? disulf ? disulf6 C SG CYS 41 E CYS 452 1_555 C SG CYS 164 E CYS 620 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? disulf ? disulf7 C SG CYS 61 E CYS 494 1_555 C SG CYS 131 E CYS 564 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.041 ? disulf ? disulf8 C SG CYS 75 E CYS 508 1_555 C SG CYS 119 E CYS 552 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.027 ? disulf ? disulf9 C SG CYS 151 E CYS 607 1_555 C SG CYS 188 E CYS 644 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.021 ? covale ? covale1 C ND2 ASN 12 E ASN 423 1_555 E C1 NAG . E NAG 700 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.451 ? covale ? covale2 C ND2 ASN 123 E ASN 556 1_555 D C1 NAG . G NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.454 ? covale ? covale3 D O4 NAG . G NAG 1 1_555 D C1 NAG . G NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.427 ? # _chem_comp.formula 'C8 H15 N O6' _chem_comp.formula_weight 221.208 _chem_comp.id NAG _chem_comp.mon_nstd_flag . _chem_comp.name 2-acetamido-2-deoxy-beta-D-glucopyranose _chem_comp.type 'd-saccharide, beta linking' _chem_comp.pdbx_synonyms N-acetyl-beta-D-glucosamine;2-acetamido-2-deoxy-beta-D-glucose;2-acetamido-2-deoxy-D-glucose;2-acetamido-2-deoxy-glucose;N-ACETYL-D-GLUCOSAMINE # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 NAG sing 237 n n C1 O1 NAG sing 238 n n C1 O5 NAG sing 239 n n C1 H1 NAG sing 240 n n C2 C3 NAG sing 241 n n C2 N2 NAG sing 242 n n C2 H2 NAG sing 243 n n C3 C4 NAG sing 244 n n C3 O3 NAG sing 245 n n C3 H3 NAG sing 246 n n C4 C5 NAG sing 247 n n C4 O4 NAG sing 248 n n C4 H4 NAG sing 249 n n C5 C6 NAG sing 250 n n C5 O5 NAG sing 251 n n C5 H5 NAG sing 252 n n C6 O6 NAG sing 253 n n C6 H61 NAG sing 254 n n C6 H62 NAG sing 255 n n C7 C8 NAG sing 256 n n C7 N2 NAG sing 257 n n C7 O7 NAG doub 258 n n C8 H81 NAG sing 259 n n C8 H82 NAG sing 260 n n C8 H83 NAG sing 261 n n N2 HN2 NAG sing 262 n n O1 HO1 NAG sing 263 n n O3 HO3 NAG sing 264 n n O4 HO4 NAG sing 265 n n O6 HO6 NAG sing 266 n n # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.identifier _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version NAG DGlcpNAcb 'CONDENSED IUPAC CARBOHYDRATE SYMBOL' GMML 1 NAG N-acetyl-b-D-glucopyranosamine 'COMMON NAME' GMML 1 NAG b-D-GlcpNAc 'IUPAC CARBOHYDRATE SYMBOL' PDB-CARE 1 NAG GlcNAc 'SNFG CARBOHYDRATE SYMBOL' GMML 1 # _atom_sites.entry_id 7JTG _atom_sites.fract_transf_matrix[1][1] 0.016679 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.015304 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.004632 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 5 NAG E 1 700 700 NAG NAG . F 6 HOH A 1 301 48 HOH HOH . F 6 HOH A 2 302 11 HOH HOH . F 6 HOH A 3 303 26 HOH HOH . F 6 HOH A 4 304 18 HOH HOH . F 6 HOH A 5 305 22 HOH HOH . F 6 HOH A 6 306 17 HOH HOH . F 6 HOH A 7 307 16 HOH HOH . F 6 HOH A 8 308 33 HOH HOH . F 6 HOH A 9 309 35 HOH HOH . F 6 HOH A 10 310 39 HOH HOH . F 6 HOH A 11 311 7 HOH HOH . F 6 HOH A 12 312 42 HOH HOH . F 6 HOH A 13 313 55 HOH HOH . F 6 HOH A 14 314 10 HOH HOH . F 6 HOH A 15 315 46 HOH HOH . F 6 HOH A 16 316 14 HOH HOH . F 6 HOH A 17 317 9 HOH HOH . F 6 HOH A 18 318 23 HOH HOH . F 6 HOH A 19 319 41 HOH HOH . G 6 HOH B 1 301 34 HOH HOH . G 6 HOH B 2 302 43 HOH HOH . G 6 HOH B 3 303 53 HOH HOH . G 6 HOH B 4 304 50 HOH HOH . G 6 HOH B 5 305 13 HOH HOH . G 6 HOH B 6 306 49 HOH HOH . G 6 HOH B 7 307 37 HOH HOH . G 6 HOH B 8 308 27 HOH HOH . G 6 HOH B 9 309 3 HOH HOH . G 6 HOH B 10 310 52 HOH HOH . G 6 HOH B 11 311 15 HOH HOH . G 6 HOH B 12 312 25 HOH HOH . G 6 HOH B 13 313 6 HOH HOH . G 6 HOH B 14 314 28 HOH HOH . G 6 HOH B 15 315 1 HOH HOH . G 6 HOH B 16 316 54 HOH HOH . G 6 HOH B 17 317 20 HOH HOH . G 6 HOH B 18 318 31 HOH HOH . G 6 HOH B 19 319 36 HOH HOH . G 6 HOH B 20 320 30 HOH HOH . G 6 HOH B 21 321 56 HOH HOH . G 6 HOH B 22 322 24 HOH HOH . H 6 HOH E 1 801 32 HOH HOH . H 6 HOH E 2 802 8 HOH HOH . H 6 HOH E 3 803 12 HOH HOH . H 6 HOH E 4 804 4 HOH HOH . H 6 HOH E 5 805 29 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 NAG . . . E 5 -9.786 -4.41 96.414 1 88.28 ? C1 NAG 700 E 1 HETATM 2 C C2 NAG . . . E 5 -11.008 -3.874 97.169 1 102.66 ? C2 NAG 700 E 1 HETATM 3 C C3 NAG . . . E 5 -12.124 -3.529 96.189 1 106.34 ? C3 NAG 700 E 1 HETATM 4 C C4 NAG . . . E 5 -11.616 -2.527 95.161 1 98.21 ? C4 NAG 700 E 1 HETATM 5 C C5 NAG . . . E 5 -10.367 -3.062 94.462 1 92.88 ? C5 NAG 700 E 1 HETATM 6 C C6 NAG . . . E 5 -9.734 -2.035 93.553 1 92.06 ? C6 NAG 700 E 1 HETATM 7 C C7 NAG . . . E 5 -11.907 -6.042 97.966 1 112.2 ? C7 NAG 700 E 1 HETATM 8 C C8 NAG . . . E 5 -12.353 -6.81 99.174 1 113.44 ? C8 NAG 700 E 1 HETATM 9 N N2 NAG . . . E 5 -11.478 -4.794 98.196 1 107.82 ? N2 NAG 700 E 1 HETATM 10 O O3 NAG . . . E 5 -13.235 -2.985 96.892 1 113.91 ? O3 NAG 700 E 1 HETATM 11 O O4 NAG . . . E 5 -12.624 -2.255 94.194 1 96.81 ? O4 NAG 700 E 1 HETATM 12 O O5 NAG . . . E 5 -9.362 -3.435 95.423 1 91.95 ? O5 NAG 700 E 1 HETATM 13 O O6 NAG . . . E 5 -10.215 -0.727 93.828 1 92.68 ? O6 NAG 700 E 1 HETATM 14 O O7 NAG . . . E 5 -11.931 -6.532 96.839 1 112.88 ? O7 NAG 700 E 1 # _model_server_stats.io_time_ms 21 _model_server_stats.parse_time_ms 20 _model_server_stats.create_model_time_ms 10 _model_server_stats.query_time_ms 304 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 14 #