data_7JTM # _model_server_result.job_id zrcF1nhwxchnArhshoBxFQ _model_server_result.datetime_utc '2024-11-14 13:46:08' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7jtm # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":4000}' # _entry.id 7JTM # _exptl.entry_id 7JTM _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 678.59 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'trans-4-[(3aR,9bR)-8-cyano-9b-[(4-fluorophenyl)sulfonyl]-7-(1,1,1,2,3,3,3-heptafluoropropan-2-yl)-1,2,3a,4,5,9b-hexahydro-3H-benzo[e]indole-3-carbonyl]cyclohexane-1-carboxylic acid' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 7JTM _cell.length_a 61.849 _cell.length_b 61.849 _cell.length_c 157.72 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7JTM _symmetry.cell_setting ? _symmetry.Int_Tables_number 92 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 41 21 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C30 H26 F8 N2 O5 S' _chem_comp.formula_weight 678.59 _chem_comp.id VK7 _chem_comp.mon_nstd_flag . _chem_comp.name 'trans-4-[(3aR,9bR)-8-cyano-9b-[(4-fluorophenyl)sulfonyl]-7-(1,1,1,2,3,3,3-heptafluoropropan-2-yl)-1,2,3a,4,5,9b-hexahydro-3H-benzo[e]indole-3-carbonyl]cyclohexane-1-carboxylic acid' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag O19 S11 VK7 doub 376 n n N44 C43 VK7 trip 377 n n O20 S11 VK7 doub 378 n n S11 C12 VK7 sing 379 n n S11 C10 VK7 sing 380 n n C23 C24 VK7 sing 381 n n C23 C10 VK7 sing 382 n n C43 C1 VK7 sing 383 n n C6 C1 VK7 doub 384 n y C6 C5 VK7 sing 385 n y C12 C17 VK7 doub 386 n y C12 C13 VK7 sing 387 n y C17 C16 VK7 sing 388 n y F38 C36 VK7 sing 389 n n C24 N22 VK7 sing 390 n n C10 C5 VK7 sing 391 n n C10 C9 VK7 sing 392 n n C1 C2 VK7 sing 393 n y C5 C4 VK7 doub 394 n y C31 C32 VK7 sing 395 n n C31 C30 VK7 sing 396 n n N22 C25 VK7 sing 397 n n N22 C9 VK7 sing 398 n n C13 C14 VK7 doub 399 n y C27 C32 VK7 sing 400 n n C27 C25 VK7 sing 401 n n C27 C28 VK7 sing 402 n n C16 C15 VK7 doub 403 n y C25 O26 VK7 doub 404 n n F46 C21 VK7 sing 405 n n O34 C33 VK7 doub 406 n n C9 C8 VK7 sing 407 n n C36 F37 VK7 sing 408 n n C36 C21 VK7 sing 409 n n C36 F39 VK7 sing 410 n n O35 C33 VK7 sing 411 n n C33 C30 VK7 sing 412 n n C2 C21 VK7 sing 413 n n C2 C3 VK7 doub 414 n y C29 C30 VK7 sing 415 n n C29 C28 VK7 sing 416 n n C21 C45 VK7 sing 417 n n C14 C15 VK7 sing 418 n y C15 F18 VK7 sing 419 n n C4 C3 VK7 sing 420 n y C4 C7 VK7 sing 421 n n C8 C7 VK7 sing 422 n n C45 F41 VK7 sing 423 n n C45 F40 VK7 sing 424 n n C45 F42 VK7 sing 425 n n C3 H47 VK7 sing 426 n n C6 H48 VK7 sing 427 n n C7 H50 VK7 sing 428 n n C7 H49 VK7 sing 429 n n C8 H51 VK7 sing 430 n n C8 H52 VK7 sing 431 n n C9 H53 VK7 sing 432 n n C13 H54 VK7 sing 433 n n C14 H55 VK7 sing 434 n n C16 H56 VK7 sing 435 n n C17 H57 VK7 sing 436 n n C23 H58 VK7 sing 437 n n C23 H59 VK7 sing 438 n n C24 H61 VK7 sing 439 n n C24 H60 VK7 sing 440 n n C27 H62 VK7 sing 441 n n C28 H64 VK7 sing 442 n n C28 H63 VK7 sing 443 n n C29 H1 VK7 sing 444 n n C29 H2 VK7 sing 445 n n C30 H3 VK7 sing 446 n n C31 H4 VK7 sing 447 n n C31 H5 VK7 sing 448 n n C32 H71 VK7 sing 449 n n C32 H70 VK7 sing 450 n n O35 H6 VK7 sing 451 n n # _atom_sites.entry_id 7JTM _atom_sites.fract_transf_matrix[1][1] 0.016168 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.016168 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.00634 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 VK7 A 1 4000 4000 VK7 Z7Z . C 3 HOH A 1 4101 2 HOH HOH . C 3 HOH A 2 4102 40 HOH HOH . C 3 HOH A 3 4103 33 HOH HOH . C 3 HOH A 4 4104 1 HOH HOH . C 3 HOH A 5 4105 19 HOH HOH . C 3 HOH A 6 4106 27 HOH HOH . C 3 HOH A 7 4107 43 HOH HOH . C 3 HOH A 8 4108 21 HOH HOH . C 3 HOH A 9 4109 18 HOH HOH . C 3 HOH A 10 4110 22 HOH HOH . C 3 HOH A 11 4111 3 HOH HOH . C 3 HOH A 12 4112 38 HOH HOH . C 3 HOH A 13 4113 7 HOH HOH . C 3 HOH A 14 4114 17 HOH HOH . C 3 HOH A 15 4115 37 HOH HOH . C 3 HOH A 16 4116 4 HOH HOH . C 3 HOH A 17 4117 29 HOH HOH . C 3 HOH A 18 4118 10 HOH HOH . C 3 HOH A 19 4119 15 HOH HOH . C 3 HOH A 20 4120 39 HOH HOH . C 3 HOH A 21 4121 35 HOH HOH . C 3 HOH A 22 4122 28 HOH HOH . C 3 HOH A 23 4123 30 HOH HOH . C 3 HOH A 24 4124 24 HOH HOH . C 3 HOH A 25 4125 34 HOH HOH . C 3 HOH A 26 4126 23 HOH HOH . C 3 HOH A 27 4127 13 HOH HOH . C 3 HOH A 28 4128 26 HOH HOH . C 3 HOH A 29 4129 9 HOH HOH . C 3 HOH A 30 4130 6 HOH HOH . C 3 HOH A 31 4131 5 HOH HOH . C 3 HOH A 32 4132 32 HOH HOH . C 3 HOH A 33 4133 31 HOH HOH . C 3 HOH A 34 4134 12 HOH HOH . C 3 HOH A 35 4135 8 HOH HOH . C 3 HOH A 36 4136 16 HOH HOH . C 3 HOH A 37 4137 11 HOH HOH . C 3 HOH A 38 4138 14 HOH HOH . C 3 HOH A 39 4139 42 HOH HOH . C 3 HOH A 40 4140 25 HOH HOH . C 3 HOH A 41 4141 20 HOH HOH . C 3 HOH A 42 4142 36 HOH HOH . C 3 HOH A 43 4143 41 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 VK7 . . . B 2 -23.307 -9.093 -25.308 1 89.14 ? C1 VK7 4000 A 1 HETATM 2 C C2 VK7 . . . B 2 -23.79 -9.575 -24.083 1 89.37 ? C2 VK7 4000 A 1 HETATM 3 C C3 VK7 . . . B 2 -24.452 -8.688 -23.232 1 89.41 ? C3 VK7 4000 A 1 HETATM 4 C C4 VK7 . . . B 2 -24.656 -7.353 -23.588 1 89.34 ? C4 VK7 4000 A 1 HETATM 5 C C5 VK7 . . . B 2 -24.281 -6.912 -24.862 1 89.45 ? C5 VK7 4000 A 1 HETATM 6 C C6 VK7 . . . B 2 -23.581 -7.783 -25.687 1 89.35 ? C6 VK7 4000 A 1 HETATM 7 C C7 VK7 . . . B 2 -25.189 -6.383 -22.565 1 89.2 ? C7 VK7 4000 A 1 HETATM 8 C C8 VK7 . . . B 2 -24.747 -4.957 -22.849 1 89.16 ? C8 VK7 4000 A 1 HETATM 9 C C9 VK7 . . . B 2 -25.284 -4.57 -24.225 1 89.26 ? C9 VK7 4000 A 1 HETATM 10 C C10 VK7 . . . B 2 -24.842 -5.559 -25.386 1 89.71 ? C10 VK7 4000 A 1 HETATM 11 C C12 VK7 . . . B 2 -27.465 -6.916 -25.539 1 90.11 ? C12 VK7 4000 A 1 HETATM 12 C C13 VK7 . . . B 2 -28.33 -6.298 -24.651 1 89.87 ? C13 VK7 4000 A 1 HETATM 13 S S11 VK7 . . . B 2 -26.386 -5.925 -26.52 1 90.55 ? S11 VK7 4000 A 1 HETATM 14 C C14 VK7 . . . B 2 -28.931 -7.044 -23.655 1 89.83 ? C14 VK7 4000 A 1 HETATM 15 C C15 VK7 . . . B 2 -28.663 -8.383 -23.594 1 89.83 ? C15 VK7 4000 A 1 HETATM 16 C C16 VK7 . . . B 2 -27.876 -9.031 -24.505 1 89.76 ? C16 VK7 4000 A 1 HETATM 17 C C17 VK7 . . . B 2 -27.278 -8.288 -25.504 1 89.82 ? C17 VK7 4000 A 1 HETATM 18 F F18 VK7 . . . B 2 -29.155 -9.091 -22.547 1 89.99 ? F18 VK7 4000 A 1 HETATM 19 O O19 VK7 . . . B 2 -25.932 -6.713 -27.633 1 90.4 ? O19 VK7 4000 A 1 HETATM 20 O O20 VK7 . . . B 2 -27.04 -4.671 -26.779 1 90.79 ? O20 VK7 4000 A 1 HETATM 21 C C21 VK7 . . . B 2 -23.655 -11.094 -23.672 1 89.79 ? C21 VK7 4000 A 1 HETATM 22 N N22 VK7 . . . B 2 -24.756 -3.275 -24.684 1 88.96 ? N22 VK7 4000 A 1 HETATM 23 C C23 VK7 . . . B 2 -23.785 -4.773 -26.206 1 89.39 ? C23 VK7 4000 A 1 HETATM 24 C C24 VK7 . . . B 2 -23.506 -3.491 -25.426 1 89.16 ? C24 VK7 4000 A 1 HETATM 25 C C25 VK7 . . . B 2 -25.352 -2.115 -24.339 1 88.63 ? C25 VK7 4000 A 1 HETATM 26 O O26 VK7 . . . B 2 -26.483 -2.109 -23.887 1 88.5 ? O26 VK7 4000 A 1 HETATM 27 C C27 VK7 . . . B 2 -24.613 -0.801 -24.6 1 88.26 ? C27 VK7 4000 A 1 HETATM 28 C C28 VK7 . . . B 2 -23.472 -0.608 -23.596 1 88.06 ? C28 VK7 4000 A 1 HETATM 29 C C29 VK7 . . . B 2 -22.714 0.682 -23.887 1 87.97 ? C29 VK7 4000 A 1 HETATM 30 C C30 VK7 . . . B 2 -23.642 1.907 -23.822 1 88.05 ? C30 VK7 4000 A 1 HETATM 31 C C31 VK7 . . . B 2 -24.83 1.71 -24.774 1 88.1 ? C31 VK7 4000 A 1 HETATM 32 C C32 VK7 . . . B 2 -25.564 0.398 -24.49 1 88.16 ? C32 VK7 4000 A 1 HETATM 33 C C33 VK7 . . . B 2 -22.946 3.232 -24.092 1 87.89 ? C33 VK7 4000 A 1 HETATM 34 O O34 VK7 . . . B 2 -23.577 4.252 -24.251 1 87.8 ? O34 VK7 4000 A 1 HETATM 35 O O35 VK7 . . . B 2 -21.637 3.196 -24.148 1 87.94 ? O35 VK7 4000 A 1 HETATM 36 C C36 VK7 . . . B 2 -24.843 -11.988 -24.163 1 89.48 ? C36 VK7 4000 A 1 HETATM 37 F F37 VK7 . . . B 2 -24.6 -13.28 -23.946 1 88.97 ? F37 VK7 4000 A 1 HETATM 38 F F38 VK7 . . . B 2 -25.055 -11.839 -25.468 1 89.65 ? F38 VK7 4000 A 1 HETATM 39 F F39 VK7 . . . B 2 -25.978 -11.683 -23.537 1 89.34 ? F39 VK7 4000 A 1 HETATM 40 F F40 VK7 . . . B 2 -22.53 -10.469 -21.65 1 89.96 ? F40 VK7 4000 A 1 HETATM 41 F F41 VK7 . . . B 2 -22.948 -12.56 -21.908 1 90.05 ? F41 VK7 4000 A 1 HETATM 42 F F42 VK7 . . . B 2 -24.538 -11.199 -21.457 1 90.03 ? F42 VK7 4000 A 1 HETATM 43 C C43 VK7 . . . B 2 -22.476 -9.898 -26.167 1 88.7 ? C43 VK7 4000 A 1 HETATM 44 N N44 VK7 . . . B 2 -21.817 -10.564 -26.819 1 88.43 ? N44 VK7 4000 A 1 HETATM 45 C C45 VK7 . . . B 2 -23.411 -11.334 -22.147 1 89.97 ? C45 VK7 4000 A 1 HETATM 46 F F46 VK7 . . . B 2 -22.569 -11.69 -24.283 1 90.14 ? F46 VK7 4000 A 1 HETATM 47 H H47 VK7 . . . B 2 -24.875 -8.98 -22.272 0 107.29 ? H47 VK7 4000 A 1 HETATM 48 H H48 VK7 . . . B 2 -23.217 -7.471 -26.665 0 107.22 ? H48 VK7 4000 A 1 HETATM 49 H H50 VK7 . . . B 2 -24.878 -6.672 -21.562 0 107.04 ? H50 VK7 4000 A 1 HETATM 50 H H49 VK7 . . . B 2 -26.275 -6.457 -22.554 0 107.04 ? H49 VK7 4000 A 1 HETATM 51 H H51 VK7 . . . B 2 -25.102 -4.276 -22.076 0 106.99 ? H51 VK7 4000 A 1 HETATM 52 H H52 VK7 . . . B 2 -23.661 -4.879 -22.822 0 106.99 ? H52 VK7 4000 A 1 HETATM 53 H H53 VK7 . . . B 2 -26.371 -4.559 -24.16 0 107.12 ? H53 VK7 4000 A 1 HETATM 54 H H54 VK7 . . . B 2 -28.554 -5.235 -24.722 0 107.85 ? H54 VK7 4000 A 1 HETATM 55 H H55 VK7 . . . B 2 -29.606 -6.57 -22.944 0 107.8 ? H55 VK7 4000 A 1 HETATM 56 H H56 VK7 . . . B 2 -27.722 -10.108 -24.449 0 107.72 ? H56 VK7 4000 A 1 HETATM 57 H H57 VK7 . . . B 2 -26.665 -8.788 -26.253 0 107.79 ? H57 VK7 4000 A 1 HETATM 58 H H58 VK7 . . . B 2 -22.873 -5.351 -26.344 0 107.27 ? H58 VK7 4000 A 1 HETATM 59 H H59 VK7 . . . B 2 -24.115 -4.55 -27.22 0 107.27 ? H59 VK7 4000 A 1 HETATM 60 H H61 VK7 . . . B 2 -23.219 -2.68 -26.093 0 106.99 ? H61 VK7 4000 A 1 HETATM 61 H H60 VK7 . . . B 2 -22.654 -3.622 -24.762 0 106.99 ? H60 VK7 4000 A 1 HETATM 62 H H62 VK7 . . . B 2 -24.218 -0.744 -25.613 0 105.92 ? H62 VK7 4000 A 1 HETATM 63 H H64 VK7 . . . B 2 -22.798 -1.462 -23.628 0 105.67 ? H64 VK7 4000 A 1 HETATM 64 H H63 VK7 . . . B 2 -23.858 -0.59 -22.578 0 105.67 ? H63 VK7 4000 A 1 HETATM 65 H H71 VK7 . . . B 2 -26.408 0.263 -25.166 0 105.79 ? H71 VK7 4000 A 1 HETATM 66 H H70 VK7 . . . B 2 -26.007 0.44 -23.496 0 105.79 ? H70 VK7 4000 A 1 # _model_server_stats.io_time_ms 58 _model_server_stats.parse_time_ms 20 _model_server_stats.create_model_time_ms 17 _model_server_stats.query_time_ms 331 _model_server_stats.encode_time_ms 9 _model_server_stats.element_count 66 #