data_7JTW # _model_server_result.job_id ba_HS6vKB4dfI8hVdsv9gg _model_server_result.datetime_utc '2024-11-14 13:34:46' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7jtw # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":601}' # _entry.id 7JTW # _exptl.entry_id 7JTW _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 575.523 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '(4R)-6-[(2,5-dichloro-3-{[(2R,4R)-1-(cyclopentanecarbonyl)-2-methylpiperidin-4-yl]oxy}phenyl)amino]-6-oxo-4-phenylhexanoic acid' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 7JTW _cell.length_a 61.991 _cell.length_b 61.991 _cell.length_c 156.838 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7JTW _symmetry.cell_setting ? _symmetry.Int_Tables_number 92 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 41 21 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C30 H36 Cl2 N2 O5' _chem_comp.formula_weight 575.523 _chem_comp.id VK4 _chem_comp.mon_nstd_flag . _chem_comp.name '(4R)-6-[(2,5-dichloro-3-{[(2R,4R)-1-(cyclopentanecarbonyl)-2-methylpiperidin-4-yl]oxy}phenyl)amino]-6-oxo-4-phenylhexanoic acid' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag O33 C31 VK4 doub 393 n n O32 C31 VK4 sing 394 n n C31 C30 VK4 sing 395 n n C30 C29 VK4 sing 396 n n C29 C28 VK4 sing 397 n n C28 C34 VK4 sing 398 n n C28 C27 VK4 sing 399 n n C35 C34 VK4 doub 400 n y C35 C36 VK4 sing 401 n y C34 C39 VK4 sing 402 n y C36 C37 VK4 doub 403 n y C39 C38 VK4 doub 404 n y C37 C38 VK4 sing 405 n y C27 C25 VK4 sing 406 n n C22 C11 VK4 sing 407 n n CL7 C6 VK4 sing 408 n n C18 C19 VK4 sing 409 n n C18 C17 VK4 sing 410 n n C11 N12 VK4 sing 411 n n C11 C10 VK4 sing 412 n n C19 C20 VK4 sing 413 n n N12 C13 VK4 sing 414 n n N12 C15 VK4 sing 415 n n C13 C14 VK4 sing 416 n n C25 N24 VK4 sing 417 n n C25 O26 VK4 doub 418 n n N24 C1 VK4 sing 419 n n C9 C10 VK4 sing 420 n n C9 C14 VK4 sing 421 n n C9 O8 VK4 sing 422 n n C15 C17 VK4 sing 423 n n C15 O16 VK4 doub 424 n n C17 C21 VK4 sing 425 n n C6 C1 VK4 doub 426 n y C6 C5 VK4 sing 427 n y C1 C2 VK4 sing 428 n y C20 C21 VK4 sing 429 n n O8 C5 VK4 sing 430 n n C5 C4 VK4 doub 431 n y C2 C3 VK4 doub 432 n y C4 C3 VK4 sing 433 n y C3 CL2 VK4 sing 434 n n C10 H1 VK4 sing 435 n n C10 H2 VK4 sing 436 n n C11 H3 VK4 sing 437 n n C13 H4 VK4 sing 438 n n C13 H5 VK4 sing 439 n n C14 H6 VK4 sing 440 n n C14 H7 VK4 sing 441 n n C17 H8 VK4 sing 442 n n C18 H9 VK4 sing 443 n n C18 H10 VK4 sing 444 n n C19 H11 VK4 sing 445 n n C19 H12 VK4 sing 446 n n C2 H13 VK4 sing 447 n n C20 H14 VK4 sing 448 n n C20 H15 VK4 sing 449 n n C21 H16 VK4 sing 450 n n C21 H17 VK4 sing 451 n n C22 H18 VK4 sing 452 n n C22 H19 VK4 sing 453 n n C22 H20 VK4 sing 454 n n C27 H21 VK4 sing 455 n n C27 H22 VK4 sing 456 n n C28 H23 VK4 sing 457 n n C29 H24 VK4 sing 458 n n C29 H25 VK4 sing 459 n n C30 H26 VK4 sing 460 n n C30 H27 VK4 sing 461 n n C35 H28 VK4 sing 462 n n C36 H29 VK4 sing 463 n n C37 H30 VK4 sing 464 n n C38 H31 VK4 sing 465 n n C39 H32 VK4 sing 466 n n C4 H33 VK4 sing 467 n n C9 H34 VK4 sing 468 n n N24 H35 VK4 sing 469 n n O32 H36 VK4 sing 470 n n # _atom_sites.entry_id 7JTW _atom_sites.fract_transf_matrix[1][1] 0.016131 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.016131 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.006376 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 VK4 A 1 601 1 VK4 UNL . C 3 GOL A 1 602 1 GOL GOL . D 3 GOL A 1 603 2 GOL GOL . E 3 GOL A 1 604 3 GOL GOL . F 4 SO4 A 1 605 1 SO4 SO4 . G 5 HOH A 1 701 79 HOH HOH . G 5 HOH A 2 702 125 HOH HOH . G 5 HOH A 3 703 72 HOH HOH . G 5 HOH A 4 704 126 HOH HOH . G 5 HOH A 5 705 105 HOH HOH . G 5 HOH A 6 706 100 HOH HOH . G 5 HOH A 7 707 9 HOH HOH . G 5 HOH A 8 708 61 HOH HOH . G 5 HOH A 9 709 101 HOH HOH . G 5 HOH A 10 710 22 HOH HOH . G 5 HOH A 11 711 60 HOH HOH . G 5 HOH A 12 712 7 HOH HOH . G 5 HOH A 13 713 16 HOH HOH . G 5 HOH A 14 714 31 HOH HOH . G 5 HOH A 15 715 5 HOH HOH . G 5 HOH A 16 716 40 HOH HOH . G 5 HOH A 17 717 73 HOH HOH . G 5 HOH A 18 718 99 HOH HOH . G 5 HOH A 19 719 62 HOH HOH . G 5 HOH A 20 720 114 HOH HOH . G 5 HOH A 21 721 33 HOH HOH . G 5 HOH A 22 722 2 HOH HOH . G 5 HOH A 23 723 132 HOH HOH . G 5 HOH A 24 724 20 HOH HOH . G 5 HOH A 25 725 68 HOH HOH . G 5 HOH A 26 726 127 HOH HOH . G 5 HOH A 27 727 41 HOH HOH . G 5 HOH A 28 728 83 HOH HOH . G 5 HOH A 29 729 55 HOH HOH . G 5 HOH A 30 730 56 HOH HOH . G 5 HOH A 31 731 3 HOH HOH . G 5 HOH A 32 732 37 HOH HOH . G 5 HOH A 33 733 130 HOH HOH . G 5 HOH A 34 734 45 HOH HOH . G 5 HOH A 35 735 47 HOH HOH . G 5 HOH A 36 736 19 HOH HOH . G 5 HOH A 37 737 63 HOH HOH . G 5 HOH A 38 738 67 HOH HOH . G 5 HOH A 39 739 27 HOH HOH . G 5 HOH A 40 740 119 HOH HOH . G 5 HOH A 41 741 44 HOH HOH . G 5 HOH A 42 742 17 HOH HOH . G 5 HOH A 43 743 8 HOH HOH . G 5 HOH A 44 744 1 HOH HOH . G 5 HOH A 45 745 53 HOH HOH . G 5 HOH A 46 746 15 HOH HOH . G 5 HOH A 47 747 25 HOH HOH . G 5 HOH A 48 748 108 HOH HOH . G 5 HOH A 49 749 128 HOH HOH . G 5 HOH A 50 750 43 HOH HOH . G 5 HOH A 51 751 69 HOH HOH . G 5 HOH A 52 752 131 HOH HOH . G 5 HOH A 53 753 102 HOH HOH . G 5 HOH A 54 754 104 HOH HOH . G 5 HOH A 55 755 10 HOH HOH . G 5 HOH A 56 756 113 HOH HOH . G 5 HOH A 57 757 14 HOH HOH . G 5 HOH A 58 758 11 HOH HOH . G 5 HOH A 59 759 50 HOH HOH . G 5 HOH A 60 760 81 HOH HOH . G 5 HOH A 61 761 6 HOH HOH . G 5 HOH A 62 762 93 HOH HOH . G 5 HOH A 63 763 12 HOH HOH . G 5 HOH A 64 764 106 HOH HOH . G 5 HOH A 65 765 87 HOH HOH . G 5 HOH A 66 766 29 HOH HOH . G 5 HOH A 67 767 77 HOH HOH . G 5 HOH A 68 768 58 HOH HOH . G 5 HOH A 69 769 133 HOH HOH . G 5 HOH A 70 770 80 HOH HOH . G 5 HOH A 71 771 122 HOH HOH . G 5 HOH A 72 772 48 HOH HOH . G 5 HOH A 73 773 35 HOH HOH . G 5 HOH A 74 774 57 HOH HOH . G 5 HOH A 75 775 91 HOH HOH . G 5 HOH A 76 776 92 HOH HOH . G 5 HOH A 77 777 85 HOH HOH . G 5 HOH A 78 778 4 HOH HOH . G 5 HOH A 79 779 13 HOH HOH . G 5 HOH A 80 780 89 HOH HOH . G 5 HOH A 81 781 49 HOH HOH . G 5 HOH A 82 782 94 HOH HOH . G 5 HOH A 83 783 24 HOH HOH . G 5 HOH A 84 784 82 HOH HOH . G 5 HOH A 85 785 95 HOH HOH . G 5 HOH A 86 786 74 HOH HOH . G 5 HOH A 87 787 120 HOH HOH . G 5 HOH A 88 788 129 HOH HOH . G 5 HOH A 89 789 36 HOH HOH . G 5 HOH A 90 790 65 HOH HOH . G 5 HOH A 91 791 70 HOH HOH . G 5 HOH A 92 792 86 HOH HOH . G 5 HOH A 93 793 97 HOH HOH . G 5 HOH A 94 794 123 HOH HOH . G 5 HOH A 95 795 84 HOH HOH . G 5 HOH A 96 796 134 HOH HOH . G 5 HOH A 97 797 96 HOH HOH . G 5 HOH A 98 798 115 HOH HOH . G 5 HOH A 99 799 111 HOH HOH . G 5 HOH A 100 800 90 HOH HOH . G 5 HOH A 101 801 39 HOH HOH . G 5 HOH A 102 802 26 HOH HOH . G 5 HOH A 103 803 76 HOH HOH . G 5 HOH A 104 804 112 HOH HOH . G 5 HOH A 105 805 23 HOH HOH . G 5 HOH A 106 806 110 HOH HOH . G 5 HOH A 107 807 88 HOH HOH . G 5 HOH A 108 808 71 HOH HOH . G 5 HOH A 109 809 64 HOH HOH . G 5 HOH A 110 810 54 HOH HOH . G 5 HOH A 111 811 42 HOH HOH . G 5 HOH A 112 812 124 HOH HOH . G 5 HOH A 113 813 117 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 VK4 . . . B 2 -28.833 -3.604 -23.69 1 20.31 ? C1 VK4 601 A 1 HETATM 2 C C10 VK4 . . . B 2 -26.84 -7.457 -24.103 1 25.84 ? C10 VK4 601 A 1 HETATM 3 C C11 VK4 . . . B 2 -26.344 -8.252 -25.297 1 39.46 ? C11 VK4 601 A 1 HETATM 4 C C13 VK4 . . . B 2 -27.551 -10.206 -24.902 1 24.76 ? C13 VK4 601 A 1 HETATM 5 C C14 VK4 . . . B 2 -28.429 -9.34 -24.018 1 22.23 ? C14 VK4 601 A 1 HETATM 6 C C15 VK4 . . . B 2 -25.225 -10.262 -24.26 1 38.42 ? C15 VK4 601 A 1 HETATM 7 C C17 VK4 . . . B 2 -25.451 -11.742 -24.145 1 33.3 ? C17 VK4 601 A 1 HETATM 8 C C18 VK4 . . . B 2 -24.894 -12.349 -25.404 1 29.12 ? C18 VK4 601 A 1 HETATM 9 C C19 VK4 . . . B 2 -23.956 -13.453 -25.006 1 32.79 ? C19 VK4 601 A 1 HETATM 10 C C2 VK4 . . . B 2 -28.818 -3.274 -22.349 1 17.53 ? C2 VK4 601 A 1 HETATM 11 C C20 VK4 . . . B 2 -23.582 -13.211 -23.572 1 31.46 ? C20 VK4 601 A 1 HETATM 12 C C21 VK4 . . . B 2 -24.605 -12.256 -23.003 1 39.25 ? C21 VK4 601 A 1 HETATM 13 C C22 VK4 . . . B 2 -25.261 -7.622 -26.133 1 36.82 ? C22 VK4 601 A 1 HETATM 14 C C25 VK4 . . . B 2 -27.653 -1.769 -24.833 1 20.96 ? C25 VK4 601 A 1 HETATM 15 C C27 VK4 . . . B 2 -27.616 -1.11 -26.188 1 17.95 ? C27 VK4 601 A 1 HETATM 16 C C28 VK4 . . . B 2 -27.172 -2.07 -27.314 1 18.26 ? C28 VK4 601 A 1 HETATM 17 C C29 VK4 . . . B 2 -27.19 -1.311 -28.657 1 20.52 ? C29 VK4 601 A 1 HETATM 18 C C3 VK4 . . . B 2 -28.949 -4.274 -21.397 1 20.39 ? C3 VK4 601 A 1 HETATM 19 C C30 VK4 . . . B 2 -26.73 -2.233 -29.78 1 20.88 ? C30 VK4 601 A 1 HETATM 20 C C31 VK4 . . . B 2 -26.935 -1.437 -31.071 1 29.67 ? C31 VK4 601 A 1 HETATM 21 C C34 VK4 . . . B 2 -25.8 -2.544 -26.96 1 19.14 ? C34 VK4 601 A 1 HETATM 22 C C35 VK4 . . . B 2 -24.713 -1.718 -27.102 1 25.71 ? C35 VK4 601 A 1 HETATM 23 C C36 VK4 . . . B 2 -23.45 -2.141 -26.755 1 26.34 ? C36 VK4 601 A 1 HETATM 24 C C37 VK4 . . . B 2 -23.266 -3.415 -26.257 1 22.53 ? C37 VK4 601 A 1 HETATM 25 C C38 VK4 . . . B 2 -24.348 -4.245 -26.114 1 24.83 ? C38 VK4 601 A 1 HETATM 26 C C39 VK4 . . . B 2 -25.607 -3.815 -26.456 1 24.6 ? C39 VK4 601 A 1 HETATM 27 C C4 VK4 . . . B 2 -29.086 -5.595 -21.756 1 19.53 ? C4 VK4 601 A 1 HETATM 28 C C5 VK4 . . . B 2 -29.098 -5.908 -23.1 1 18.69 ? C5 VK4 601 A 1 HETATM 29 C C6 VK4 . . . B 2 -28.987 -4.92 -24.055 1 18.5 ? C6 VK4 601 A 1 HETATM 30 C C9 VK4 . . . B 2 -28.294 -7.839 -24.274 1 23.5 ? C9 VK4 601 A 1 HETATM 31 N N12 VK4 . . . B 2 -26.235 -9.662 -24.984 1 31.91 ? N12 VK4 601 A 1 HETATM 32 N N24 VK4 . . . B 2 -28.722 -2.635 -24.72 1 19.19 ? N24 VK4 601 A 1 HETATM 33 O O16 VK4 . . . B 2 -24.254 -9.717 -23.749 1 47.54 ? O16 VK4 601 A 1 HETATM 34 O O26 VK4 . . . B 2 -26.847 -1.503 -23.94 1 21.97 ? O26 VK4 601 A 1 HETATM 35 O O32 VK4 . . . B 2 -26.042 -0.595 -31.339 1 30.3 ? O32 VK4 601 A 1 HETATM 36 O O33 VK4 . . . B 2 -27.951 -1.736 -31.753 1 26.44 ? O33 VK4 601 A 1 HETATM 37 O O8 VK4 . . . B 2 -29.262 -7.242 -23.407 1 25.25 ? O8 VK4 601 A 1 HETATM 38 CL CL2 VK4 . . . B 2 -28.965 -3.852 -19.713 1 23.18 ? CL2 VK4 601 A 1 HETATM 39 CL CL7 VK4 . . . B 2 -29.025 -5.271 -25.751 1 32.24 ? CL7 VK4 601 A 1 # _model_server_stats.io_time_ms 9 _model_server_stats.parse_time_ms 14 _model_server_stats.create_model_time_ms 14 _model_server_stats.query_time_ms 292 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 39 #