data_7JUC # _model_server_result.job_id '_efFPW7hjLlS3RZ3TWl4Dg' _model_server_result.datetime_utc '2025-01-03 01:47:14' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7juc # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":802}' # _entry.id 7JUC # _exptl.entry_id 7JUC _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 194.182 _entity.id 3 _entity.src_method man _entity.type non-polymer _entity.pdbx_description 'methyl alpha-D-mannopyranoside' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 95.86 _cell.angle_gamma 90 _cell.entry_id 7JUC _cell.length_a 34.268 _cell.length_b 54.005 _cell.length_c 35.525 _cell.Z_PDB 2 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7JUC _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 2 A CYS 628 1_555 A SG CYS 15 A CYS 641 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.038 ? disulf ? disulf2 A SG CYS 36 A CYS 662 1_555 A SG CYS 133 A CYS 759 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.046 ? disulf ? disulf3 A SG CYS 109 A CYS 735 1_555 A SG CYS 125 A CYS 751 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.057 ? metalc ? metalc1 A OE1 GLU 99 A GLU 725 1_555 B CA CA . A CA 801 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.517 ? metalc ? metalc2 A OD1 ASN 101 A ASN 727 1_555 B CA CA . A CA 801 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.399 ? metalc ? metalc3 A OE1 GLU 107 A GLU 733 1_555 B CA CA . A CA 801 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.445 ? metalc ? metalc4 A OD1 ASN 121 A ASN 747 1_555 B CA CA . A CA 801 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.43 ? metalc ? metalc5 A O ASP 122 A ASP 748 1_555 B CA CA . A CA 801 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.483 ? metalc ? metalc6 A OD1 ASP 122 A ASP 748 1_555 B CA CA . A CA 801 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.34 ? metalc ? metalc7 B CA CA . A CA 801 1_555 C O3 MMA . A MMA 802 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.508 ? metalc ? metalc8 B CA CA . A CA 801 1_555 C O4 MMA . A MMA 802 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.554 ? # _chem_comp.formula 'C7 H14 O6' _chem_comp.formula_weight 194.182 _chem_comp.id MMA _chem_comp.mon_nstd_flag n _chem_comp.name 'methyl alpha-D-mannopyranoside' _chem_comp.type d-saccharide _chem_comp.pdbx_synonyms 'O1-METHYL-MANNOSE;methyl alpha-D-mannoside;methyl D-mannoside;methyl mannoside' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 MMA sing 237 n n C1 O1 MMA sing 238 n n C1 O5 MMA sing 239 n n C1 H1 MMA sing 240 n n C2 C3 MMA sing 241 n n C2 O2 MMA sing 242 n n C2 H2 MMA sing 243 n n C3 C4 MMA sing 244 n n C3 O3 MMA sing 245 n n C3 H3 MMA sing 246 n n C4 C5 MMA sing 247 n n C4 O4 MMA sing 248 n n C4 H4 MMA sing 249 n n C5 C6 MMA sing 250 n n C5 O5 MMA sing 251 n n C5 H5 MMA sing 252 n n C6 O6 MMA sing 253 n n C6 H61 MMA sing 254 n n C6 H62 MMA sing 255 n n C7 O1 MMA sing 256 n n C7 H71 MMA sing 257 n n C7 H72 MMA sing 258 n n C7 H73 MMA sing 259 n n O2 HO2 MMA sing 260 n n O3 HO3 MMA sing 261 n n O4 HO4 MMA sing 262 n n O6 HO6 MMA sing 263 n n # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.identifier _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version MMA DManp[1Me]a 'CONDENSED IUPAC CARBOHYDRATE SYMBOL' GMML 1 MMA 1-methyl-a-D-mannopyranose 'COMMON NAME' GMML 1 MMA o1-methyl-mannose 'IUPAC CARBOHYDRATE SYMBOL' PDB-CARE 1 # _atom_sites.entry_id 7JUC _atom_sites.fract_transf_matrix[1][1] 0.029182 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.002994 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.018517 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.028297 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 CA A 1 801 800 CA CA . C 3 MMA A 1 802 900 MMA MMA . D 4 HOH A 1 901 123 HOH HOH . D 4 HOH A 2 902 126 HOH HOH . D 4 HOH A 3 903 27 HOH HOH . D 4 HOH A 4 904 94 HOH HOH . D 4 HOH A 5 905 134 HOH HOH . D 4 HOH A 6 906 87 HOH HOH . D 4 HOH A 7 907 188 HOH HOH . D 4 HOH A 8 908 3 HOH HOH . D 4 HOH A 9 909 8 HOH HOH . D 4 HOH A 10 910 76 HOH HOH . D 4 HOH A 11 911 182 HOH HOH . D 4 HOH A 12 912 29 HOH HOH . D 4 HOH A 13 913 10 HOH HOH . D 4 HOH A 14 914 41 HOH HOH . D 4 HOH A 15 915 133 HOH HOH . D 4 HOH A 16 916 152 HOH HOH . D 4 HOH A 17 917 61 HOH HOH . D 4 HOH A 18 918 85 HOH HOH . D 4 HOH A 19 919 15 HOH HOH . D 4 HOH A 20 920 139 HOH HOH . D 4 HOH A 21 921 4 HOH HOH . D 4 HOH A 22 922 51 HOH HOH . D 4 HOH A 23 923 38 HOH HOH . D 4 HOH A 24 924 191 HOH HOH . D 4 HOH A 25 925 67 HOH HOH . D 4 HOH A 26 926 153 HOH HOH . D 4 HOH A 27 927 48 HOH HOH . D 4 HOH A 28 928 6 HOH HOH . D 4 HOH A 29 929 5 HOH HOH . D 4 HOH A 30 930 72 HOH HOH . D 4 HOH A 31 931 47 HOH HOH . D 4 HOH A 32 932 12 HOH HOH . D 4 HOH A 33 933 167 HOH HOH . D 4 HOH A 34 934 16 HOH HOH . D 4 HOH A 35 935 28 HOH HOH . D 4 HOH A 36 936 151 HOH HOH . D 4 HOH A 37 937 9 HOH HOH . D 4 HOH A 38 938 93 HOH HOH . D 4 HOH A 39 939 57 HOH HOH . D 4 HOH A 40 940 144 HOH HOH . D 4 HOH A 41 941 100 HOH HOH . D 4 HOH A 42 942 31 HOH HOH . D 4 HOH A 43 943 20 HOH HOH . D 4 HOH A 44 944 89 HOH HOH . D 4 HOH A 45 945 180 HOH HOH . D 4 HOH A 46 946 119 HOH HOH . D 4 HOH A 47 947 17 HOH HOH . D 4 HOH A 48 948 114 HOH HOH . D 4 HOH A 49 949 109 HOH HOH . D 4 HOH A 50 950 82 HOH HOH . D 4 HOH A 51 951 73 HOH HOH . D 4 HOH A 52 952 74 HOH HOH . D 4 HOH A 53 953 43 HOH HOH . D 4 HOH A 54 954 162 HOH HOH . D 4 HOH A 55 955 53 HOH HOH . D 4 HOH A 56 956 171 HOH HOH . D 4 HOH A 57 957 2 HOH HOH . D 4 HOH A 58 958 62 HOH HOH . D 4 HOH A 59 959 63 HOH HOH . D 4 HOH A 60 960 80 HOH HOH . D 4 HOH A 61 961 187 HOH HOH . D 4 HOH A 62 962 56 HOH HOH . D 4 HOH A 63 963 69 HOH HOH . D 4 HOH A 64 964 14 HOH HOH . D 4 HOH A 65 965 150 HOH HOH . D 4 HOH A 66 966 24 HOH HOH . D 4 HOH A 67 967 68 HOH HOH . D 4 HOH A 68 968 44 HOH HOH . D 4 HOH A 69 969 104 HOH HOH . D 4 HOH A 70 970 143 HOH HOH . D 4 HOH A 71 971 129 HOH HOH . D 4 HOH A 72 972 78 HOH HOH . D 4 HOH A 73 973 175 HOH HOH . D 4 HOH A 74 974 173 HOH HOH . D 4 HOH A 75 975 46 HOH HOH . D 4 HOH A 76 976 34 HOH HOH . D 4 HOH A 77 977 55 HOH HOH . D 4 HOH A 78 978 132 HOH HOH . D 4 HOH A 79 979 60 HOH HOH . D 4 HOH A 80 980 194 HOH HOH . D 4 HOH A 81 981 22 HOH HOH . D 4 HOH A 82 982 13 HOH HOH . D 4 HOH A 83 983 1 HOH HOH . D 4 HOH A 84 984 25 HOH HOH . D 4 HOH A 85 985 163 HOH HOH . D 4 HOH A 86 986 65 HOH HOH . D 4 HOH A 87 987 11 HOH HOH . D 4 HOH A 88 988 111 HOH HOH . D 4 HOH A 89 989 96 HOH HOH . D 4 HOH A 90 990 128 HOH HOH . D 4 HOH A 91 991 52 HOH HOH . D 4 HOH A 92 992 142 HOH HOH . D 4 HOH A 93 993 160 HOH HOH . D 4 HOH A 94 994 21 HOH HOH . D 4 HOH A 95 995 170 HOH HOH . D 4 HOH A 96 996 184 HOH HOH . D 4 HOH A 97 997 115 HOH HOH . D 4 HOH A 98 998 130 HOH HOH . D 4 HOH A 99 999 185 HOH HOH . D 4 HOH A 100 1000 127 HOH HOH . D 4 HOH A 101 1001 7 HOH HOH . D 4 HOH A 102 1002 45 HOH HOH . D 4 HOH A 103 1003 156 HOH HOH . D 4 HOH A 104 1004 37 HOH HOH . D 4 HOH A 105 1005 49 HOH HOH . D 4 HOH A 106 1006 81 HOH HOH . D 4 HOH A 107 1007 172 HOH HOH . D 4 HOH A 108 1008 35 HOH HOH . D 4 HOH A 109 1009 91 HOH HOH . D 4 HOH A 110 1010 18 HOH HOH . D 4 HOH A 111 1011 58 HOH HOH . D 4 HOH A 112 1012 105 HOH HOH . D 4 HOH A 113 1013 183 HOH HOH . D 4 HOH A 114 1014 30 HOH HOH . D 4 HOH A 115 1015 113 HOH HOH . D 4 HOH A 116 1016 186 HOH HOH . D 4 HOH A 117 1017 189 HOH HOH . D 4 HOH A 118 1018 50 HOH HOH . D 4 HOH A 119 1019 33 HOH HOH . D 4 HOH A 120 1020 39 HOH HOH . D 4 HOH A 121 1021 66 HOH HOH . D 4 HOH A 122 1022 23 HOH HOH . D 4 HOH A 123 1023 36 HOH HOH . D 4 HOH A 124 1024 122 HOH HOH . D 4 HOH A 125 1025 107 HOH HOH . D 4 HOH A 126 1026 137 HOH HOH . D 4 HOH A 127 1027 32 HOH HOH . D 4 HOH A 128 1028 83 HOH HOH . D 4 HOH A 129 1029 70 HOH HOH . D 4 HOH A 130 1030 176 HOH HOH . D 4 HOH A 131 1031 110 HOH HOH . D 4 HOH A 132 1032 99 HOH HOH . D 4 HOH A 133 1033 168 HOH HOH . D 4 HOH A 134 1034 178 HOH HOH . D 4 HOH A 135 1035 88 HOH HOH . D 4 HOH A 136 1036 98 HOH HOH . D 4 HOH A 137 1037 146 HOH HOH . D 4 HOH A 138 1038 192 HOH HOH . D 4 HOH A 139 1039 59 HOH HOH . D 4 HOH A 140 1040 154 HOH HOH . D 4 HOH A 141 1041 19 HOH HOH . D 4 HOH A 142 1042 164 HOH HOH . D 4 HOH A 143 1043 158 HOH HOH . D 4 HOH A 144 1044 103 HOH HOH . D 4 HOH A 145 1045 84 HOH HOH . D 4 HOH A 146 1046 138 HOH HOH . D 4 HOH A 147 1047 124 HOH HOH . D 4 HOH A 148 1048 102 HOH HOH . D 4 HOH A 149 1049 181 HOH HOH . D 4 HOH A 150 1050 179 HOH HOH . D 4 HOH A 151 1051 71 HOH HOH . D 4 HOH A 152 1052 177 HOH HOH . D 4 HOH A 153 1053 145 HOH HOH . D 4 HOH A 154 1054 106 HOH HOH . D 4 HOH A 155 1055 116 HOH HOH . D 4 HOH A 156 1056 120 HOH HOH . D 4 HOH A 157 1057 135 HOH HOH . D 4 HOH A 158 1058 95 HOH HOH . D 4 HOH A 159 1059 125 HOH HOH . D 4 HOH A 160 1060 165 HOH HOH . D 4 HOH A 161 1061 141 HOH HOH . D 4 HOH A 162 1062 79 HOH HOH . D 4 HOH A 163 1063 77 HOH HOH . D 4 HOH A 164 1064 159 HOH HOH . D 4 HOH A 165 1065 166 HOH HOH . D 4 HOH A 166 1066 147 HOH HOH . D 4 HOH A 167 1067 101 HOH HOH . D 4 HOH A 168 1068 190 HOH HOH . D 4 HOH A 169 1069 121 HOH HOH . D 4 HOH A 170 1070 193 HOH HOH . D 4 HOH A 171 1071 140 HOH HOH . D 4 HOH A 172 1072 169 HOH HOH . D 4 HOH A 173 1073 136 HOH HOH . D 4 HOH A 174 1074 157 HOH HOH . D 4 HOH A 175 1075 40 HOH HOH . D 4 HOH A 176 1076 161 HOH HOH . D 4 HOH A 177 1077 118 HOH HOH . D 4 HOH A 178 1078 64 HOH HOH . D 4 HOH A 179 1079 155 HOH HOH . D 4 HOH A 180 1080 108 HOH HOH . D 4 HOH A 181 1081 92 HOH HOH . D 4 HOH A 182 1082 26 HOH HOH . D 4 HOH A 183 1083 97 HOH HOH . D 4 HOH A 184 1084 117 HOH HOH . D 4 HOH A 185 1085 149 HOH HOH . D 4 HOH A 186 1086 112 HOH HOH . D 4 HOH A 187 1087 131 HOH HOH . D 4 HOH A 188 1088 42 HOH HOH . D 4 HOH A 189 1089 86 HOH HOH . D 4 HOH A 190 1090 174 HOH HOH . D 4 HOH A 191 1091 75 HOH HOH . D 4 HOH A 192 1092 148 HOH HOH . D 4 HOH A 193 1093 54 HOH HOH . D 4 HOH A 194 1094 90 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 MMA . . . C 3 -8.164 15.485 11.607 1 20.22 ? C1 MMA 802 A 1 HETATM 2 C C2 MMA . . . C 3 -8.263 14.049 11.149 1 17.36 ? C2 MMA 802 A 1 HETATM 3 C C3 MMA . . . C 3 -8.658 13.143 12.267 1 14.06 ? C3 MMA 802 A 1 HETATM 4 C C4 MMA . . . C 3 -7.764 13.266 13.46 1 15.2 ? C4 MMA 802 A 1 HETATM 5 C C5 MMA . . . C 3 -7.802 14.719 13.932 1 20.42 ? C5 MMA 802 A 1 HETATM 6 C C6 MMA . . . C 3 -6.92 14.916 15.126 1 25.12 ? C6 MMA 802 A 1 HETATM 7 C C7 MMA . . . C 3 -9.544 17.304 12.021 1 23.57 ? C7 MMA 802 A 1 HETATM 8 O O1 MMA . . . C 3 -9.426 15.907 11.861 1 22.5 ? O1 MMA 802 A 1 HETATM 9 O O2 MMA . . . C 3 -6.973 13.685 10.618 1 18.48 ? O2 MMA 802 A 1 HETATM 10 O O3 MMA . . . C 3 -8.622 11.76 11.834 1 10.1 ? O3 MMA 802 A 1 HETATM 11 O O4 MMA . . . C 3 -8.209 12.355 14.483 1 11.9 ? O4 MMA 802 A 1 HETATM 12 O O5 MMA . . . C 3 -7.334 15.603 12.85 1 21.29 ? O5 MMA 802 A 1 HETATM 13 O O6 MMA . . . C 3 -7.005 16.254 15.537 1 28.99 ? O6 MMA 802 A 1 # _model_server_stats.io_time_ms 10 _model_server_stats.parse_time_ms 19 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 297 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 13 #