data_7JUH # _model_server_result.job_id bYgHwoCNO_cf27GmWcn0GA _model_server_result.datetime_utc '2024-10-15 15:27:09' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7juh # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":803}' # _entry.id 7JUH # _exptl.entry_id 7JUH _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 180.156 _entity.id 3 _entity.src_method man _entity.type non-polymer _entity.pdbx_description alpha-D-mannopyranose _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 114.48 _cell.angle_gamma 90 _cell.entry_id 7JUH _cell.length_a 31.922 _cell.length_b 59.04 _cell.length_c 34.846 _cell.Z_PDB 2 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7JUH _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id D _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 36 A CYS 662 1_555 A SG CYS 133 A CYS 759 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.047 ? disulf ? disulf2 A SG CYS 109 A CYS 735 1_555 A SG CYS 125 A CYS 751 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.042 ? metalc ? metalc1 A O SER 45 A SER 671 1_555 C CA CA . A CA 802 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.518 ? metalc ? metalc2 A OG SER 45 A SER 671 1_555 C CA CA . A CA 802 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.538 ? metalc ? metalc3 A OD1 ASN 47 A ASN 673 1_555 C CA CA . A CA 802 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.252 ? metalc ? metalc4 A OE1 GLU 51 A GLU 677 1_555 C CA CA . A CA 802 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.436 ? metalc ? metalc5 A OE2 GLU 51 A GLU 677 1_555 C CA CA . A CA 802 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.457 ? metalc ? metalc6 A OE1 GLU 99 A GLU 725 1_555 B CA CA . A CA 801 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.529 ? metalc ? metalc7 A OD1 ASN 101 A ASN 727 1_555 B CA CA . A CA 801 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.37 ? metalc ? metalc8 A OE1 GLU 107 A GLU 733 1_555 B CA CA . A CA 801 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.473 ? metalc ? metalc9 A OD1 ASN 121 A ASN 747 1_555 B CA CA . A CA 801 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.419 ? metalc ? metalc10 A O ASP 122 A ASP 748 1_555 B CA CA . A CA 801 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.427 ? metalc ? metalc11 A OD1 ASP 122 A ASP 748 1_555 B CA CA . A CA 801 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.38 ? metalc ? metalc12 B CA CA . A CA 801 1_555 D O3 MAN . A MAN 803 1_555 ? ? ? ? A ? ? ? ? ? ? ? 2.539 ? metalc ? metalc13 B CA CA . A CA 801 1_555 D O3 MAN . A MAN 803 1_555 ? ? ? ? B ? ? ? ? ? ? ? 2.496 ? metalc ? metalc14 B CA CA . A CA 801 1_555 D O4 MAN . A MAN 803 1_555 ? ? ? ? A ? ? ? ? ? ? ? 2.551 ? metalc ? metalc15 B CA CA . A CA 801 1_555 D O4 MAN . A MAN 803 1_555 ? ? ? ? B ? ? ? ? ? ? ? 2.536 ? metalc ? metalc16 C CA CA . A CA 802 1_555 E O HOH . A HOH 909 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.272 ? metalc ? metalc17 C CA CA . A CA 802 1_555 E O HOH . A HOH 980 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.344 ? # _chem_comp.formula 'C6 H12 O6' _chem_comp.formula_weight 180.156 _chem_comp.id MAN _chem_comp.mon_nstd_flag . _chem_comp.name alpha-D-mannopyranose _chem_comp.type 'd-saccharide, alpha linking' _chem_comp.pdbx_synonyms alpha-D-mannose;D-mannose;mannose # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 MAN sing 218 n n C1 O1 MAN sing 219 n n C1 O5 MAN sing 220 n n C1 H1 MAN sing 221 n n C2 C3 MAN sing 222 n n C2 O2 MAN sing 223 n n C2 H2 MAN sing 224 n n C3 C4 MAN sing 225 n n C3 O3 MAN sing 226 n n C3 H3 MAN sing 227 n n C4 C5 MAN sing 228 n n C4 O4 MAN sing 229 n n C4 H4 MAN sing 230 n n C5 C6 MAN sing 231 n n C5 O5 MAN sing 232 n n C5 H5 MAN sing 233 n n C6 O6 MAN sing 234 n n C6 H61 MAN sing 235 n n C6 H62 MAN sing 236 n n O1 HO1 MAN sing 237 n n O2 HO2 MAN sing 238 n n O3 HO3 MAN sing 239 n n O4 HO4 MAN sing 240 n n O6 HO6 MAN sing 241 n n # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.identifier _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version MAN DManpa 'CONDENSED IUPAC CARBOHYDRATE SYMBOL' GMML 1 MAN a-D-mannopyranose 'COMMON NAME' GMML 1 MAN a-D-Manp 'IUPAC CARBOHYDRATE SYMBOL' PDB-CARE 1 MAN Man 'SNFG CARBOHYDRATE SYMBOL' GMML 1 # _atom_sites.entry_id 7JUH _atom_sites.fract_transf_matrix[1][1] 0.031326 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.014266 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.016938 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.031534 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 CA A 1 801 800 CA CA . C 2 CA A 1 802 801 CA CA . D 3 MAN A 1 803 900 MAN MAN . E 4 HOH A 1 901 75 HOH HOH . E 4 HOH A 2 902 82 HOH HOH . E 4 HOH A 3 903 47 HOH HOH . E 4 HOH A 4 904 36 HOH HOH . E 4 HOH A 5 905 73 HOH HOH . E 4 HOH A 6 906 71 HOH HOH . E 4 HOH A 7 907 30 HOH HOH . E 4 HOH A 8 908 65 HOH HOH . E 4 HOH A 9 909 2 HOH HOH . E 4 HOH A 10 910 15 HOH HOH . E 4 HOH A 11 911 67 HOH HOH . E 4 HOH A 12 912 10 HOH HOH . E 4 HOH A 13 913 53 HOH HOH . E 4 HOH A 14 914 46 HOH HOH . E 4 HOH A 15 915 7 HOH HOH . E 4 HOH A 16 916 77 HOH HOH . E 4 HOH A 17 917 4 HOH HOH . E 4 HOH A 18 918 50 HOH HOH . E 4 HOH A 19 919 98 HOH HOH . E 4 HOH A 20 920 24 HOH HOH . E 4 HOH A 21 921 63 HOH HOH . E 4 HOH A 22 922 17 HOH HOH . E 4 HOH A 23 923 97 HOH HOH . E 4 HOH A 24 924 33 HOH HOH . E 4 HOH A 25 925 21 HOH HOH . E 4 HOH A 26 926 20 HOH HOH . E 4 HOH A 27 927 31 HOH HOH . E 4 HOH A 28 928 14 HOH HOH . E 4 HOH A 29 929 9 HOH HOH . E 4 HOH A 30 930 52 HOH HOH . E 4 HOH A 31 931 62 HOH HOH . E 4 HOH A 32 932 12 HOH HOH . E 4 HOH A 33 933 68 HOH HOH . E 4 HOH A 34 934 16 HOH HOH . E 4 HOH A 35 935 41 HOH HOH . E 4 HOH A 36 936 18 HOH HOH . E 4 HOH A 37 937 40 HOH HOH . E 4 HOH A 38 938 51 HOH HOH . E 4 HOH A 39 939 6 HOH HOH . E 4 HOH A 40 940 70 HOH HOH . E 4 HOH A 41 941 96 HOH HOH . E 4 HOH A 42 942 57 HOH HOH . E 4 HOH A 43 943 59 HOH HOH . E 4 HOH A 44 944 60 HOH HOH . E 4 HOH A 45 945 74 HOH HOH . E 4 HOH A 46 946 100 HOH HOH . E 4 HOH A 47 947 29 HOH HOH . E 4 HOH A 48 948 5 HOH HOH . E 4 HOH A 49 949 37 HOH HOH . E 4 HOH A 50 950 3 HOH HOH . E 4 HOH A 51 951 39 HOH HOH . E 4 HOH A 52 952 66 HOH HOH . E 4 HOH A 53 953 83 HOH HOH . E 4 HOH A 54 954 22 HOH HOH . E 4 HOH A 55 955 32 HOH HOH . E 4 HOH A 56 956 99 HOH HOH . E 4 HOH A 57 957 56 HOH HOH . E 4 HOH A 58 958 34 HOH HOH . E 4 HOH A 59 959 25 HOH HOH . E 4 HOH A 60 960 92 HOH HOH . E 4 HOH A 61 961 27 HOH HOH . E 4 HOH A 62 962 64 HOH HOH . E 4 HOH A 63 963 61 HOH HOH . E 4 HOH A 64 964 35 HOH HOH . E 4 HOH A 65 965 38 HOH HOH . E 4 HOH A 66 966 13 HOH HOH . E 4 HOH A 67 967 55 HOH HOH . E 4 HOH A 68 968 8 HOH HOH . E 4 HOH A 69 969 45 HOH HOH . E 4 HOH A 70 970 11 HOH HOH . E 4 HOH A 71 971 80 HOH HOH . E 4 HOH A 72 972 49 HOH HOH . E 4 HOH A 73 973 76 HOH HOH . E 4 HOH A 74 974 23 HOH HOH . E 4 HOH A 75 975 72 HOH HOH . E 4 HOH A 76 976 26 HOH HOH . E 4 HOH A 77 977 90 HOH HOH . E 4 HOH A 78 978 43 HOH HOH . E 4 HOH A 79 979 87 HOH HOH . E 4 HOH A 80 980 1 HOH HOH . E 4 HOH A 81 981 81 HOH HOH . E 4 HOH A 82 982 44 HOH HOH . E 4 HOH A 83 983 91 HOH HOH . E 4 HOH A 84 984 42 HOH HOH . E 4 HOH A 85 985 19 HOH HOH . E 4 HOH A 86 986 94 HOH HOH . E 4 HOH A 87 987 78 HOH HOH . E 4 HOH A 88 988 28 HOH HOH . E 4 HOH A 89 989 48 HOH HOH . E 4 HOH A 90 990 85 HOH HOH . E 4 HOH A 91 991 93 HOH HOH . E 4 HOH A 92 992 89 HOH HOH . E 4 HOH A 93 993 88 HOH HOH . E 4 HOH A 94 994 58 HOH HOH . E 4 HOH A 95 995 95 HOH HOH . E 4 HOH A 96 996 69 HOH HOH . E 4 HOH A 97 997 79 HOH HOH . E 4 HOH A 98 998 84 HOH HOH . E 4 HOH A 99 999 86 HOH HOH . E 4 HOH A 100 1000 54 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 MAN . A . D 3 23.502 -12.059 2.533 0.75 31.36 ? C1 MAN 803 A 1 HETATM 2 C C1 MAN . B . D 3 22.799 -12.106 1.502 0.25 21.69 ? C1 MAN 803 A 1 HETATM 3 C C2 MAN . A . D 3 24.397 -10.822 2.666 0.75 27.15 ? C2 MAN 803 A 1 HETATM 4 C C2 MAN . B . D 3 21.991 -10.886 1.026 0.25 19.57 ? C2 MAN 803 A 1 HETATM 5 C C3 MAN . A . D 3 23.606 -9.556 2.306 0.75 21.45 ? C3 MAN 803 A 1 HETATM 6 C C3 MAN . B . D 3 22.876 -9.642 1.042 0.25 16.93 ? C3 MAN 803 A 1 HETATM 7 C C4 MAN . A . D 3 22.915 -9.697 0.97 0.75 22.35 ? C4 MAN 803 A 1 HETATM 8 C C4 MAN . B . D 3 23.552 -9.472 2.399 0.25 16.72 ? C4 MAN 803 A 1 HETATM 9 C C5 MAN . A . D 3 22.014 -10.947 0.965 0.75 29.01 ? C5 MAN 803 A 1 HETATM 10 C C5 MAN . B . D 3 24.344 -10.749 2.753 0.25 19.19 ? C5 MAN 803 A 1 HETATM 11 C C6 MAN . A . D 3 21.367 -11.199 -0.386 0.75 30.76 ? C6 MAN 803 A 1 HETATM 12 C C6 MAN . B . D 3 24.986 -10.7 4.127 0.25 20.5 ? C6 MAN 803 A 1 HETATM 13 O O1 MAN . A . D 3 22.635 -12.021 3.648 0.75 33.92 ? O1 MAN 803 A 1 HETATM 14 O O1 MAN . B . D 3 23.706 -12.395 0.465 0.25 23.08 ? O1 MAN 803 A 1 HETATM 15 O O2 MAN . A . D 3 25.486 -10.872 1.744 0.75 28.73 ? O2 MAN 803 A 1 HETATM 16 O O2 MAN . B . D 3 20.922 -10.595 1.923 0.25 18.43 ? O2 MAN 803 A 1 HETATM 17 O O3 MAN . A . D 3 24.432 -8.403 2.254 0.75 17.33 ? O3 MAN 803 A 1 HETATM 18 O O3 MAN . B . D 3 22.146 -8.46 0.728 0.25 14.87 ? O3 MAN 803 A 1 HETATM 19 O O4 MAN . A . D 3 22.138 -8.525 0.759 0.75 17.24 ? O4 MAN 803 A 1 HETATM 20 O O4 MAN . B . D 3 24.423 -8.354 2.339 0.25 15.29 ? O4 MAN 803 A 1 HETATM 21 O O5 MAN . A . D 3 22.815 -12.114 1.293 0.75 31.58 ? O5 MAN 803 A 1 HETATM 22 O O5 MAN . B . D 3 23.447 -11.884 2.731 0.25 20.84 ? O5 MAN 803 A 1 HETATM 23 O O6 MAN . A . D 3 20.519 -12.342 -0.273 0.75 33.35 ? O6 MAN 803 A 1 HETATM 24 O O6 MAN . B . D 3 25.804 -11.862 4.274 0.25 21.52 ? O6 MAN 803 A 1 # _model_server_stats.io_time_ms 9 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 292 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 24 #