data_7JUQ # _model_server_result.job_id iF16ejWBScpYKMoc71WEsA _model_server_result.datetime_utc '2025-02-17 14:59:02' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7juq # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":1001}' # _entry.id 7JUQ # _exptl.entry_id 7JUQ _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 427.201 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description "ADENOSINE-5'-DIPHOSPHATE" _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 7JUQ _cell.length_a 139 _cell.length_b 139 _cell.length_c 222 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7JUQ _symmetry.cell_setting ? _symmetry.Int_Tables_number 178 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 61 2 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 C N N ? 3 E N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OD1 ASN 183 B ASN 791 1_555 D MG MG . B MG 1002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.004 ? metalc ? metalc2 A OD2 ASP 195 B ASP 803 1_555 D MG MG . B MG 1002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.136 ? metalc ? metalc3 C O2A ADP . B ADP 1001 1_555 D MG MG . B MG 1002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.051 ? # _chem_comp.formula 'C10 H15 N5 O10 P2' _chem_comp.formula_weight 427.201 _chem_comp.id ADP _chem_comp.mon_nstd_flag n _chem_comp.name "ADENOSINE-5'-DIPHOSPHATE" _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PB O1B ADP doub 1 n n PB O2B ADP sing 2 n n PB O3B ADP sing 3 n n PB O3A ADP sing 4 n n O2B HOB2 ADP sing 5 n n O3B HOB3 ADP sing 6 n n PA O1A ADP doub 7 n n PA O2A ADP sing 8 n n PA O3A ADP sing 9 n n PA O5' ADP sing 10 n n O2A HOA2 ADP sing 11 n n O5' C5' ADP sing 12 n n C5' C4' ADP sing 13 n n C5' "H5'1" ADP sing 14 n n C5' "H5'2" ADP sing 15 n n C4' O4' ADP sing 16 n n C4' C3' ADP sing 17 n n C4' H4' ADP sing 18 n n O4' C1' ADP sing 19 n n C3' O3' ADP sing 20 n n C3' C2' ADP sing 21 n n C3' H3' ADP sing 22 n n O3' HO3' ADP sing 23 n n C2' O2' ADP sing 24 n n C2' C1' ADP sing 25 n n C2' H2' ADP sing 26 n n O2' HO2' ADP sing 27 n n C1' N9 ADP sing 28 n n C1' H1' ADP sing 29 n n N9 C8 ADP sing 30 n y N9 C4 ADP sing 31 n y C8 N7 ADP doub 32 n y C8 H8 ADP sing 33 n n N7 C5 ADP sing 34 n y C5 C6 ADP sing 35 n y C5 C4 ADP doub 36 n y C6 N6 ADP sing 37 n n C6 N1 ADP doub 38 n y N6 HN61 ADP sing 39 n n N6 HN62 ADP sing 40 n n N1 C2 ADP sing 41 n y C2 N3 ADP doub 42 n y C2 H2 ADP sing 43 n n N3 C4 ADP sing 44 n y # _atom_sites.entry_id 7JUQ _atom_sites.fract_transf_matrix[1][1] 0.007194 _atom_sites.fract_transf_matrix[1][2] 0.004154 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.008307 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.004505 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 ADP B 1 1001 1001 ADP ADP . D 4 MG B 1 1002 1 MG MG . E 3 ADP C 1 401 401 ADP ADP . F 5 HOH B 1 1101 2 HOH HOH . F 5 HOH B 2 1102 1 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PB ADP . . . C 3 -62.639 57.33 -3.448 1 105.65 ? PB ADP 1001 B 1 HETATM 2 O O1B ADP . . . C 3 -61.753 56.153 -3.77 1 101.52 ? O1B ADP 1001 B 1 HETATM 3 O O2B ADP . . . C 3 -63.861 56.969 -2.636 1 76.69 ? O2B ADP 1001 B 1 HETATM 4 O O3B ADP . . . C 3 -61.874 58.547 -2.984 1 103.53 ? O3B ADP 1001 B 1 HETATM 5 P PA ADP . . . C 3 -64.009 56.792 -5.84 1 106.3 ? PA ADP 1001 B 1 HETATM 6 O O1A ADP . . . C 3 -64.091 57.392 -7.223 1 96.15 ? O1A ADP 1001 B 1 HETATM 7 O O2A ADP . . . C 3 -63.518 55.383 -5.607 1 84.88 ? O2A ADP 1001 B 1 HETATM 8 O O3A ADP . . . C 3 -63.265 57.817 -4.849 1 124.03 ? O3A ADP 1001 B 1 HETATM 9 O O5' ADP . . . C 3 -65.485 56.824 -5.224 1 93.77 ? O5' ADP 1001 B 1 HETATM 10 C C5' ADP . . . C 3 -66.436 57.83 -5.546 1 82.31 ? C5' ADP 1001 B 1 HETATM 11 C C4' ADP . . . C 3 -67.693 57.486 -4.758 1 91.07 ? C4' ADP 1001 B 1 HETATM 12 O O4' ADP . . . C 3 -68.497 56.599 -5.534 1 90.81 ? O4' ADP 1001 B 1 HETATM 13 C C3' ADP . . . C 3 -67.367 56.766 -3.456 1 95.35 ? C3' ADP 1001 B 1 HETATM 14 O O3' ADP . . . C 3 -68.195 57.287 -2.415 1 94.53 ? O3' ADP 1001 B 1 HETATM 15 C C2' ADP . . . C 3 -67.735 55.316 -3.694 1 81.91 ? C2' ADP 1001 B 1 HETATM 16 O O2' ADP . . . C 3 -68.28 54.712 -2.518 1 95.63 ? O2' ADP 1001 B 1 HETATM 17 C C1' ADP . . . C 3 -68.765 55.397 -4.807 1 79.53 ? C1' ADP 1001 B 1 HETATM 18 N N9 ADP . . . C 3 -68.689 54.22 -5.707 1 74.5 ? N9 ADP 1001 B 1 HETATM 19 C C8 ADP . . . C 3 -67.736 53.96 -6.622 1 80.53 ? C8 ADP 1001 B 1 HETATM 20 N N7 ADP . . . C 3 -67.989 52.791 -7.268 1 87.12 ? N7 ADP 1001 B 1 HETATM 21 C C5 ADP . . . C 3 -69.131 52.287 -6.759 1 75.29 ? C5 ADP 1001 B 1 HETATM 22 C C6 ADP . . . C 3 -69.972 51.086 -6.978 1 78.76 ? C6 ADP 1001 B 1 HETATM 23 N N6 ADP . . . C 3 -69.638 50.154 -7.903 1 76.17 ? N6 ADP 1001 B 1 HETATM 24 N N1 ADP . . . C 3 -71.087 50.948 -6.226 1 83.33 ? N1 ADP 1001 B 1 HETATM 25 C C2 ADP . . . C 3 -71.436 51.862 -5.303 1 87.03 ? C2 ADP 1001 B 1 HETATM 26 N N3 ADP . . . C 3 -70.723 52.972 -5.051 1 85.35 ? N3 ADP 1001 B 1 HETATM 27 C C4 ADP . . . C 3 -69.583 53.234 -5.731 1 72.39 ? C4 ADP 1001 B 1 # _model_server_stats.io_time_ms 24 _model_server_stats.parse_time_ms 59 _model_server_stats.create_model_time_ms 18 _model_server_stats.query_time_ms 908 _model_server_stats.encode_time_ms 11 _model_server_stats.element_count 27 #