data_7JUS # _model_server_result.job_id bfo-bHSFrbQFsbyDEn41Hg _model_server_result.datetime_utc '2024-11-07 18:43:46' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7jus # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":1001}' # _entry.id 7JUS # _exptl.entry_id 7JUS _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 506.196 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'PHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 7JUS _cell.length_a 140 _cell.length_b 140 _cell.length_c 220 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7JUS _symmetry.cell_setting ? _symmetry.Int_Tables_number 178 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 61 2 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 C N N ? 3 F N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OD1 ASN 183 B ASN 791 1_555 D MG MG . B MG 1002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.281 ? metalc ? metalc2 A OD1 ASP 195 B ASP 803 1_555 D MG MG . B MG 1002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.211 ? metalc ? metalc3 C O2B ANP . B ANP 1001 1_555 D MG MG . B MG 1002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.088 ? metalc ? metalc4 C O2A ANP . B ANP 1001 1_555 D MG MG . B MG 1002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.071 ? metalc ? metalc5 D MG MG . B MG 1002 1_555 H O HOH . B HOH 1102 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.236 ? metalc ? metalc6 D MG MG . B MG 1002 1_555 H O HOH . B HOH 1104 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.365 ? metalc ? metalc7 B OD1 ASN 186 C ASN 195 1_555 G MG MG . C MG 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.984 ? metalc ? metalc8 B OD1 ASP 199 C ASP 208 1_555 G MG MG . C MG 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.711 ? metalc ? metalc9 F O2G ANP . C ANP 502 1_555 G MG MG . C MG 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.369 ? metalc ? metalc10 F O3G ANP . C ANP 502 1_555 G MG MG . C MG 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.228 ? metalc ? metalc11 F O1B ANP . C ANP 502 1_555 G MG MG . C MG 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.348 ? metalc ? metalc12 F O1A ANP . C ANP 502 1_555 G MG MG . C MG 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.064 ? metalc ? metalc13 F O3A ANP . C ANP 502 1_555 G MG MG . C MG 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.69 ? # _chem_comp.formula 'C10 H17 N6 O12 P3' _chem_comp.formula_weight 506.196 _chem_comp.id ANP _chem_comp.mon_nstd_flag . _chem_comp.name 'PHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PG O1G ANP doub 13 n n PG O2G ANP sing 14 n n PG O3G ANP sing 15 n n PG N3B ANP sing 16 n n O2G HOG2 ANP sing 17 n n O3G HOG3 ANP sing 18 n n PB O1B ANP doub 19 n n PB O2B ANP sing 20 n n PB N3B ANP sing 21 n n PB O3A ANP sing 22 n n O2B HOB2 ANP sing 23 n n N3B HNB1 ANP sing 24 n n PA O1A ANP doub 25 n n PA O2A ANP sing 26 n n PA O3A ANP sing 27 n n PA O5' ANP sing 28 n n O2A HOA2 ANP sing 29 n n O5' C5' ANP sing 30 n n C5' C4' ANP sing 31 n n C5' "H5'1" ANP sing 32 n n C5' "H5'2" ANP sing 33 n n C4' O4' ANP sing 34 n n C4' C3' ANP sing 35 n n C4' H4' ANP sing 36 n n O4' C1' ANP sing 37 n n C3' O3' ANP sing 38 n n C3' C2' ANP sing 39 n n C3' H3' ANP sing 40 n n O3' HO3' ANP sing 41 n n C2' O2' ANP sing 42 n n C2' C1' ANP sing 43 n n C2' H2' ANP sing 44 n n O2' HO2' ANP sing 45 n n C1' N9 ANP sing 46 n n C1' H1' ANP sing 47 n n N9 C8 ANP sing 48 n y N9 C4 ANP sing 49 n y C8 N7 ANP doub 50 n y C8 H8 ANP sing 51 n n N7 C5 ANP sing 52 n y C5 C6 ANP sing 53 n y C5 C4 ANP doub 54 n y C6 N6 ANP sing 55 n n C6 N1 ANP doub 56 n y N6 HN61 ANP sing 57 n n N6 HN62 ANP sing 58 n n N1 C2 ANP sing 59 n y C2 N3 ANP doub 60 n y C2 H2 ANP sing 61 n n N3 C4 ANP sing 62 n y # _atom_sites.entry_id 7JUS _atom_sites.fract_transf_matrix[1][1] 0.007143 _atom_sites.fract_transf_matrix[1][2] 0.004124 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.008248 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.004545 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 ANP B 1 1001 1001 ANP ANP . D 4 MG B 1 1002 1 MG MG . E 5 VKD C 1 501 501 VKD COB . F 3 ANP C 1 502 401 ANP ANP . G 4 MG C 1 503 2 MG MG . H 6 HOH B 1 1101 4 HOH HOH . H 6 HOH B 2 1102 3 HOH HOH . H 6 HOH B 3 1103 10 HOH HOH . H 6 HOH B 4 1104 1 HOH HOH . H 6 HOH B 5 1105 6 HOH HOH . H 6 HOH B 6 1106 2 HOH HOH . H 6 HOH B 7 1107 5 HOH HOH . H 6 HOH B 8 1108 11 HOH HOH . H 6 HOH B 9 1109 8 HOH HOH . I 6 HOH C 1 601 9 HOH HOH . I 6 HOH C 2 602 7 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PG ANP . . . C 3 -61.168 59.316 -3.892 1 88.85 ? PG ANP 1001 B 1 HETATM 2 O O1G ANP . . . C 3 -61.597 60.686 -4.333 1 84.44 ? O1G ANP 1001 B 1 HETATM 3 O O2G ANP . . . C 3 -60.892 58.424 -5.165 1 93.86 ? O2G ANP 1001 B 1 HETATM 4 O O3G ANP . . . C 3 -59.833 59.409 -3.035 1 100.54 ? O3G ANP 1001 B 1 HETATM 5 P PB ANP . . . C 3 -63.574 57.81 -3.623 1 86.02 ? PB ANP 1001 B 1 HETATM 6 O O1B ANP . . . C 3 -64.697 57.623 -2.656 1 85.76 ? O1B ANP 1001 B 1 HETATM 7 O O2B ANP . . . C 3 -63.139 56.367 -4.013 1 93.4 ? O2B ANP 1001 B 1 HETATM 8 N N3B ANP . . . C 3 -62.318 58.617 -2.864 1 79.57 ? N3B ANP 1001 B 1 HETATM 9 P PA ANP . . . C 3 -64.975 57.996 -6.1 1 87.92 ? PA ANP 1001 B 1 HETATM 10 O O1A ANP . . . C 3 -65.11 59.052 -7.143 1 89.62 ? O1A ANP 1001 B 1 HETATM 11 O O2A ANP . . . C 3 -64.385 56.666 -6.581 1 78.55 ? O2A ANP 1001 B 1 HETATM 12 O O3A ANP . . . C 3 -64.041 58.591 -4.909 1 100.34 ? O3A ANP 1001 B 1 HETATM 13 O O5' ANP . . . C 3 -66.405 57.712 -5.489 1 76.17 ? O5' ANP 1001 B 1 HETATM 14 C C5' ANP . . . C 3 -67.429 58.731 -5.39 1 86.83 ? C5' ANP 1001 B 1 HETATM 15 C C4' ANP . . . C 3 -68.578 58.183 -4.577 1 86.71 ? C4' ANP 1001 B 1 HETATM 16 O O4' ANP . . . C 3 -69.278 57.177 -5.342 1 81.47 ? O4' ANP 1001 B 1 HETATM 17 C C3' ANP . . . C 3 -68.191 57.51 -3.262 1 89.98 ? C3' ANP 1001 B 1 HETATM 18 O O3' ANP . . . C 3 -69.166 57.761 -2.254 1 95.87 ? O3' ANP 1001 B 1 HETATM 19 C C2' ANP . . . C 3 -68.12 56.032 -3.651 1 83.23 ? C2' ANP 1001 B 1 HETATM 20 O O2' ANP . . . C 3 -68.337 55.199 -2.518 1 90.11 ? O2' ANP 1001 B 1 HETATM 21 C C1' ANP . . . C 3 -69.257 55.937 -4.67 1 86.07 ? C1' ANP 1001 B 1 HETATM 22 N N9 ANP . . . C 3 -69.103 54.861 -5.66 1 79.84 ? N9 ANP 1001 B 1 HETATM 23 C C8 ANP . . . C 3 -68.106 54.714 -6.577 1 84.58 ? C8 ANP 1001 B 1 HETATM 24 N N7 ANP . . . C 3 -68.215 53.631 -7.327 1 83.47 ? N7 ANP 1001 B 1 HETATM 25 C C5 ANP . . . C 3 -69.362 53.045 -6.85 1 68.73 ? C5 ANP 1001 B 1 HETATM 26 C C6 ANP . . . C 3 -70.042 51.844 -7.215 1 74.47 ? C6 ANP 1001 B 1 HETATM 27 N N6 ANP . . . C 3 -69.616 51.03 -8.184 1 78.01 ? N6 ANP 1001 B 1 HETATM 28 N N1 ANP . . . C 3 -71.172 51.527 -6.544 1 80.83 ? N1 ANP 1001 B 1 HETATM 29 C C2 ANP . . . C 3 -71.591 52.344 -5.571 1 78.38 ? C2 ANP 1001 B 1 HETATM 30 N N3 ANP . . . C 3 -71.041 53.486 -5.137 1 79.29 ? N3 ANP 1001 B 1 HETATM 31 C C4 ANP . . . C 3 -69.946 53.764 -5.817 1 74.21 ? C4 ANP 1001 B 1 # _model_server_stats.io_time_ms 11 _model_server_stats.parse_time_ms 13 _model_server_stats.create_model_time_ms 14 _model_server_stats.query_time_ms 330 _model_server_stats.encode_time_ms 6 _model_server_stats.element_count 31 #