data_7JUS # _model_server_result.job_id KkhHFaZJBgP4S_ydie-yjA _model_server_result.datetime_utc '2024-11-29 05:04:54' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7jus # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":501}' # _entry.id 7JUS # _exptl.entry_id 7JUS _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 531.31 _entity.id 5 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description Cobimetinib _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 7JUS _cell.length_a 140 _cell.length_b 140 _cell.length_c 220 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7JUS _symmetry.cell_setting ? _symmetry.Int_Tables_number 178 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 61 2 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 5 _struct_asym.id E _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OD1 ASN 183 B ASN 791 1_555 D MG MG . B MG 1002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.281 ? metalc ? metalc2 A OD1 ASP 195 B ASP 803 1_555 D MG MG . B MG 1002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.211 ? metalc ? metalc3 C O2B ANP . B ANP 1001 1_555 D MG MG . B MG 1002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.088 ? metalc ? metalc4 C O2A ANP . B ANP 1001 1_555 D MG MG . B MG 1002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.071 ? metalc ? metalc5 D MG MG . B MG 1002 1_555 H O HOH . B HOH 1102 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.236 ? metalc ? metalc6 D MG MG . B MG 1002 1_555 H O HOH . B HOH 1104 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.365 ? metalc ? metalc7 B OD1 ASN 186 C ASN 195 1_555 G MG MG . C MG 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.984 ? metalc ? metalc8 B OD1 ASP 199 C ASP 208 1_555 G MG MG . C MG 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.711 ? metalc ? metalc9 F O2G ANP . C ANP 502 1_555 G MG MG . C MG 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.369 ? metalc ? metalc10 F O3G ANP . C ANP 502 1_555 G MG MG . C MG 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.228 ? metalc ? metalc11 F O1B ANP . C ANP 502 1_555 G MG MG . C MG 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.348 ? metalc ? metalc12 F O1A ANP . C ANP 502 1_555 G MG MG . C MG 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.064 ? metalc ? metalc13 F O3A ANP . C ANP 502 1_555 G MG MG . C MG 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.69 ? # _chem_comp.formula 'C21 H21 F3 I N3 O2' _chem_comp.formula_weight 531.31 _chem_comp.id VKD _chem_comp.mon_nstd_flag . _chem_comp.name Cobimetinib _chem_comp.type non-polymer _chem_comp.pdbx_synonyms {3,4-difluoro-2-[(2-fluoro-4-iodophenyl)amino]phenyl}{3-hydroxy-3-[(2R)-piperidin-2-yl]azetidin-1-yl}methanone # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C25 C26 VKD sing 426 n n C25 C24 VKD sing 427 n n C26 C27 VKD sing 428 n n C27 C28 VKD sing 429 n n C24 N29 VKD sing 430 n n C24 C22 VKD sing 431 n n C21 C22 VKD sing 432 n n C21 N20 VKD sing 433 n n N29 C28 VKD sing 434 n n C22 O23 VKD sing 435 n n C22 C30 VKD sing 436 n n O01 C02 VKD doub 437 n n N20 C02 VKD sing 438 n n N20 C30 VKD sing 439 n n C02 C03 VKD sing 440 n n F19 C18 VKD sing 441 n n C03 C04 VKD doub 442 n y C03 C10 VKD sing 443 n y N11 C10 VKD sing 444 n n N11 C12 VKD sing 445 n n C04 C05 VKD sing 446 n y C18 C12 VKD doub 447 n y C18 C17 VKD sing 448 n y C10 C08 VKD doub 449 n y C12 C13 VKD sing 450 n y C17 C15 VKD doub 451 n y C05 C06 VKD doub 452 n y C08 C06 VKD sing 453 n y C08 F09 VKD sing 454 n n C06 F07 VKD sing 455 n n C13 C14 VKD doub 456 n y C15 C14 VKD sing 457 n y C15 I16 VKD sing 458 n n C25 H1 VKD sing 459 n n C25 H2 VKD sing 460 n n C26 H3 VKD sing 461 n n C26 H4 VKD sing 462 n n C27 H5 VKD sing 463 n n C27 H6 VKD sing 464 n n N29 H7 VKD sing 465 n n C30 H9 VKD sing 466 n n C30 H10 VKD sing 467 n n C13 H11 VKD sing 468 n n C14 H12 VKD sing 469 n n C17 H13 VKD sing 470 n n C04 H14 VKD sing 471 n n C05 H15 VKD sing 472 n n C21 H16 VKD sing 473 n n C21 H17 VKD sing 474 n n C24 H18 VKD sing 475 n n C28 H19 VKD sing 476 n n C28 H20 VKD sing 477 n n N11 H21 VKD sing 478 n n O23 H22 VKD sing 479 n n # _atom_sites.entry_id 7JUS _atom_sites.fract_transf_matrix[1][1] 0.007143 _atom_sites.fract_transf_matrix[1][2] 0.004124 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.008248 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.004545 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 ANP B 1 1001 1001 ANP ANP . D 4 MG B 1 1002 1 MG MG . E 5 VKD C 1 501 501 VKD COB . F 3 ANP C 1 502 401 ANP ANP . G 4 MG C 1 503 2 MG MG . H 6 HOH B 1 1101 4 HOH HOH . H 6 HOH B 2 1102 3 HOH HOH . H 6 HOH B 3 1103 10 HOH HOH . H 6 HOH B 4 1104 1 HOH HOH . H 6 HOH B 5 1105 6 HOH HOH . H 6 HOH B 6 1106 2 HOH HOH . H 6 HOH B 7 1107 5 HOH HOH . H 6 HOH B 8 1108 11 HOH HOH . H 6 HOH B 9 1109 8 HOH HOH . I 6 HOH C 1 601 9 HOH HOH . I 6 HOH C 2 602 7 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C25 VKD . . . E 5 -50.774 74.888 6.275 1 122.48 ? C25 VKD 501 C 1 HETATM 2 C C26 VKD . . . E 5 -49.365 74.452 6.438 1 123.94 ? C26 VKD 501 C 1 HETATM 3 C C27 VKD . . . E 5 -49.215 73.22 7.281 1 115.41 ? C27 VKD 501 C 1 HETATM 4 N N29 VKD . . . E 5 -51.349 73.72 8.44 1 110.49 ? N29 VKD 501 C 1 HETATM 5 C C30 VKD . . . E 5 -51.823 76.143 9.718 1 110.68 ? C30 VKD 501 C 1 HETATM 6 C C10 VKD . . . E 5 -55.36 78.41 11.668 1 112.7 ? C10 VKD 501 C 1 HETATM 7 C C12 VKD . . . E 5 -55.231 80.954 12.048 1 117.25 ? C12 VKD 501 C 1 HETATM 8 C C13 VKD . . . E 5 -54.875 80.78 13.377 1 122.39 ? C13 VKD 501 C 1 HETATM 9 C C14 VKD . . . E 5 -54.693 81.852 14.223 1 128.32 ? C14 VKD 501 C 1 HETATM 10 C C15 VKD . . . E 5 -54.837 83.14 13.735 1 140.75 ? C15 VKD 501 C 1 HETATM 11 C C17 VKD . . . E 5 -55.18 83.339 12.394 1 131.43 ? C17 VKD 501 C 1 HETATM 12 C C18 VKD . . . E 5 -55.378 82.245 11.551 1 118.96 ? C18 VKD 501 C 1 HETATM 13 C C02 VKD . . . E 5 -53.886 77.914 9.647 1 115.36 ? C02 VKD 501 C 1 HETATM 14 C C03 VKD . . . E 5 -54.615 77.488 10.934 1 110.13 ? C03 VKD 501 C 1 HETATM 15 C C04 VKD . . . E 5 -54.532 76.171 11.37 1 111.56 ? C04 VKD 501 C 1 HETATM 16 C C05 VKD . . . E 5 -55.17 75.749 12.526 1 117.92 ? C05 VKD 501 C 1 HETATM 17 C C06 VKD . . . E 5 -55.911 76.656 13.262 1 126.11 ? C06 VKD 501 C 1 HETATM 18 C C08 VKD . . . E 5 -56.015 77.978 12.833 1 121 ? C08 VKD 501 C 1 HETATM 19 C C21 VKD . . . E 5 -51.751 77.407 8.052 1 112.27 ? C21 VKD 501 C 1 HETATM 20 C C22 VKD . . . E 5 -51.108 76.13 8.447 1 117.62 ? C22 VKD 501 C 1 HETATM 21 C C24 VKD . . . E 5 -51.531 74.935 7.609 1 119.18 ? C24 VKD 501 C 1 HETATM 22 C C28 VKD . . . E 5 -49.931 73.317 8.615 1 104.86 ? C28 VKD 501 C 1 HETATM 23 F F07 VKD . . . E 5 -56.544 76.233 14.402 1 132.86 ? F07 VKD 501 C 1 HETATM 24 F F09 VKD . . . E 5 -56.761 78.841 13.588 1 121.71 ? F09 VKD 501 C 1 HETATM 25 F F19 VKD . . . E 5 -55.71 82.435 10.24 1 122.85 ? F19 VKD 501 C 1 HETATM 26 I I16 VKD . . . E 5 -54.517 84.732 15.092 1 202.62 ? I16 VKD 501 C 1 HETATM 27 N N11 VKD . . . E 5 -55.442 79.792 11.19 1 107.08 ? N11 VKD 501 C 1 HETATM 28 N N20 VKD . . . E 5 -52.667 77.255 9.204 1 117.07 ? N20 VKD 501 C 1 HETATM 29 O O01 VKD . . . E 5 -54.304 78.795 8.979 1 115.91 ? O01 VKD 501 C 1 HETATM 30 O O23 VKD . . . E 5 -49.74 76.287 8.65 1 125.71 ? O23 VKD 501 C 1 # _model_server_stats.io_time_ms 10 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 6 _model_server_stats.query_time_ms 273 _model_server_stats.encode_time_ms 10 _model_server_stats.element_count 30 #