data_7JUT # _model_server_result.job_id 2V_gexUYEAStS7N69VmP9Q _model_server_result.datetime_utc '2024-11-25 13:32:57' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7jut # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":401}' # _entry.id 7JUT # _exptl.entry_id 7JUT _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 506.196 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'PHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 7JUT _cell.length_a 138 _cell.length_b 138 _cell.length_c 220 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7JUT _symmetry.cell_setting ? _symmetry.Int_Tables_number 178 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 61 2 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 C N N ? 3 D N N # _chem_comp.formula 'C10 H17 N6 O12 P3' _chem_comp.formula_weight 506.196 _chem_comp.id ANP _chem_comp.mon_nstd_flag . _chem_comp.name 'PHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PG O1G ANP doub 57 n n PG O2G ANP sing 58 n n PG O3G ANP sing 59 n n PG N3B ANP sing 60 n n O2G HOG2 ANP sing 61 n n O3G HOG3 ANP sing 62 n n PB O1B ANP doub 63 n n PB O2B ANP sing 64 n n PB N3B ANP sing 65 n n PB O3A ANP sing 66 n n O2B HOB2 ANP sing 67 n n N3B HNB1 ANP sing 68 n n PA O1A ANP doub 69 n n PA O2A ANP sing 70 n n PA O3A ANP sing 71 n n PA O5' ANP sing 72 n n O2A HOA2 ANP sing 73 n n O5' C5' ANP sing 74 n n C5' C4' ANP sing 75 n n C5' "H5'1" ANP sing 76 n n C5' "H5'2" ANP sing 77 n n C4' O4' ANP sing 78 n n C4' C3' ANP sing 79 n n C4' H4' ANP sing 80 n n O4' C1' ANP sing 81 n n C3' O3' ANP sing 82 n n C3' C2' ANP sing 83 n n C3' H3' ANP sing 84 n n O3' HO3' ANP sing 85 n n C2' O2' ANP sing 86 n n C2' C1' ANP sing 87 n n C2' H2' ANP sing 88 n n O2' HO2' ANP sing 89 n n C1' N9 ANP sing 90 n n C1' H1' ANP sing 91 n n N9 C8 ANP sing 92 n y N9 C4 ANP sing 93 n y C8 N7 ANP doub 94 n y C8 H8 ANP sing 95 n n N7 C5 ANP sing 96 n y C5 C6 ANP sing 97 n y C5 C4 ANP doub 98 n y C6 N6 ANP sing 99 n n C6 N1 ANP doub 100 n y N6 HN61 ANP sing 101 n n N6 HN62 ANP sing 102 n n N1 C2 ANP sing 103 n y C2 N3 ANP doub 104 n y C2 H2 ANP sing 105 n n N3 C4 ANP sing 106 n y # _atom_sites.entry_id 7JUT _atom_sites.fract_transf_matrix[1][1] 0.007246 _atom_sites.fract_transf_matrix[1][2] 0.004184 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.008367 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.004545 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 ANP B 1 1001 1001 ANP ANP . D 3 ANP C 1 401 401 ANP ANP . E 4 3EW C 1 402 501 3EW ZSL . F 5 HOH B 1 1101 5 HOH HOH . F 5 HOH B 2 1102 1 HOH HOH . F 5 HOH B 3 1103 4 HOH HOH . F 5 HOH B 4 1104 2 HOH HOH . F 5 HOH B 5 1105 6 HOH HOH . F 5 HOH B 6 1106 7 HOH HOH . F 5 HOH B 7 1107 3 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PG ANP . . . D 3 -48.834 76.702 3.421 1 126.53 ? PG ANP 401 C 1 HETATM 2 O O1G ANP . . . D 3 -50.173 76.36 2.849 1 131.51 ? O1G ANP 401 C 1 HETATM 3 O O2G ANP . . . D 3 -47.927 75.412 3.461 1 130.58 ? O2G ANP 401 C 1 HETATM 4 O O3G ANP . . . D 3 -49.016 77.278 4.884 1 124.61 ? O3G ANP 401 C 1 HETATM 5 P PB ANP . . . D 3 -48.809 79.357 2.795 1 131.91 ? PB ANP 401 C 1 HETATM 6 O O1B ANP . . . D 3 -48.354 80.374 1.8 1 120.65 ? O1B ANP 401 C 1 HETATM 7 O O2B ANP . . . D 3 -48.408 79.824 4.223 1 126.08 ? O2B ANP 401 C 1 HETATM 8 N N3B ANP . . . D 3 -48.098 77.879 2.458 1 119.13 ? N3B ANP 401 C 1 HETATM 9 P PA ANP . . . D 3 -51.223 79.83 3.92 1 134.91 ? PA ANP 401 C 1 HETATM 10 O O1A ANP . . . D 3 -52.588 79.257 3.943 1 123.13 ? O1A ANP 401 C 1 HETATM 11 O O2A ANP . . . D 3 -50.43 79.614 5.213 1 128.38 ? O2A ANP 401 C 1 HETATM 12 O O3A ANP . . . D 3 -50.36 79.215 2.74 1 135.01 ? O3A ANP 401 C 1 HETATM 13 O O5' ANP . . . D 3 -51.33 81.361 3.542 1 119.02 ? O5' ANP 401 C 1 HETATM 14 C C5' ANP . . . D 3 -51.212 81.78 2.166 1 120.17 ? C5' ANP 401 C 1 HETATM 15 C C4' ANP . . . D 3 -50.839 83.239 2.133 1 130.81 ? C4' ANP 401 C 1 HETATM 16 O O4' ANP . . . D 3 -51.793 83.984 2.903 1 137.06 ? O4' ANP 401 C 1 HETATM 17 C C3' ANP . . . D 3 -49.498 83.596 2.762 1 128.45 ? C3' ANP 401 C 1 HETATM 18 O O3' ANP . . . D 3 -48.436 83.439 1.828 1 133.02 ? O3' ANP 401 C 1 HETATM 19 C C2' ANP . . . D 3 -49.688 85.066 3.168 1 128.83 ? C2' ANP 401 C 1 HETATM 20 O O2' ANP . . . D 3 -49.176 85.952 2.179 1 133.82 ? O2' ANP 401 C 1 HETATM 21 C C1' ANP . . . D 3 -51.215 85.221 3.268 1 131.19 ? C1' ANP 401 C 1 HETATM 22 N N9 ANP . . . D 3 -51.71 85.581 4.592 1 127.76 ? N9 ANP 401 C 1 HETATM 23 C C8 ANP . . . D 3 -52.173 84.73 5.561 1 129.14 ? C8 ANP 401 C 1 HETATM 24 N N7 ANP . . . D 3 -52.57 85.33 6.658 1 129.27 ? N7 ANP 401 C 1 HETATM 25 C C5 ANP . . . D 3 -52.357 86.674 6.389 1 132.46 ? C5 ANP 401 C 1 HETATM 26 C C6 ANP . . . D 3 -52.576 87.839 7.151 1 135.73 ? C6 ANP 401 C 1 HETATM 27 N N6 ANP . . . D 3 -53.075 87.835 8.388 1 134.67 ? N6 ANP 401 C 1 HETATM 28 N N1 ANP . . . D 3 -52.255 89.026 6.586 1 141.36 ? N1 ANP 401 C 1 HETATM 29 C C2 ANP . . . D 3 -51.754 89.036 5.347 1 137.95 ? C2 ANP 401 C 1 HETATM 30 N N3 ANP . . . D 3 -51.506 88.005 4.536 1 128.93 ? N3 ANP 401 C 1 HETATM 31 C C4 ANP . . . D 3 -51.832 86.844 5.12 1 130.89 ? C4 ANP 401 C 1 # _model_server_stats.io_time_ms 9 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 16 _model_server_stats.query_time_ms 276 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 31 #