data_7JUU # _model_server_result.job_id FVYTw4YssKIRFakaJrP4RA _model_server_result.datetime_utc '2025-02-18 04:16:20' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7juu # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":1001}' # _entry.id 7JUU # _exptl.entry_id 7JUU _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 506.196 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'PHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 7JUU _cell.length_a 140 _cell.length_b 140 _cell.length_c 220 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7JUU _symmetry.cell_setting ? _symmetry.Int_Tables_number 178 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 61 2 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 C N N ? 3 E N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OD1 ASN 183 B ASN 791 1_555 D MG MG . B MG 1002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.179 ? metalc ? metalc2 A OD2 ASP 195 B ASP 803 1_555 D MG MG . B MG 1002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.173 ? metalc ? metalc3 C O1B ANP . B ANP 1001 1_555 D MG MG . B MG 1002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.108 ? metalc ? metalc4 C O1A ANP . B ANP 1001 1_555 D MG MG . B MG 1002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.407 ? metalc ? metalc5 D MG MG . B MG 1002 1_555 H O HOH . B HOH 1101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.951 ? metalc ? metalc6 D MG MG . B MG 1002 1_555 H O HOH . B HOH 1103 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.846 ? metalc ? metalc7 B OD2 ASP 199 C ASP 208 1_555 G MG MG . C MG 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.929 ? metalc ? metalc8 E O3G ANP . C ANP 401 1_555 G MG MG . C MG 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3 ? metalc ? metalc9 E O2A ANP . C ANP 401 1_555 G MG MG . C MG 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.782 ? # _chem_comp.formula 'C10 H17 N6 O12 P3' _chem_comp.formula_weight 506.196 _chem_comp.id ANP _chem_comp.mon_nstd_flag . _chem_comp.name 'PHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PG O1G ANP doub 54 n n PG O2G ANP sing 55 n n PG O3G ANP sing 56 n n PG N3B ANP sing 57 n n O2G HOG2 ANP sing 58 n n O3G HOG3 ANP sing 59 n n PB O1B ANP doub 60 n n PB O2B ANP sing 61 n n PB N3B ANP sing 62 n n PB O3A ANP sing 63 n n O2B HOB2 ANP sing 64 n n N3B HNB1 ANP sing 65 n n PA O1A ANP doub 66 n n PA O2A ANP sing 67 n n PA O3A ANP sing 68 n n PA O5' ANP sing 69 n n O2A HOA2 ANP sing 70 n n O5' C5' ANP sing 71 n n C5' C4' ANP sing 72 n n C5' "H5'1" ANP sing 73 n n C5' "H5'2" ANP sing 74 n n C4' O4' ANP sing 75 n n C4' C3' ANP sing 76 n n C4' H4' ANP sing 77 n n O4' C1' ANP sing 78 n n C3' O3' ANP sing 79 n n C3' C2' ANP sing 80 n n C3' H3' ANP sing 81 n n O3' HO3' ANP sing 82 n n C2' O2' ANP sing 83 n n C2' C1' ANP sing 84 n n C2' H2' ANP sing 85 n n O2' HO2' ANP sing 86 n n C1' N9 ANP sing 87 n n C1' H1' ANP sing 88 n n N9 C8 ANP sing 89 n y N9 C4 ANP sing 90 n y C8 N7 ANP doub 91 n y C8 H8 ANP sing 92 n n N7 C5 ANP sing 93 n y C5 C6 ANP sing 94 n y C5 C4 ANP doub 95 n y C6 N6 ANP sing 96 n n C6 N1 ANP doub 97 n y N6 HN61 ANP sing 98 n n N6 HN62 ANP sing 99 n n N1 C2 ANP sing 100 n y C2 N3 ANP doub 101 n y C2 H2 ANP sing 102 n n N3 C4 ANP sing 103 n y # _atom_sites.entry_id 7JUU _atom_sites.fract_transf_matrix[1][1] 0.007143 _atom_sites.fract_transf_matrix[1][2] 0.004124 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.008248 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.004545 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 ANP B 1 1001 1001 ANP ANP . D 4 MG B 1 1002 2 MG MG . E 3 ANP C 1 401 401 ANP ANP . F 5 4BM C 1 402 501 4BM ZPD . G 4 MG C 1 403 1 MG MG . H 6 HOH B 1 1101 2 HOH HOH . H 6 HOH B 2 1102 3 HOH HOH . H 6 HOH B 3 1103 1 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PG ANP . . . C 3 -60.906 59.148 -3.679 1 108.01 ? PG ANP 1001 B 1 HETATM 2 O O1G ANP . . . C 3 -61.4 60.466 -4.175 1 91.73 ? O1G ANP 1001 B 1 HETATM 3 O O2G ANP . . . C 3 -59.613 59.388 -2.81 1 104.75 ? O2G ANP 1001 B 1 HETATM 4 O O3G ANP . . . C 3 -60.557 58.242 -4.923 1 79.79 ? O3G ANP 1001 B 1 HETATM 5 P PB ANP . . . C 3 -63.126 57.459 -3.656 1 90.28 ? PB ANP 1001 B 1 HETATM 6 O O1B ANP . . . C 3 -62.371 56.311 -4.24 1 89.69 ? O1B ANP 1001 B 1 HETATM 7 O O2B ANP . . . C 3 -64.265 56.869 -2.774 1 71.55 ? O2B ANP 1001 B 1 HETATM 8 N N3B ANP . . . C 3 -62.094 58.4 -2.73 1 70.87 ? N3B ANP 1001 B 1 HETATM 9 P PA ANP . . . C 3 -64.424 57.796 -6.091 1 78.8 ? PA ANP 1001 B 1 HETATM 10 O O1A ANP . . . C 3 -63.823 56.504 -6.491 1 79.11 ? O1A ANP 1001 B 1 HETATM 11 O O2A ANP . . . C 3 -64.336 58.903 -7.147 1 87.93 ? O2A ANP 1001 B 1 HETATM 12 O O3A ANP . . . C 3 -63.71 58.375 -4.783 1 98.6 ? O3A ANP 1001 B 1 HETATM 13 O O5' ANP . . . C 3 -65.922 57.514 -5.697 1 67.39 ? O5' ANP 1001 B 1 HETATM 14 C C5' ANP . . . C 3 -66.827 58.594 -5.421 1 77.92 ? C5' ANP 1001 B 1 HETATM 15 C C4' ANP . . . C 3 -68.013 58.051 -4.664 1 80.77 ? C4' ANP 1001 B 1 HETATM 16 O O4' ANP . . . C 3 -68.659 57.026 -5.453 1 75.47 ? O4' ANP 1001 B 1 HETATM 17 C C3' ANP . . . C 3 -67.696 57.414 -3.31 1 81.21 ? C3' ANP 1001 B 1 HETATM 18 O O3' ANP . . . C 3 -68.71 57.723 -2.361 1 83.59 ? O3' ANP 1001 B 1 HETATM 19 C C2' ANP . . . C 3 -67.662 55.92 -3.636 1 78.11 ? C2' ANP 1001 B 1 HETATM 20 O O2' ANP . . . C 3 -67.981 55.112 -2.509 1 77.89 ? O2' ANP 1001 B 1 HETATM 21 C C1' ANP . . . C 3 -68.746 55.829 -4.708 1 77.48 ? C1' ANP 1001 B 1 HETATM 22 N N9 ANP . . . C 3 -68.592 54.703 -5.622 1 73.87 ? N9 ANP 1001 B 1 HETATM 23 C C8 ANP . . . C 3 -67.55 54.473 -6.483 1 77.04 ? C8 ANP 1001 B 1 HETATM 24 N N7 ANP . . . C 3 -67.671 53.374 -7.187 1 81.78 ? N7 ANP 1001 B 1 HETATM 25 C C5 ANP . . . C 3 -68.881 52.841 -6.761 1 75.73 ? C5 ANP 1001 B 1 HETATM 26 C C6 ANP . . . C 3 -69.585 51.677 -7.122 1 79.74 ? C6 ANP 1001 B 1 HETATM 27 N N6 ANP . . . C 3 -69.156 50.802 -8.036 1 83.48 ? N6 ANP 1001 B 1 HETATM 28 N N1 ANP . . . C 3 -70.764 51.439 -6.503 1 72.43 ? N1 ANP 1001 B 1 HETATM 29 C C2 ANP . . . C 3 -71.198 52.312 -5.589 1 73.73 ? C2 ANP 1001 B 1 HETATM 30 N N3 ANP . . . C 3 -70.621 53.44 -5.167 1 77.53 ? N3 ANP 1001 B 1 HETATM 31 C C4 ANP . . . C 3 -69.456 53.651 -5.797 1 69.94 ? C4 ANP 1001 B 1 # _model_server_stats.io_time_ms 88 _model_server_stats.parse_time_ms 39 _model_server_stats.create_model_time_ms 21 _model_server_stats.query_time_ms 1278 _model_server_stats.encode_time_ms 14 _model_server_stats.element_count 31 #