data_7JUU # _model_server_result.job_id Xs2mG99E1ln5U2eWsvXyYw _model_server_result.datetime_utc '2024-11-05 08:34:30' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7juu # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":401}' # _entry.id 7JUU # _exptl.entry_id 7JUU _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 506.196 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'PHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 7JUU _cell.length_a 140 _cell.length_b 140 _cell.length_c 220 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7JUU _symmetry.cell_setting ? _symmetry.Int_Tables_number 178 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 61 2 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 C N N ? 3 E N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OD1 ASN 183 B ASN 791 1_555 D MG MG . B MG 1002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.179 ? metalc ? metalc2 A OD2 ASP 195 B ASP 803 1_555 D MG MG . B MG 1002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.173 ? metalc ? metalc3 C O1B ANP . B ANP 1001 1_555 D MG MG . B MG 1002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.108 ? metalc ? metalc4 C O1A ANP . B ANP 1001 1_555 D MG MG . B MG 1002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.407 ? metalc ? metalc5 D MG MG . B MG 1002 1_555 H O HOH . B HOH 1101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.951 ? metalc ? metalc6 D MG MG . B MG 1002 1_555 H O HOH . B HOH 1103 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.846 ? metalc ? metalc7 B OD2 ASP 199 C ASP 208 1_555 G MG MG . C MG 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.929 ? metalc ? metalc8 E O3G ANP . C ANP 401 1_555 G MG MG . C MG 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3 ? metalc ? metalc9 E O2A ANP . C ANP 401 1_555 G MG MG . C MG 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.782 ? # _chem_comp.formula 'C10 H17 N6 O12 P3' _chem_comp.formula_weight 506.196 _chem_comp.id ANP _chem_comp.mon_nstd_flag . _chem_comp.name 'PHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PG O1G ANP doub 54 n n PG O2G ANP sing 55 n n PG O3G ANP sing 56 n n PG N3B ANP sing 57 n n O2G HOG2 ANP sing 58 n n O3G HOG3 ANP sing 59 n n PB O1B ANP doub 60 n n PB O2B ANP sing 61 n n PB N3B ANP sing 62 n n PB O3A ANP sing 63 n n O2B HOB2 ANP sing 64 n n N3B HNB1 ANP sing 65 n n PA O1A ANP doub 66 n n PA O2A ANP sing 67 n n PA O3A ANP sing 68 n n PA O5' ANP sing 69 n n O2A HOA2 ANP sing 70 n n O5' C5' ANP sing 71 n n C5' C4' ANP sing 72 n n C5' "H5'1" ANP sing 73 n n C5' "H5'2" ANP sing 74 n n C4' O4' ANP sing 75 n n C4' C3' ANP sing 76 n n C4' H4' ANP sing 77 n n O4' C1' ANP sing 78 n n C3' O3' ANP sing 79 n n C3' C2' ANP sing 80 n n C3' H3' ANP sing 81 n n O3' HO3' ANP sing 82 n n C2' O2' ANP sing 83 n n C2' C1' ANP sing 84 n n C2' H2' ANP sing 85 n n O2' HO2' ANP sing 86 n n C1' N9 ANP sing 87 n n C1' H1' ANP sing 88 n n N9 C8 ANP sing 89 n y N9 C4 ANP sing 90 n y C8 N7 ANP doub 91 n y C8 H8 ANP sing 92 n n N7 C5 ANP sing 93 n y C5 C6 ANP sing 94 n y C5 C4 ANP doub 95 n y C6 N6 ANP sing 96 n n C6 N1 ANP doub 97 n y N6 HN61 ANP sing 98 n n N6 HN62 ANP sing 99 n n N1 C2 ANP sing 100 n y C2 N3 ANP doub 101 n y C2 H2 ANP sing 102 n n N3 C4 ANP sing 103 n y # _atom_sites.entry_id 7JUU _atom_sites.fract_transf_matrix[1][1] 0.007143 _atom_sites.fract_transf_matrix[1][2] 0.004124 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.008248 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.004545 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 ANP B 1 1001 1001 ANP ANP . D 4 MG B 1 1002 2 MG MG . E 3 ANP C 1 401 401 ANP ANP . F 5 4BM C 1 402 501 4BM ZPD . G 4 MG C 1 403 1 MG MG . H 6 HOH B 1 1101 2 HOH HOH . H 6 HOH B 2 1102 3 HOH HOH . H 6 HOH B 3 1103 1 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PG ANP . . . E 3 -49.348 77.635 3.301 1 134.38 ? PG ANP 401 C 1 HETATM 2 O O1G ANP . . . E 3 -50.595 77.16 2.625 1 144.17 ? O1G ANP 401 C 1 HETATM 3 O O2G ANP . . . E 3 -48.49 76.383 3.726 1 136.4 ? O2G ANP 401 C 1 HETATM 4 O O3G ANP . . . E 3 -49.722 78.497 4.575 1 135.75 ? O3G ANP 401 C 1 HETATM 5 P PB ANP . . . E 3 -49.118 80.131 2.114 1 140.73 ? PB ANP 401 C 1 HETATM 6 O O1B ANP . . . E 3 -48.621 80.775 0.86 1 145.77 ? O1B ANP 401 C 1 HETATM 7 O O2B ANP . . . E 3 -48.694 80.999 3.332 1 123.99 ? O2B ANP 401 C 1 HETATM 8 N N3B ANP . . . E 3 -48.449 78.595 2.238 1 133.91 ? N3B ANP 401 C 1 HETATM 9 P PA ANP . . . E 3 -51.524 80.94 3.129 1 152.18 ? PA ANP 401 C 1 HETATM 10 O O1A ANP . . . E 3 -52.983 80.779 2.936 1 142.74 ? O1A ANP 401 C 1 HETATM 11 O O2A ANP . . . E 3 -51.062 80.493 4.514 1 142.62 ? O2A ANP 401 C 1 HETATM 12 O O3A ANP . . . E 3 -50.68 80.07 2.083 1 160.3 ? O3A ANP 401 C 1 HETATM 13 O O5' ANP . . . E 3 -51.154 82.449 2.834 1 138.08 ? O5' ANP 401 C 1 HETATM 14 C C5' ANP . . . E 3 -51.669 83.096 1.653 1 139.9 ? C5' ANP 401 C 1 HETATM 15 C C4' ANP . . . E 3 -50.871 84.345 1.38 1 140.68 ? C4' ANP 401 C 1 HETATM 16 O O4' ANP . . . E 3 -51.706 85.502 1.601 1 140.69 ? O4' ANP 401 C 1 HETATM 17 C C3' ANP . . . E 3 -49.643 84.538 2.265 1 139.86 ? C3' ANP 401 C 1 HETATM 18 O O3' ANP . . . E 3 -48.492 83.967 1.653 1 139.79 ? O3' ANP 401 C 1 HETATM 19 C C2' ANP . . . E 3 -49.541 86.061 2.376 1 137.72 ? C2' ANP 401 C 1 HETATM 20 O O2' ANP . . . E 3 -48.857 86.633 1.267 1 145.38 ? O2' ANP 401 C 1 HETATM 21 C C1' ANP . . . E 3 -51.014 86.475 2.361 1 137.46 ? C1' ANP 401 C 1 HETATM 22 N N9 ANP . . . E 3 -51.632 86.548 3.679 1 129.66 ? N9 ANP 401 C 1 HETATM 23 C C8 ANP . . . E 3 -52.104 85.501 4.43 1 131.11 ? C8 ANP 401 C 1 HETATM 24 N N7 ANP . . . E 3 -52.621 85.86 5.579 1 126.22 ? N7 ANP 401 C 1 HETATM 25 C C5 ANP . . . E 3 -52.487 87.241 5.587 1 124.42 ? C5 ANP 401 C 1 HETATM 26 C C6 ANP . . . E 3 -52.841 88.223 6.529 1 125.71 ? C6 ANP 401 C 1 HETATM 27 N N6 ANP . . . E 3 -53.43 87.955 7.697 1 120.7 ? N6 ANP 401 C 1 HETATM 28 N N1 ANP . . . E 3 -52.566 89.513 6.225 1 129.37 ? N1 ANP 401 C 1 HETATM 29 C C2 ANP . . . E 3 -51.976 89.786 5.058 1 127.57 ? C2 ANP 401 C 1 HETATM 30 N N3 ANP . . . E 3 -51.596 88.945 4.093 1 125.43 ? N3 ANP 401 C 1 HETATM 31 C C4 ANP . . . E 3 -51.881 87.676 4.42 1 126.85 ? C4 ANP 401 C 1 # _model_server_stats.io_time_ms 8 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 25 _model_server_stats.query_time_ms 224 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 31 #