data_7JUV # _model_server_result.job_id ku4C384ioNcFrgBq2eFBZw _model_server_result.datetime_utc '2024-11-29 05:00:06' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7juv # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":1001}' # _entry.id 7JUV # _exptl.entry_id 7JUV _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 506.196 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'PHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 7JUV _cell.length_a 139 _cell.length_b 139 _cell.length_c 222 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7JUV _symmetry.cell_setting ? _symmetry.Int_Tables_number 178 _symmetry.space_group_name_Hall 'P 61 2 (x,y,z+5/12)' _symmetry.space_group_name_H-M 'P 61 2 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 C N N ? 3 E N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OD1 ASN 183 B ASN 791 1_555 D MG MG . B MG 1002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.101 ? metalc ? metalc2 A OD1 ASP 195 B ASP 803 1_555 D MG MG . B MG 1002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.108 ? metalc ? metalc3 C O2B ANP . B ANP 1001 1_555 D MG MG . B MG 1002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.193 ? metalc ? metalc4 C O1A ANP . B ANP 1001 1_555 D MG MG . B MG 1002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.065 ? metalc ? metalc5 D MG MG . B MG 1002 1_555 H O HOH . B HOH 1102 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.584 ? metalc ? metalc6 B OD1 ASN 186 C ASN 195 1_555 G MG MG . C MG 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.108 ? metalc ? metalc7 B OD2 ASP 199 C ASP 208 1_555 G MG MG . C MG 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.136 ? metalc ? metalc8 E O3G ANP . C ANP 401 1_555 G MG MG . C MG 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.336 ? metalc ? metalc9 E O1A ANP . C ANP 401 1_555 G MG MG . C MG 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.987 ? # _chem_comp.formula 'C10 H17 N6 O12 P3' _chem_comp.formula_weight 506.196 _chem_comp.id ANP _chem_comp.mon_nstd_flag . _chem_comp.name 'PHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PG O1G ANP doub 13 n n PG O2G ANP sing 14 n n PG O3G ANP sing 15 n n PG N3B ANP sing 16 n n O2G HOG2 ANP sing 17 n n O3G HOG3 ANP sing 18 n n PB O1B ANP doub 19 n n PB O2B ANP sing 20 n n PB N3B ANP sing 21 n n PB O3A ANP sing 22 n n O2B HOB2 ANP sing 23 n n N3B HNB1 ANP sing 24 n n PA O1A ANP doub 25 n n PA O2A ANP sing 26 n n PA O3A ANP sing 27 n n PA O5' ANP sing 28 n n O2A HOA2 ANP sing 29 n n O5' C5' ANP sing 30 n n C5' C4' ANP sing 31 n n C5' "H5'1" ANP sing 32 n n C5' "H5'2" ANP sing 33 n n C4' O4' ANP sing 34 n n C4' C3' ANP sing 35 n n C4' H4' ANP sing 36 n n O4' C1' ANP sing 37 n n C3' O3' ANP sing 38 n n C3' C2' ANP sing 39 n n C3' H3' ANP sing 40 n n O3' HO3' ANP sing 41 n n C2' O2' ANP sing 42 n n C2' C1' ANP sing 43 n n C2' H2' ANP sing 44 n n O2' HO2' ANP sing 45 n n C1' N9 ANP sing 46 n n C1' H1' ANP sing 47 n n N9 C8 ANP sing 48 n y N9 C4 ANP sing 49 n y C8 N7 ANP doub 50 n y C8 H8 ANP sing 51 n n N7 C5 ANP sing 52 n y C5 C6 ANP sing 53 n y C5 C4 ANP doub 54 n y C6 N6 ANP sing 55 n n C6 N1 ANP doub 56 n y N6 HN61 ANP sing 57 n n N6 HN62 ANP sing 58 n n N1 C2 ANP sing 59 n y C2 N3 ANP doub 60 n y C2 H2 ANP sing 61 n n N3 C4 ANP sing 62 n y # _atom_sites.entry_id 7JUV _atom_sites.fract_transf_matrix[1][1] 0.007194 _atom_sites.fract_transf_matrix[1][2] 0.004154 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.008307 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.004505 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 ANP B 1 1001 1001 ANP ANP . D 4 MG B 1 1002 1 MG MG . E 3 ANP C 1 401 401 ANP ANP . F 5 VKG C 1 402 501 VKG 951 . G 4 MG C 1 403 601 MG MG . H 6 HOH B 1 1101 4 HOH HOH . H 6 HOH B 2 1102 12 HOH HOH . H 6 HOH B 3 1103 7 HOH HOH . H 6 HOH B 4 1104 1 HOH HOH . H 6 HOH B 5 1105 6 HOH HOH . H 6 HOH B 6 1106 9 HOH HOH . H 6 HOH B 7 1107 3 HOH HOH . H 6 HOH B 8 1108 2 HOH HOH . H 6 HOH B 9 1109 8 HOH HOH . I 6 HOH C 1 501 10 HOH HOH . I 6 HOH C 2 502 11 HOH HOH . I 6 HOH C 3 503 5 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PG ANP . . . C 3 -60.282 59.072 -3.72 1 88.25 ? PG ANP 1001 B 1 HETATM 2 O O1G ANP . . . C 3 -60.601 59.579 -5.091 1 80.77 ? O1G ANP 1001 B 1 HETATM 3 O O2G ANP . . . C 3 -59.246 57.896 -3.852 1 77.2 ? O2G ANP 1001 B 1 HETATM 4 O O3G ANP . . . C 3 -59.652 60.233 -2.849 1 111.54 ? O3G ANP 1001 B 1 HETATM 5 P PB ANP . . . C 3 -62.514 57.439 -3.944 1 87.25 ? PB ANP 1001 B 1 HETATM 6 O O1B ANP . . . C 3 -63.697 56.893 -3.212 1 62.91 ? O1B ANP 1001 B 1 HETATM 7 O O2B ANP . . . C 3 -61.583 56.252 -4.329 1 80.9 ? O2B ANP 1001 B 1 HETATM 8 N N3B ANP . . . C 3 -61.689 58.516 -2.957 1 82.24 ? N3B ANP 1001 B 1 HETATM 9 P PA ANP . . . C 3 -63.829 57.487 -6.358 1 74.64 ? PA ANP 1001 B 1 HETATM 10 O O1A ANP . . . C 3 -63.195 56.231 -6.817 1 85.12 ? O1A ANP 1001 B 1 HETATM 11 O O2A ANP . . . C 3 -64.016 58.53 -7.464 1 71.02 ? O2A ANP 1001 B 1 HETATM 12 O O3A ANP . . . C 3 -62.969 58.196 -5.231 1 96.8 ? O3A ANP 1001 B 1 HETATM 13 O O5' ANP . . . C 3 -65.207 57.126 -5.671 1 59.95 ? O5' ANP 1001 B 1 HETATM 14 C C5' ANP . . . C 3 -66.214 58.137 -5.484 1 69.06 ? C5' ANP 1001 B 1 HETATM 15 C C4' ANP . . . C 3 -67.384 57.536 -4.746 1 70.27 ? C4' ANP 1001 B 1 HETATM 16 O O4' ANP . . . C 3 -68.052 56.576 -5.596 1 62 ? O4' ANP 1001 B 1 HETATM 17 C C3' ANP . . . C 3 -67.036 56.804 -3.447 1 75.29 ? C3' ANP 1001 B 1 HETATM 18 O O3' ANP . . . C 3 -67.948 57.148 -2.41 1 72.95 ? O3' ANP 1001 B 1 HETATM 19 C C2' ANP . . . C 3 -67.148 55.327 -3.835 1 69.53 ? C2' ANP 1001 B 1 HETATM 20 O O2' ANP . . . C 3 -67.533 54.515 -2.732 1 65.12 ? O2' ANP 1001 B 1 HETATM 21 C C1' ANP . . . C 3 -68.262 55.381 -4.875 1 63.74 ? C1' ANP 1001 B 1 HETATM 22 N N9 ANP . . . C 3 -68.267 54.259 -5.81 1 64.07 ? N9 ANP 1001 B 1 HETATM 23 C C8 ANP . . . C 3 -67.427 54.055 -6.872 1 69.25 ? C8 ANP 1001 B 1 HETATM 24 N N7 ANP . . . C 3 -67.667 52.951 -7.54 1 69.22 ? N7 ANP 1001 B 1 HETATM 25 C C5 ANP . . . C 3 -68.742 52.389 -6.867 1 60.94 ? C5 ANP 1001 B 1 HETATM 26 C C6 ANP . . . C 3 -69.477 51.205 -7.075 1 63.98 ? C6 ANP 1001 B 1 HETATM 27 N N6 ANP . . . C 3 -69.23 50.34 -8.061 1 66.25 ? N6 ANP 1001 B 1 HETATM 28 N N1 ANP . . . C 3 -70.491 50.938 -6.22 1 64.92 ? N1 ANP 1001 B 1 HETATM 29 C C2 ANP . . . C 3 -70.743 51.801 -5.231 1 67.5 ? C2 ANP 1001 B 1 HETATM 30 N N3 ANP . . . C 3 -70.119 52.945 -4.938 1 61.53 ? N3 ANP 1001 B 1 HETATM 31 C C4 ANP . . . C 3 -69.122 53.183 -5.799 1 58.53 ? C4 ANP 1001 B 1 # _model_server_stats.io_time_ms 16 _model_server_stats.parse_time_ms 13 _model_server_stats.create_model_time_ms 6 _model_server_stats.query_time_ms 314 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 31 #