data_7JUV # _model_server_result.job_id s2jUpG1efd7YMlnFL6oafA _model_server_result.datetime_utc '2024-11-25 13:46:31' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7juv # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":402}' # _entry.id 7JUV # _exptl.entry_id 7JUV _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 666.463 _entity.id 5 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description "N-(3-{3-cyclopropyl-5-[(2-fluoro-4-iodophenyl)amino]-6,8-dimethyl-2,4,7-trioxo-3,4,6,7-tetrahydropyrido[4,3-d]pyrimidin-1(2H)-yl}phenyl)-N'-methylsulfuric diamide" _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 7JUV _cell.length_a 139 _cell.length_b 139 _cell.length_c 222 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7JUV _symmetry.cell_setting ? _symmetry.Int_Tables_number 178 _symmetry.space_group_name_Hall 'P 61 2 (x,y,z+5/12)' _symmetry.space_group_name_H-M 'P 61 2 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 5 _struct_asym.id F _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OD1 ASN 183 B ASN 791 1_555 D MG MG . B MG 1002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.101 ? metalc ? metalc2 A OD1 ASP 195 B ASP 803 1_555 D MG MG . B MG 1002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.108 ? metalc ? metalc3 C O2B ANP . B ANP 1001 1_555 D MG MG . B MG 1002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.193 ? metalc ? metalc4 C O1A ANP . B ANP 1001 1_555 D MG MG . B MG 1002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.065 ? metalc ? metalc5 D MG MG . B MG 1002 1_555 H O HOH . B HOH 1102 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.584 ? metalc ? metalc6 B OD1 ASN 186 C ASN 195 1_555 G MG MG . C MG 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.108 ? metalc ? metalc7 B OD2 ASP 199 C ASP 208 1_555 G MG MG . C MG 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.136 ? metalc ? metalc8 E O3G ANP . C ANP 401 1_555 G MG MG . C MG 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.336 ? metalc ? metalc9 E O1A ANP . C ANP 401 1_555 G MG MG . C MG 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.987 ? # _chem_comp.formula 'C25 H24 F I N6 O5 S' _chem_comp.formula_weight 666.463 _chem_comp.id VKG _chem_comp.mon_nstd_flag . _chem_comp.name "N-(3-{3-cyclopropyl-5-[(2-fluoro-4-iodophenyl)amino]-6,8-dimethyl-2,4,7-trioxo-3,4,6,7-tetrahydropyrido[4,3-d]pyrimidin-1(2H)-yl}phenyl)-N'-methylsulfuric diamide" _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C18 C17 VKG sing 426 n n C18 C16 VKG sing 427 n n C17 C16 VKG sing 428 n n C16 N15 VKG sing 429 n n C01 N02 VKG sing 430 n n O14 C13 VKG doub 431 n n N15 C13 VKG sing 432 n n N15 C19 VKG sing 433 n n O20 C19 VKG doub 434 n n F31 C30 VKG sing 435 n n C13 N12 VKG sing 436 n n N02 S03 VKG sing 437 n n C19 C21 VKG sing 438 n n O05 S03 VKG doub 439 n n N12 C11 VKG sing 440 n n N12 C38 VKG sing 441 n n C39 C11 VKG doub 442 n y C39 C07 VKG sing 443 n y S03 N06 VKG sing 444 n n S03 O04 VKG doub 445 n n C30 C29 VKG doub 446 n y C30 C24 VKG sing 447 n y N06 C07 VKG sing 448 n n C11 C10 VKG sing 449 n y C21 C38 VKG sing 450 n n C21 C22 VKG doub 451 n n C07 C08 VKG doub 452 n y C29 C27 VKG sing 453 n y N23 C24 VKG sing 454 n n N23 C22 VKG sing 455 n n C38 C36 VKG doub 456 n n C10 C09 VKG doub 457 n y C24 C25 VKG doub 458 n y C08 C09 VKG sing 459 n y C22 N32 VKG sing 460 n n C27 I28 VKG sing 461 n n C27 C26 VKG doub 462 n y C36 C34 VKG sing 463 n n C36 C37 VKG sing 464 n n C25 C26 VKG sing 465 n y N32 C34 VKG sing 466 n n N32 C33 VKG sing 467 n n C34 O35 VKG doub 468 n n C01 H1 VKG sing 469 n n C01 H2 VKG sing 470 n n C01 H3 VKG sing 471 n n C08 H4 VKG sing 472 n n C09 H5 VKG sing 473 n n C10 H6 VKG sing 474 n n C16 H7 VKG sing 475 n n C17 H8 VKG sing 476 n n C17 H9 VKG sing 477 n n C18 H10 VKG sing 478 n n C18 H11 VKG sing 479 n n C25 H12 VKG sing 480 n n C26 H13 VKG sing 481 n n C29 H14 VKG sing 482 n n C33 H15 VKG sing 483 n n C33 H16 VKG sing 484 n n C33 H17 VKG sing 485 n n C37 H18 VKG sing 486 n n C37 H19 VKG sing 487 n n C37 H20 VKG sing 488 n n C39 H21 VKG sing 489 n n N02 H22 VKG sing 490 n n N06 H23 VKG sing 491 n n N23 H24 VKG sing 492 n n # _atom_sites.entry_id 7JUV _atom_sites.fract_transf_matrix[1][1] 0.007194 _atom_sites.fract_transf_matrix[1][2] 0.004154 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.008307 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.004505 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 ANP B 1 1001 1001 ANP ANP . D 4 MG B 1 1002 1 MG MG . E 3 ANP C 1 401 401 ANP ANP . F 5 VKG C 1 402 501 VKG 951 . G 4 MG C 1 403 601 MG MG . H 6 HOH B 1 1101 4 HOH HOH . H 6 HOH B 2 1102 12 HOH HOH . H 6 HOH B 3 1103 7 HOH HOH . H 6 HOH B 4 1104 1 HOH HOH . H 6 HOH B 5 1105 6 HOH HOH . H 6 HOH B 6 1106 9 HOH HOH . H 6 HOH B 7 1107 3 HOH HOH . H 6 HOH B 8 1108 2 HOH HOH . H 6 HOH B 9 1109 8 HOH HOH . I 6 HOH C 1 501 10 HOH HOH . I 6 HOH C 2 502 11 HOH HOH . I 6 HOH C 3 503 5 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C01 VKG . . . F 5 -47.412 70.296 8.685 1 99.14 ? C01 VKG 402 C 1 HETATM 2 C C07 VKG . . . F 5 -50.262 71.507 10.968 1 108.21 ? C07 VKG 402 C 1 HETATM 3 C C08 VKG . . . F 5 -49.141 71.868 11.725 1 98.7 ? C08 VKG 402 C 1 HETATM 4 C C09 VKG . . . F 5 -48.978 73.18 12.162 1 108.49 ? C09 VKG 402 C 1 HETATM 5 C C10 VKG . . . F 5 -49.947 74.126 11.826 1 113.7 ? C10 VKG 402 C 1 HETATM 6 C C11 VKG . . . F 5 -51.081 73.774 11.077 1 109.82 ? C11 VKG 402 C 1 HETATM 7 C C13 VKG . . . F 5 -51.735 75.443 9.674 1 120.67 ? C13 VKG 402 C 1 HETATM 8 C C16 VKG . . . F 5 -52.247 77.166 8.037 1 126.95 ? C16 VKG 402 C 1 HETATM 9 C C17 VKG . . . F 5 -53.314 76.578 7.101 1 108.42 ? C17 VKG 402 C 1 HETATM 10 C C18 VKG . . . F 5 -51.914 76.861 6.567 1 132.99 ? C18 VKG 402 C 1 HETATM 11 C C19 VKG . . . F 5 -53.449 76.96 10.152 1 121.1 ? C19 VKG 402 C 1 HETATM 12 C C21 VKG . . . F 5 -53.695 76.319 11.412 1 117.44 ? C21 VKG 402 C 1 HETATM 13 C C22 VKG . . . F 5 -54.734 76.843 12.259 1 113.04 ? C22 VKG 402 C 1 HETATM 14 C C24 VKG . . . F 5 -55.182 79.4 12.267 1 126.54 ? C24 VKG 402 C 1 HETATM 15 C C25 VKG . . . F 5 -55.123 79.621 13.639 1 135.18 ? C25 VKG 402 C 1 HETATM 16 C C26 VKG . . . F 5 -54.839 80.866 14.154 1 147.33 ? C26 VKG 402 C 1 HETATM 17 C C27 VKG . . . F 5 -54.611 81.933 13.31 1 151.57 ? C27 VKG 402 C 1 HETATM 18 C C29 VKG . . . F 5 -54.664 81.75 11.926 1 134.02 ? C29 VKG 402 C 1 HETATM 19 C C30 VKG . . . F 5 -54.953 80.479 11.404 1 124.69 ? C30 VKG 402 C 1 HETATM 20 C C33 VKG . . . F 5 -56.022 76.693 14.377 1 115.99 ? C33 VKG 402 C 1 HETATM 21 C C34 VKG . . . F 5 -54.267 75.182 13.855 1 120.11 ? C34 VKG 402 C 1 HETATM 22 C C36 VKG . . . F 5 -53.241 74.635 13.069 1 116.79 ? C36 VKG 402 C 1 HETATM 23 C C37 VKG . . . F 5 -52.568 73.415 13.72 1 120.89 ? C37 VKG 402 C 1 HETATM 24 C C38 VKG . . . F 5 -52.925 75.232 11.762 1 115.34 ? C38 VKG 402 C 1 HETATM 25 C C39 VKG . . . F 5 -51.249 72.453 10.633 1 109.32 ? C39 VKG 402 C 1 HETATM 26 F F31 VKG . . . F 5 -55.003 80.309 10.048 1 126.86 ? F31 VKG 402 C 1 HETATM 27 I I28 VKG . . . F 5 -54.194 83.779 14.238 1 226.23 ? I28 VKG 402 C 1 HETATM 28 N N02 VKG . . . F 5 -47.556 69.902 10.09 1 85.9 ? N02 VKG 402 C 1 HETATM 29 N N06 VKG . . . F 5 -50.374 70.108 10.536 1 122.23 ? N06 VKG 402 C 1 HETATM 30 N N12 VKG . . . F 5 -51.94 74.795 10.838 1 115.33 ? N12 VKG 402 C 1 HETATM 31 N N15 VKG . . . F 5 -52.486 76.507 9.338 1 123.53 ? N15 VKG 402 C 1 HETATM 32 N N23 VKG . . . F 5 -55.503 78.026 11.786 1 122.92 ? N23 VKG 402 C 1 HETATM 33 N N32 VKG . . . F 5 -54.976 76.245 13.448 1 112.55 ? N32 VKG 402 C 1 HETATM 34 O O04 VKG . . . F 5 -48.801 68.571 11.992 1 108.99 ? O04 VKG 402 C 1 HETATM 35 O O05 VKG . . . F 5 -49.194 67.848 9.883 1 133.33 ? O05 VKG 402 C 1 HETATM 36 O O14 VKG . . . F 5 -50.887 75.059 8.933 1 120.03 ? O14 VKG 402 C 1 HETATM 37 O O20 VKG . . . F 5 -54.107 77.9 9.841 1 119.48 ? O20 VKG 402 C 1 HETATM 38 O O35 VKG . . . F 5 -54.514 74.69 14.912 1 127.25 ? O35 VKG 402 C 1 HETATM 39 S S03 VKG . . . F 5 -48.98 69.091 10.631 1 125.26 ? S03 VKG 402 C 1 # _model_server_stats.io_time_ms 70 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 6 _model_server_stats.query_time_ms 280 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 39 #