data_7JUW # _model_server_result.job_id EbWaRBNPsIT6tz97Wotthw _model_server_result.datetime_utc '2024-11-05 09:31:33' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7juw # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":401}' # _entry.id 7JUW # _exptl.entry_id 7JUW _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 506.196 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'PHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 7JUW _cell.length_a 137.71 _cell.length_b 137.71 _cell.length_c 218.91 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7JUW _symmetry.cell_setting ? _symmetry.Int_Tables_number 178 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 61 2 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details trimeric _pdbx_struct_assembly.oligomeric_count 3 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 C N N ? 3 E N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 C O2G ANP . B ANP 901 1_555 D MG MG . B MG 902 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.417 ? metalc ? metalc2 C O1B ANP . B ANP 901 1_555 D MG MG . B MG 902 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.513 ? metalc ? metalc3 C O1A ANP . B ANP 901 1_555 D MG MG . B MG 902 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.278 ? metalc ? metalc4 B OD2 ASP 199 C ASP 208 1_555 F MG MG . C MG 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.682 ? metalc ? metalc5 E O3G ANP . C ANP 401 1_555 F MG MG . C MG 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.786 ? metalc ? metalc6 E O1A ANP . C ANP 401 1_555 F MG MG . C MG 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.131 ? # _chem_comp.formula 'C10 H17 N6 O12 P3' _chem_comp.formula_weight 506.196 _chem_comp.id ANP _chem_comp.mon_nstd_flag . _chem_comp.name 'PHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PG O1G ANP doub 13 n n PG O2G ANP sing 14 n n PG O3G ANP sing 15 n n PG N3B ANP sing 16 n n O2G HOG2 ANP sing 17 n n O3G HOG3 ANP sing 18 n n PB O1B ANP doub 19 n n PB O2B ANP sing 20 n n PB N3B ANP sing 21 n n PB O3A ANP sing 22 n n O2B HOB2 ANP sing 23 n n N3B HNB1 ANP sing 24 n n PA O1A ANP doub 25 n n PA O2A ANP sing 26 n n PA O3A ANP sing 27 n n PA O5' ANP sing 28 n n O2A HOA2 ANP sing 29 n n O5' C5' ANP sing 30 n n C5' C4' ANP sing 31 n n C5' "H5'1" ANP sing 32 n n C5' "H5'2" ANP sing 33 n n C4' O4' ANP sing 34 n n C4' C3' ANP sing 35 n n C4' H4' ANP sing 36 n n O4' C1' ANP sing 37 n n C3' O3' ANP sing 38 n n C3' C2' ANP sing 39 n n C3' H3' ANP sing 40 n n O3' HO3' ANP sing 41 n n C2' O2' ANP sing 42 n n C2' C1' ANP sing 43 n n C2' H2' ANP sing 44 n n O2' HO2' ANP sing 45 n n C1' N9 ANP sing 46 n n C1' H1' ANP sing 47 n n N9 C8 ANP sing 48 n y N9 C4 ANP sing 49 n y C8 N7 ANP doub 50 n y C8 H8 ANP sing 51 n n N7 C5 ANP sing 52 n y C5 C6 ANP sing 53 n y C5 C4 ANP doub 54 n y C6 N6 ANP sing 55 n n C6 N1 ANP doub 56 n y N6 HN61 ANP sing 57 n n N6 HN62 ANP sing 58 n n N1 C2 ANP sing 59 n y C2 N3 ANP doub 60 n y C2 H2 ANP sing 61 n n N3 C4 ANP sing 62 n y # _atom_sites.entry_id 7JUW _atom_sites.fract_transf_matrix[1][1] 0.007262 _atom_sites.fract_transf_matrix[1][2] 0.004193 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.008385 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.004568 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 ANP B 1 901 901 ANP ANP . D 4 MG B 1 902 1 MG MG . E 3 ANP C 1 401 401 ANP ANP . F 4 MG C 1 402 2 MG MG . G 5 HOH B 1 1001 5 HOH HOH . G 5 HOH B 2 1002 8 HOH HOH . G 5 HOH B 3 1003 2 HOH HOH . G 5 HOH B 4 1004 6 HOH HOH . G 5 HOH B 5 1005 9 HOH HOH . G 5 HOH B 6 1006 1 HOH HOH . H 5 HOH C 1 501 10 HOH HOH . H 5 HOH C 2 502 7 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PG ANP . . . E 3 -21.915 39.723 1.401 1 105.08 ? PG ANP 401 C 1 HETATM 2 O O1G ANP . . . E 3 -20.469 39.883 1.045 1 114.36 ? O1G ANP 401 C 1 HETATM 3 O O2G ANP . . . E 3 -22.366 40.881 2.374 1 111.8 ? O2G ANP 401 C 1 HETATM 4 O O3G ANP . . . E 3 -22.133 38.341 2.141 1 103.79 ? O3G ANP 401 C 1 HETATM 5 P PB ANP . . . E 3 -23.045 38.272 -0.685 1 115.4 ? PB ANP 401 C 1 HETATM 6 O O1B ANP . . . E 3 -23.522 37.302 0.347 1 111.27 ? O1B ANP 401 C 1 HETATM 7 O O2B ANP . . . E 3 -24.125 38.344 -1.8 1 104.44 ? O2B ANP 401 C 1 HETATM 8 N N3B ANP . . . E 3 -22.851 39.794 -0.007 1 111.3 ? N3B ANP 401 C 1 HETATM 9 P PA ANP . . . E 3 -20.74 36.776 -0.603 1 118.79 ? PA ANP 401 C 1 HETATM 10 O O1A ANP . . . E 3 -21.07 36.597 0.825 1 121.07 ? O1A ANP 401 C 1 HETATM 11 O O2A ANP . . . E 3 -19.303 37.238 -0.87 1 116.29 ? O2A ANP 401 C 1 HETATM 12 O O3A ANP . . . E 3 -21.682 37.838 -1.309 1 121.83 ? O3A ANP 401 C 1 HETATM 13 O O5' ANP . . . E 3 -21.058 35.405 -1.313 1 119.03 ? O5' ANP 401 C 1 HETATM 14 C C5' ANP . . . E 3 -21.66 35.372 -2.615 1 124.37 ? C5' ANP 401 C 1 HETATM 15 C C4' ANP . . . E 3 -21.914 33.93 -2.969 1 127.68 ? C4' ANP 401 C 1 HETATM 16 O O4' ANP . . . E 3 -20.943 33.094 -2.305 1 124.4 ? O4' ANP 401 C 1 HETATM 17 C C3' ANP . . . E 3 -23.3 33.4 -2.589 1 123.33 ? C3' ANP 401 C 1 HETATM 18 O O3' ANP . . . E 3 -23.954 32.844 -3.725 1 122.69 ? O3' ANP 401 C 1 HETATM 19 C C2' ANP . . . E 3 -23.017 32.356 -1.499 1 121.67 ? C2' ANP 401 C 1 HETATM 20 O O2' ANP . . . E 3 -23.879 31.232 -1.633 1 128.21 ? O2' ANP 401 C 1 HETATM 21 C C1' ANP . . . E 3 -21.58 31.941 -1.805 1 119.4 ? C1' ANP 401 C 1 HETATM 22 N N9 ANP . . . E 3 -20.839 31.469 -0.648 1 116.1 ? N9 ANP 401 C 1 HETATM 23 C C8 ANP . . . E 3 -20.224 32.23 0.32 1 114.88 ? C8 ANP 401 C 1 HETATM 24 N N7 ANP . . . E 3 -19.625 31.535 1.25 1 112.49 ? N7 ANP 401 C 1 HETATM 25 C C5 ANP . . . E 3 -19.855 30.214 0.88 1 114.44 ? C5 ANP 401 C 1 HETATM 26 C C6 ANP . . . E 3 -19.479 28.99 1.455 1 116.53 ? C6 ANP 401 C 1 HETATM 27 N N6 ANP . . . E 3 -18.762 28.883 2.576 1 118.53 ? N6 ANP 401 C 1 HETATM 28 N N1 ANP . . . E 3 -19.874 27.859 0.831 1 117.4 ? N1 ANP 401 C 1 HETATM 29 C C2 ANP . . . E 3 -20.593 27.959 -0.291 1 118.76 ? C2 ANP 401 C 1 HETATM 30 N N3 ANP . . . E 3 -21.005 29.058 -0.927 1 119.08 ? N3 ANP 401 C 1 HETATM 31 C C4 ANP . . . E 3 -20.598 30.169 -0.282 1 119.67 ? C4 ANP 401 C 1 # _model_server_stats.io_time_ms 8 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 5 _model_server_stats.query_time_ms 227 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 31 #