data_7JUW # _model_server_result.job_id w94Dv7Ogf1Mv5NtdORJezA _model_server_result.datetime_utc '2024-11-05 09:31:15' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7juw # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":901}' # _entry.id 7JUW # _exptl.entry_id 7JUW _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 506.196 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'PHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 7JUW _cell.length_a 137.71 _cell.length_b 137.71 _cell.length_c 218.91 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7JUW _symmetry.cell_setting ? _symmetry.Int_Tables_number 178 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 61 2 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details trimeric _pdbx_struct_assembly.oligomeric_count 3 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 C N N ? 3 E N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 C O2G ANP . B ANP 901 1_555 D MG MG . B MG 902 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.417 ? metalc ? metalc2 C O1B ANP . B ANP 901 1_555 D MG MG . B MG 902 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.513 ? metalc ? metalc3 C O1A ANP . B ANP 901 1_555 D MG MG . B MG 902 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.278 ? metalc ? metalc4 B OD2 ASP 199 C ASP 208 1_555 F MG MG . C MG 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.682 ? metalc ? metalc5 E O3G ANP . C ANP 401 1_555 F MG MG . C MG 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.786 ? metalc ? metalc6 E O1A ANP . C ANP 401 1_555 F MG MG . C MG 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.131 ? # _chem_comp.formula 'C10 H17 N6 O12 P3' _chem_comp.formula_weight 506.196 _chem_comp.id ANP _chem_comp.mon_nstd_flag . _chem_comp.name 'PHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PG O1G ANP doub 13 n n PG O2G ANP sing 14 n n PG O3G ANP sing 15 n n PG N3B ANP sing 16 n n O2G HOG2 ANP sing 17 n n O3G HOG3 ANP sing 18 n n PB O1B ANP doub 19 n n PB O2B ANP sing 20 n n PB N3B ANP sing 21 n n PB O3A ANP sing 22 n n O2B HOB2 ANP sing 23 n n N3B HNB1 ANP sing 24 n n PA O1A ANP doub 25 n n PA O2A ANP sing 26 n n PA O3A ANP sing 27 n n PA O5' ANP sing 28 n n O2A HOA2 ANP sing 29 n n O5' C5' ANP sing 30 n n C5' C4' ANP sing 31 n n C5' "H5'1" ANP sing 32 n n C5' "H5'2" ANP sing 33 n n C4' O4' ANP sing 34 n n C4' C3' ANP sing 35 n n C4' H4' ANP sing 36 n n O4' C1' ANP sing 37 n n C3' O3' ANP sing 38 n n C3' C2' ANP sing 39 n n C3' H3' ANP sing 40 n n O3' HO3' ANP sing 41 n n C2' O2' ANP sing 42 n n C2' C1' ANP sing 43 n n C2' H2' ANP sing 44 n n O2' HO2' ANP sing 45 n n C1' N9 ANP sing 46 n n C1' H1' ANP sing 47 n n N9 C8 ANP sing 48 n y N9 C4 ANP sing 49 n y C8 N7 ANP doub 50 n y C8 H8 ANP sing 51 n n N7 C5 ANP sing 52 n y C5 C6 ANP sing 53 n y C5 C4 ANP doub 54 n y C6 N6 ANP sing 55 n n C6 N1 ANP doub 56 n y N6 HN61 ANP sing 57 n n N6 HN62 ANP sing 58 n n N1 C2 ANP sing 59 n y C2 N3 ANP doub 60 n y C2 H2 ANP sing 61 n n N3 C4 ANP sing 62 n y # _atom_sites.entry_id 7JUW _atom_sites.fract_transf_matrix[1][1] 0.007262 _atom_sites.fract_transf_matrix[1][2] 0.004193 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.008385 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.004568 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 ANP B 1 901 901 ANP ANP . D 4 MG B 1 902 1 MG MG . E 3 ANP C 1 401 401 ANP ANP . F 4 MG C 1 402 2 MG MG . G 5 HOH B 1 1001 5 HOH HOH . G 5 HOH B 2 1002 8 HOH HOH . G 5 HOH B 3 1003 2 HOH HOH . G 5 HOH B 4 1004 6 HOH HOH . G 5 HOH B 5 1005 9 HOH HOH . G 5 HOH B 6 1006 1 HOH HOH . H 5 HOH C 1 501 10 HOH HOH . H 5 HOH C 2 502 7 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PG ANP . . . C 3 -11.26 60.548 -7.012 1 123.71 ? PG ANP 901 B 1 HETATM 2 O O1G ANP . . . C 3 -12.453 59.656 -7.146 1 103.39 ? O1G ANP 901 B 1 HETATM 3 O O2G ANP . . . C 3 -11.611 61.983 -7.572 1 103.87 ? O2G ANP 901 B 1 HETATM 4 O O3G ANP . . . C 3 -10.072 59.934 -7.859 1 112.9 ? O3G ANP 901 B 1 HETATM 5 P PB ANP . . . C 3 -9.342 61.445 -5.258 1 113.37 ? PB ANP 901 B 1 HETATM 6 O O1B ANP . . . C 3 -9.544 62.931 -5.345 1 98.5 ? O1B ANP 901 B 1 HETATM 7 O O2B ANP . . . C 3 -8.672 61.064 -3.906 1 113.46 ? O2B ANP 901 B 1 HETATM 8 N N3B ANP . . . C 3 -10.825 60.673 -5.377 1 111.16 ? N3B ANP 901 B 1 HETATM 9 P PA ANP . . . C 3 -7.852 61.845 -7.603 1 107.67 ? PA ANP 901 B 1 HETATM 10 O O1A ANP . . . C 3 -8.777 62.919 -8.054 1 93.64 ? O1A ANP 901 B 1 HETATM 11 O O2A ANP . . . C 3 -7.54 60.845 -8.721 1 85.64 ? O2A ANP 901 B 1 HETATM 12 O O3A ANP . . . C 3 -8.431 60.93 -6.419 1 112.87 ? O3A ANP 901 B 1 HETATM 13 O O5' ANP . . . C 3 -6.523 62.457 -7.024 1 82.29 ? O5' ANP 901 B 1 HETATM 14 C C5' ANP . . . C 3 -5.519 61.508 -6.629 1 85.39 ? C5' ANP 901 B 1 HETATM 15 C C4' ANP . . . C 3 -4.313 62.234 -6.094 1 88.79 ? C4' ANP 901 B 1 HETATM 16 O O4' ANP . . . C 3 -3.897 63.257 -7.027 1 86.93 ? O4' ANP 901 B 1 HETATM 17 C C3' ANP . . . C 3 -4.487 62.92 -4.735 1 89.91 ? C3' ANP 901 B 1 HETATM 18 O O3' ANP . . . C 3 -3.414 62.554 -3.873 1 78.92 ? O3' ANP 901 B 1 HETATM 19 C C2' ANP . . . C 3 -4.448 64.411 -5.086 1 88.42 ? C2' ANP 901 B 1 HETATM 20 O O2' ANP . . . C 3 -3.903 65.18 -4.022 1 96.2 ? O2' ANP 901 B 1 HETATM 21 C C1' ANP . . . C 3 -3.508 64.389 -6.283 1 84.32 ? C1' ANP 901 B 1 HETATM 22 N N9 ANP . . . C 3 -3.551 65.578 -7.144 1 73.86 ? N9 ANP 901 B 1 HETATM 23 C C8 ANP . . . C 3 -4.434 65.85 -8.147 1 81.77 ? C8 ANP 901 B 1 HETATM 24 N N7 ANP . . . C 3 -4.218 67 -8.753 1 77.14 ? N7 ANP 901 B 1 HETATM 25 C C5 ANP . . . C 3 -3.111 67.502 -8.091 1 71.38 ? C5 ANP 901 B 1 HETATM 26 C C6 ANP . . . C 3 -2.375 68.702 -8.252 1 74.02 ? C6 ANP 901 B 1 HETATM 27 N N6 ANP . . . C 3 -2.662 69.631 -9.165 1 77.44 ? N6 ANP 901 B 1 HETATM 28 N N1 ANP . . . C 3 -1.324 68.906 -7.426 1 70.92 ? N1 ANP 901 B 1 HETATM 29 C C2 ANP . . . C 3 -1.031 67.975 -6.514 1 73.49 ? C2 ANP 901 B 1 HETATM 30 N N3 ANP . . . C 3 -1.649 66.817 -6.271 1 79.25 ? N3 ANP 901 B 1 HETATM 31 C C4 ANP . . . C 3 -2.679 66.642 -7.096 1 71.17 ? C4 ANP 901 B 1 # _model_server_stats.io_time_ms 19 _model_server_stats.parse_time_ms 13 _model_server_stats.create_model_time_ms 9 _model_server_stats.query_time_ms 322 _model_server_stats.encode_time_ms 11 _model_server_stats.element_count 31 #