data_7JUZ # _model_server_result.job_id HKlFk5UdExdkBGOuPMIIqg _model_server_result.datetime_utc '2024-11-25 13:42:34' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7juz # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":901}' # _entry.id 7JUZ # _exptl.entry_id 7JUZ _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 506.196 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'PHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 7JUZ _cell.length_a 136.4 _cell.length_b 136.4 _cell.length_c 216.6 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7JUZ _symmetry.cell_setting ? _symmetry.Int_Tables_number 178 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 61 2 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details trimeric _pdbx_struct_assembly.oligomeric_count 3 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 C N N ? 3 D N N # _chem_comp.formula 'C10 H17 N6 O12 P3' _chem_comp.formula_weight 506.196 _chem_comp.id ANP _chem_comp.mon_nstd_flag . _chem_comp.name 'PHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PG O1G ANP doub 57 n n PG O2G ANP sing 58 n n PG O3G ANP sing 59 n n PG N3B ANP sing 60 n n O2G HOG2 ANP sing 61 n n O3G HOG3 ANP sing 62 n n PB O1B ANP doub 63 n n PB O2B ANP sing 64 n n PB N3B ANP sing 65 n n PB O3A ANP sing 66 n n O2B HOB2 ANP sing 67 n n N3B HNB1 ANP sing 68 n n PA O1A ANP doub 69 n n PA O2A ANP sing 70 n n PA O3A ANP sing 71 n n PA O5' ANP sing 72 n n O2A HOA2 ANP sing 73 n n O5' C5' ANP sing 74 n n C5' C4' ANP sing 75 n n C5' "H5'1" ANP sing 76 n n C5' "H5'2" ANP sing 77 n n C4' O4' ANP sing 78 n n C4' C3' ANP sing 79 n n C4' H4' ANP sing 80 n n O4' C1' ANP sing 81 n n C3' O3' ANP sing 82 n n C3' C2' ANP sing 83 n n C3' H3' ANP sing 84 n n O3' HO3' ANP sing 85 n n C2' O2' ANP sing 86 n n C2' C1' ANP sing 87 n n C2' H2' ANP sing 88 n n O2' HO2' ANP sing 89 n n C1' N9 ANP sing 90 n n C1' H1' ANP sing 91 n n N9 C8 ANP sing 92 n y N9 C4 ANP sing 93 n y C8 N7 ANP doub 94 n y C8 H8 ANP sing 95 n n N7 C5 ANP sing 96 n y C5 C6 ANP sing 97 n y C5 C4 ANP doub 98 n y C6 N6 ANP sing 99 n n C6 N1 ANP doub 100 n y N6 HN61 ANP sing 101 n n N6 HN62 ANP sing 102 n n N1 C2 ANP sing 103 n y C2 N3 ANP doub 104 n y C2 H2 ANP sing 105 n n N3 C4 ANP sing 106 n y # _atom_sites.entry_id 7JUZ _atom_sites.fract_transf_matrix[1][1] 0.007331 _atom_sites.fract_transf_matrix[1][2] 0.004233 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.008466 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.004617 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 ANP A 1 901 901 ANP ANP . D 3 ANP C 1 401 401 ANP ANP . E 4 3EW C 1 402 501 3EW ZSL . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PG ANP . . . C 3 -9.55 60.375 -4.648 1 113.48 ? PG ANP 901 A 1 HETATM 2 O O1G ANP . . . C 3 -10.86 59.947 -4.071 1 126.1 ? O1G ANP 901 A 1 HETATM 3 O O2G ANP . . . C 3 -9.793 61.419 -5.806 1 113.36 ? O2G ANP 901 A 1 HETATM 4 O O3G ANP . . . C 3 -8.781 59.119 -5.231 1 119.52 ? O3G ANP 901 A 1 HETATM 5 P PB ANP . . . C 3 -7.365 61.874 -4.13 1 109.41 ? PB ANP 901 A 1 HETATM 6 O O1B ANP . . . C 3 -7.811 63.236 -4.547 1 107.19 ? O1B ANP 901 A 1 HETATM 7 O O2B ANP . . . C 3 -6.185 61.991 -3.122 1 94.58 ? O2B ANP 901 A 1 HETATM 8 N N3B ANP . . . C 3 -8.642 61.078 -3.412 1 93.64 ? N3B ANP 901 A 1 HETATM 9 P PA ANP . . . C 3 -6.248 61.678 -6.656 1 105.93 ? PA ANP 901 A 1 HETATM 10 O O1A ANP . . . C 3 -6.868 62.984 -6.986 1 102.27 ? O1A ANP 901 A 1 HETATM 11 O O2A ANP . . . C 3 -6.276 60.592 -7.737 1 87.27 ? O2A ANP 901 A 1 HETATM 12 O O3A ANP . . . C 3 -6.951 61.034 -5.382 1 119.36 ? O3A ANP 901 A 1 HETATM 13 O O5' ANP . . . C 3 -4.769 61.947 -6.217 1 84.16 ? O5' ANP 901 A 1 HETATM 14 C C5' ANP . . . C 3 -3.979 60.82 -5.817 1 99.68 ? C5' ANP 901 A 1 HETATM 15 C C4' ANP . . . C 3 -2.758 61.31 -5.085 1 97.4 ? C4' ANP 901 A 1 HETATM 16 O O4' ANP . . . C 3 -2.092 62.315 -5.88 1 104.35 ? O4' ANP 901 A 1 HETATM 17 C C3' ANP . . . C 3 -3.015 61.95 -3.724 1 93.07 ? C3' ANP 901 A 1 HETATM 18 O O3' ANP . . . C 3 -1.94 61.649 -2.843 1 106.66 ? O3' ANP 901 A 1 HETATM 19 C C2' ANP . . . C 3 -3.059 63.441 -4.054 1 91.66 ? C2' ANP 901 A 1 HETATM 20 O O2' ANP . . . C 3 -2.667 64.239 -2.943 1 99.23 ? O2' ANP 901 A 1 HETATM 21 C C1' ANP . . . C 3 -2.007 63.527 -5.157 1 98.23 ? C1' ANP 901 A 1 HETATM 22 N N9 ANP . . . C 3 -2.201 64.637 -6.085 1 96.76 ? N9 ANP 901 A 1 HETATM 23 C C8 ANP . . . C 3 -3.227 64.807 -6.979 1 97.1 ? C8 ANP 901 A 1 HETATM 24 N N7 ANP . . . C 3 -3.139 65.906 -7.688 1 97.44 ? N7 ANP 901 A 1 HETATM 25 C C5 ANP . . . C 3 -1.974 66.504 -7.23 1 98.79 ? C5 ANP 901 A 1 HETATM 26 C C6 ANP . . . C 3 -1.319 67.701 -7.579 1 103.91 ? C6 ANP 901 A 1 HETATM 27 N N6 ANP . . . C 3 -1.765 68.546 -8.513 1 97.09 ? N6 ANP 901 A 1 HETATM 28 N N1 ANP . . . C 3 -0.171 68.004 -6.924 1 95.95 ? N1 ANP 901 A 1 HETATM 29 C C2 ANP . . . C 3 0.279 67.16 -5.991 1 94.59 ? C2 ANP 901 A 1 HETATM 30 N N3 ANP . . . C 3 -0.253 66.005 -5.579 1 95.49 ? N3 ANP 901 A 1 HETATM 31 C C4 ANP . . . C 3 -1.386 65.731 -6.241 1 91.66 ? C4 ANP 901 A 1 # _model_server_stats.io_time_ms 58 _model_server_stats.parse_time_ms 15 _model_server_stats.create_model_time_ms 5 _model_server_stats.query_time_ms 296 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 31 #