data_7JV0 # _model_server_result.job_id qabAfkIKOJAo8O-lA-4tLA _model_server_result.datetime_utc '2024-11-25 13:19:04' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7jv0 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":401}' # _entry.id 7JV0 # _exptl.entry_id 7JV0 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 506.196 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'PHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 7JV0 _cell.length_a 137.66 _cell.length_b 137.66 _cell.length_c 220.89 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7JV0 _symmetry.cell_setting ? _symmetry.Int_Tables_number 178 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 61 2 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details trimeric _pdbx_struct_assembly.oligomeric_count 3 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 C N N ? 3 E N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OD2 ASP 168 A ASP 733 1_555 D MG MG . A MG 902 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.863 ? metalc ? metalc2 C O2G ANP . A ANP 901 1_555 D MG MG . A MG 902 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.129 ? # _chem_comp.formula 'C10 H17 N6 O12 P3' _chem_comp.formula_weight 506.196 _chem_comp.id ANP _chem_comp.mon_nstd_flag . _chem_comp.name 'PHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PG O1G ANP doub 54 n n PG O2G ANP sing 55 n n PG O3G ANP sing 56 n n PG N3B ANP sing 57 n n O2G HOG2 ANP sing 58 n n O3G HOG3 ANP sing 59 n n PB O1B ANP doub 60 n n PB O2B ANP sing 61 n n PB N3B ANP sing 62 n n PB O3A ANP sing 63 n n O2B HOB2 ANP sing 64 n n N3B HNB1 ANP sing 65 n n PA O1A ANP doub 66 n n PA O2A ANP sing 67 n n PA O3A ANP sing 68 n n PA O5' ANP sing 69 n n O2A HOA2 ANP sing 70 n n O5' C5' ANP sing 71 n n C5' C4' ANP sing 72 n n C5' "H5'1" ANP sing 73 n n C5' "H5'2" ANP sing 74 n n C4' O4' ANP sing 75 n n C4' C3' ANP sing 76 n n C4' H4' ANP sing 77 n n O4' C1' ANP sing 78 n n C3' O3' ANP sing 79 n n C3' C2' ANP sing 80 n n C3' H3' ANP sing 81 n n O3' HO3' ANP sing 82 n n C2' O2' ANP sing 83 n n C2' C1' ANP sing 84 n n C2' H2' ANP sing 85 n n O2' HO2' ANP sing 86 n n C1' N9 ANP sing 87 n n C1' H1' ANP sing 88 n n N9 C8 ANP sing 89 n y N9 C4 ANP sing 90 n y C8 N7 ANP doub 91 n y C8 H8 ANP sing 92 n n N7 C5 ANP sing 93 n y C5 C6 ANP sing 94 n y C5 C4 ANP doub 95 n y C6 N6 ANP sing 96 n n C6 N1 ANP doub 97 n y N6 HN61 ANP sing 98 n n N6 HN62 ANP sing 99 n n N1 C2 ANP sing 100 n y C2 N3 ANP doub 101 n y C2 H2 ANP sing 102 n n N3 C4 ANP sing 103 n y # _atom_sites.entry_id 7JV0 _atom_sites.fract_transf_matrix[1][1] 0.007264 _atom_sites.fract_transf_matrix[1][2] 0.004194 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.008388 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.004527 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 ANP A 1 901 901 ANP ANP . D 4 MG A 1 902 1001 MG MG . E 3 ANP C 1 401 401 ANP ANP . F 5 4BM C 1 402 501 4BM ZPD . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PG ANP . . . E 3 -21.694 40.903 0.728 1 203.94 ? PG ANP 401 C 1 HETATM 2 O O1G ANP . . . E 3 -20.224 40.665 0.616 1 205.97 ? O1G ANP 401 C 1 HETATM 3 O O2G ANP . . . E 3 -21.959 42.435 1.005 1 190.17 ? O2G ANP 401 C 1 HETATM 4 O O3G ANP . . . E 3 -22.263 40.018 1.911 1 192.55 ? O3G ANP 401 C 1 HETATM 5 P PB ANP . . . E 3 -22.263 38.791 -0.948 1 206.01 ? PB ANP 401 C 1 HETATM 6 O O1B ANP . . . E 3 -22.935 38.076 0.177 1 197.69 ? O1B ANP 401 C 1 HETATM 7 O O2B ANP . . . E 3 -22.953 38.382 -2.282 1 192.11 ? O2B ANP 401 C 1 HETATM 8 N N3B ANP . . . E 3 -22.413 40.449 -0.735 1 200.59 ? N3B ANP 401 C 1 HETATM 9 P PA ANP . . . E 3 -20.192 37.147 -0.201 1 206.43 ? PA ANP 401 C 1 HETATM 10 O O1A ANP . . . E 3 -20.519 37.216 1.242 1 185.13 ? O1A ANP 401 C 1 HETATM 11 O O2A ANP . . . E 3 -18.686 37.108 -0.481 1 203.48 ? O2A ANP 401 C 1 HETATM 12 O O3A ANP . . . E 3 -20.749 38.407 -0.996 1 212.31 ? O3A ANP 401 C 1 HETATM 13 O O5' ANP . . . E 3 -20.939 35.898 -0.828 1 200.98 ? O5' ANP 401 C 1 HETATM 14 C C5' ANP . . . E 3 -21.087 35.766 -2.258 1 203.81 ? C5' ANP 401 C 1 HETATM 15 C C4' ANP . . . E 3 -21.228 34.305 -2.599 1 209.73 ? C4' ANP 401 C 1 HETATM 16 O O4' ANP . . . E 3 -20.205 33.555 -1.911 1 211.29 ? O4' ANP 401 C 1 HETATM 17 C C3' ANP . . . E 3 -22.572 33.67 -2.232 1 205.67 ? C3' ANP 401 C 1 HETATM 18 O O3' ANP . . . E 3 -23.123 32.963 -3.337 1 211.58 ? O3' ANP 401 C 1 HETATM 19 C C2' ANP . . . E 3 -22.23 32.735 -1.065 1 203.15 ? C2' ANP 401 C 1 HETATM 20 O O2' ANP . . . E 3 -22.983 31.531 -1.133 1 199.84 ? O2' ANP 401 C 1 HETATM 21 C C1' ANP . . . E 3 -20.771 32.396 -1.341 1 206.69 ? C1' ANP 401 C 1 HETATM 22 N N9 ANP . . . E 3 -20.002 32.043 -0.149 1 201.33 ? N9 ANP 401 C 1 HETATM 23 C C8 ANP . . . E 3 -19.369 32.905 0.708 1 195.86 ? C8 ANP 401 C 1 HETATM 24 N N7 ANP . . . E 3 -18.746 32.312 1.698 1 196.85 ? N7 ANP 401 C 1 HETATM 25 C C5 ANP . . . E 3 -18.987 30.964 1.478 1 199.69 ? C5 ANP 401 C 1 HETATM 26 C C6 ANP . . . E 3 -18.6 29.804 2.178 1 198.14 ? C6 ANP 401 C 1 HETATM 27 N N6 ANP . . . E 3 -17.857 29.818 3.287 1 193.85 ? N6 ANP 401 C 1 HETATM 28 N N1 ANP . . . E 3 -19.01 28.611 1.691 1 200.71 ? N1 ANP 401 C 1 HETATM 29 C C2 ANP . . . E 3 -19.755 28.59 0.581 1 201.64 ? C2 ANP 401 C 1 HETATM 30 N N3 ANP . . . E 3 -20.181 29.616 -0.162 1 200.46 ? N3 ANP 401 C 1 HETATM 31 C C4 ANP . . . E 3 -19.76 30.784 0.343 1 201.33 ? C4 ANP 401 C 1 # _model_server_stats.io_time_ms 68 _model_server_stats.parse_time_ms 24 _model_server_stats.create_model_time_ms 5 _model_server_stats.query_time_ms 243 _model_server_stats.encode_time_ms 15 _model_server_stats.element_count 31 #