data_7JV0 # _model_server_result.job_id UYaL4BiWujCEyUzXbHvNjQ _model_server_result.datetime_utc '2024-11-25 13:43:47' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7jv0 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":901}' # _entry.id 7JV0 # _exptl.entry_id 7JV0 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 506.196 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'PHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 7JV0 _cell.length_a 137.66 _cell.length_b 137.66 _cell.length_c 220.89 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7JV0 _symmetry.cell_setting ? _symmetry.Int_Tables_number 178 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 61 2 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details trimeric _pdbx_struct_assembly.oligomeric_count 3 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 C N N ? 3 E N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OD2 ASP 168 A ASP 733 1_555 D MG MG . A MG 902 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.863 ? metalc ? metalc2 C O2G ANP . A ANP 901 1_555 D MG MG . A MG 902 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.129 ? # _chem_comp.formula 'C10 H17 N6 O12 P3' _chem_comp.formula_weight 506.196 _chem_comp.id ANP _chem_comp.mon_nstd_flag . _chem_comp.name 'PHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PG O1G ANP doub 54 n n PG O2G ANP sing 55 n n PG O3G ANP sing 56 n n PG N3B ANP sing 57 n n O2G HOG2 ANP sing 58 n n O3G HOG3 ANP sing 59 n n PB O1B ANP doub 60 n n PB O2B ANP sing 61 n n PB N3B ANP sing 62 n n PB O3A ANP sing 63 n n O2B HOB2 ANP sing 64 n n N3B HNB1 ANP sing 65 n n PA O1A ANP doub 66 n n PA O2A ANP sing 67 n n PA O3A ANP sing 68 n n PA O5' ANP sing 69 n n O2A HOA2 ANP sing 70 n n O5' C5' ANP sing 71 n n C5' C4' ANP sing 72 n n C5' "H5'1" ANP sing 73 n n C5' "H5'2" ANP sing 74 n n C4' O4' ANP sing 75 n n C4' C3' ANP sing 76 n n C4' H4' ANP sing 77 n n O4' C1' ANP sing 78 n n C3' O3' ANP sing 79 n n C3' C2' ANP sing 80 n n C3' H3' ANP sing 81 n n O3' HO3' ANP sing 82 n n C2' O2' ANP sing 83 n n C2' C1' ANP sing 84 n n C2' H2' ANP sing 85 n n O2' HO2' ANP sing 86 n n C1' N9 ANP sing 87 n n C1' H1' ANP sing 88 n n N9 C8 ANP sing 89 n y N9 C4 ANP sing 90 n y C8 N7 ANP doub 91 n y C8 H8 ANP sing 92 n n N7 C5 ANP sing 93 n y C5 C6 ANP sing 94 n y C5 C4 ANP doub 95 n y C6 N6 ANP sing 96 n n C6 N1 ANP doub 97 n y N6 HN61 ANP sing 98 n n N6 HN62 ANP sing 99 n n N1 C2 ANP sing 100 n y C2 N3 ANP doub 101 n y C2 H2 ANP sing 102 n n N3 C4 ANP sing 103 n y # _atom_sites.entry_id 7JV0 _atom_sites.fract_transf_matrix[1][1] 0.007264 _atom_sites.fract_transf_matrix[1][2] 0.004194 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.008388 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.004527 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 ANP A 1 901 901 ANP ANP . D 4 MG A 1 902 1001 MG MG . E 3 ANP C 1 401 401 ANP ANP . F 5 4BM C 1 402 501 4BM ZPD . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PG ANP . . . C 3 -10.343 60.436 -6.983 1 171.42 ? PG ANP 901 A 1 HETATM 2 O O1G ANP . . . C 3 -11.529 59.538 -7.154 1 154.65 ? O1G ANP 901 A 1 HETATM 3 O O2G ANP . . . C 3 -10.584 61.781 -7.774 1 161.07 ? O2G ANP 901 A 1 HETATM 4 O O3G ANP . . . C 3 -9.054 59.722 -7.557 1 163.41 ? O3G ANP 901 A 1 HETATM 5 P PB ANP . . . C 3 -8.68 61.625 -5.105 1 166.38 ? PB ANP 901 A 1 HETATM 6 O O1B ANP . . . C 3 -8.942 63.09 -5.251 1 149.77 ? O1B ANP 901 A 1 HETATM 7 O O2B ANP . . . C 3 -8.157 61.381 -3.659 1 150.02 ? O2B ANP 901 A 1 HETATM 8 N N3B ANP . . . C 3 -10.108 60.772 -5.337 1 154.9 ? N3B ANP 901 A 1 HETATM 9 P PA ANP . . . C 3 -6.997 61.999 -7.323 1 150.95 ? PA ANP 901 A 1 HETATM 10 O O1A ANP . . . C 3 -7.761 63.238 -7.608 1 144.42 ? O1A ANP 901 A 1 HETATM 11 O O2A ANP . . . C 3 -6.915 61.072 -8.54 1 133.37 ? O2A ANP 901 A 1 HETATM 12 O O3A ANP . . . C 3 -7.62 61.115 -6.14 1 161.18 ? O3A ANP 901 A 1 HETATM 13 O O5' ANP . . . C 3 -5.562 62.415 -6.821 1 130.68 ? O5' ANP 901 A 1 HETATM 14 C C5' ANP . . . C 3 -4.618 61.415 -6.403 1 131.3 ? C5' ANP 901 A 1 HETATM 15 C C4' ANP . . . C 3 -3.528 62.08 -5.601 1 128.09 ? C4' ANP 901 A 1 HETATM 16 O O4' ANP . . . C 3 -2.853 63.062 -6.419 1 122.02 ? O4' ANP 901 A 1 HETATM 17 C C3' ANP . . . C 3 -3.985 62.811 -4.339 1 136.71 ? C3' ANP 901 A 1 HETATM 18 O O3' ANP . . . C 3 -3.041 62.625 -3.291 1 141.24 ? O3' ANP 901 A 1 HETATM 19 C C2' ANP . . . C 3 -4.045 64.271 -4.793 1 130.45 ? C2' ANP 901 A 1 HETATM 20 O O2' ANP . . . C 3 -3.836 65.171 -3.711 1 138.02 ? O2' ANP 901 A 1 HETATM 21 C C1' ANP . . . C 3 -2.877 64.321 -5.776 1 123.09 ? C1' ANP 901 A 1 HETATM 22 N N9 ANP . . . C 3 -2.997 65.358 -6.795 1 124.76 ? N9 ANP 901 A 1 HETATM 23 C C8 ANP . . . C 3 -3.946 65.45 -7.78 1 126.61 ? C8 ANP 901 A 1 HETATM 24 N N7 ANP . . . C 3 -3.805 66.494 -8.562 1 119.87 ? N7 ANP 901 A 1 HETATM 25 C C5 ANP . . . C 3 -2.683 67.133 -8.056 1 115.02 ? C5 ANP 901 A 1 HETATM 26 C C6 ANP . . . C 3 -2.005 68.307 -8.441 1 105.62 ? C6 ANP 901 A 1 HETATM 27 N N6 ANP . . . C 3 -2.376 69.075 -9.468 1 94.02 ? N6 ANP 901 A 1 HETATM 28 N N1 ANP . . . C 3 -0.918 68.669 -7.722 1 107.46 ? N1 ANP 901 A 1 HETATM 29 C C2 ANP . . . C 3 -0.542 67.902 -6.694 1 110.21 ? C2 ANP 901 A 1 HETATM 30 N N3 ANP . . . C 3 -1.099 66.776 -6.24 1 113.91 ? N3 ANP 901 A 1 HETATM 31 C C4 ANP . . . C 3 -2.173 66.444 -6.968 1 119.07 ? C4 ANP 901 A 1 # _model_server_stats.io_time_ms 10 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 6 _model_server_stats.query_time_ms 269 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 31 #